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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0197800 |
| Transcript ID | LotjaGi3g1v0197800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | APO protein; TAIR: AT3G21740.1 APO RNA-binding protein (DUF794); Swiss-Prot: sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial; TrEMBL-Plants: tr|A0A151R7A7|A0A151R7A7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0197800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28967751..28974198) extracted from Lotus japonicus Gifu genome v1.2.
GGGGAAAGTAATGGAACATAATGGAATTAATACCATTGGTTTCCATCTGATTCCATCCTTTTTTTAATTACACAAACAAT GGATCTTTCAAACCTCTCTCTCCCTTCCGCTCCACTGCATCCCCTTCCCCTAATCCAAACGAAGCCTTAAGAGAGGGTCA TGGATGGGTCTCCGAGGGTTCATATAAATTCTCCAACCTCTTCCCGTTTAATTAAAAACTCTCAAACTCTCATTCCTCCC TTTTAAAATTCAACTCAGGAACTCACTCTTACGAGTAAACAAGCATTCGTAAACAAGTGCACAAAACCCACAAGAAAGAA TCGAGATCCACCGTCTGAGATTCCATTGGGGCTTGGTTTCCTCGTATCACATCTCTATTGTACGAGGTCAGTACCAATTT CAAATAGATTTTCACGATATCATTCAATGAAATGCCCCTTTGCCGATTTCAATGTTTTTTCTTTTGCTTTCATTGCAGGT TTCAATGGCATTGAGTAAGATTCCGCGGCACAATGTTGCTTTGTTCGTTGAATCAGGTGGCTGCCCTCGCCGGTGTTACG CCACCAGCAAAGTAGACCTGAGGAAGTTCCACCCCTTGATTCTGGAGAAAATCGAGAAACGTTCTCAGGCCTACCCTGTT GGCACCATGGTTCCTGTTGCCAAGGAGGTCCTCCTCTCTAGGAATGTTCTCATCCATGGCGTTTCCACCCTCATCAACTA CTTCCCTTTCATGGCTTGCAAGTCAGTGTTCTTTTTCTTCTTGTTATTTGATTTTTAATTGTGACTTACATTTTTAATTA ATTTAGTCCTTATGTTAAAATGTTTTGAATTTAAGGTGCGTTTGGGTAAACAACTTAATGTAGTGCGGATAGCAATGAAC GCATTAGCGTTTATTCATAAGTTAATTTGAGAAACTTAGTGAAATAAGCTTACTGAGCAACTTATGAAAATAAGCTCATA ATAGCTAATAGGCAGGTCATAAGCTGTTTACATAAGCTCTTTTCAGCAGTTGCATAGACGCTTATGCTATAAAGTAAGCT CAAATAAGCTCTTCCGAACGGAGCCATAATCCTGCATTGACGATCATTTTCACTTTTCTTCAGGGTCTACTTTGAAATTT TGAGAGTCAATGAGTCGTGTGTAGGGGGAAAAGCAATATAGCTCAGTTTTTATTGGTGATGGTTATTTTATAATTTGGTC TTTATACTTCAGAGTAAATCCATATCTAATGGTATTATATTGAAAATAATTGTACATGTACGGAATTAGGGATTAAACCT ATAAAGAACAATTTGAAAATGAATGTTCAGCACTGGGACCAAAAAATATATTTGAACTTTTAAATTTCAGTATTAGGGTT TGGGATTGTTTCTCTAAATTTAATGTGGGTGCGTTAGCATTTTACATTAGGCAGCTTCTTCTGCATTGTCATTACATTAA GTAGTTATCTTGCTGATACTTATAGTCCATTATGATTCTTGAACACTGGATATGTTTTGATCCTTCCATTTTTTGGCTTA AAATCTTAAATTTCCGTTTATATATTAAGCAATGGAGGAAAGGAAAGTGCAAGGTTTTCTTGGTGAATGAAACGAAGATT GGAAACATTAGCCTGTTATAACATAATGAGCAAACACTTTTGCTTGTTGCTGTTGCTTATAAATGATGAATGCTATCTAT CATAAATATCAAGTTGGTAATTTCTACTTAAAATGCTAAAGCCGATTTTCAAGTATTTTTCAGGATTATGTTCTTCAAGA ATCGTTGCCATTTAATCACAGTCGAGCATTATTTTAAGGAAAAATGTTTGAAATAGGGTGATCATTGAGCAAATTGTATT TTACTTGGACTTGTTGTCTTCCAACTTTTGTAAGCTGAAGTTATTGAGATAACTATATCTGATCTACTTAAATTGTGTAA CTACAGATTCTGTCCAGAGATATATATTGGCGAGCAGGGGCATTTAATTCAGACTTGCTGGGGTTACAGGCATCGTGCCA CGAACCGGGTTCATGAATGGGTCAAAGGTTGTTTGAATGATATAGTTGTTCCTGTTGAAACATTTCAGCTGAAAAACATG TTCCAAGGTGTTAGCCATAACCAAAGGTTTGACTCTGATCGCATCCCTGCTGTTGTTGAGTTATGCTGGCAAGCAGGGGC TGATCCCGATGATAAAAACCTTTGTCCAAGTAAATGGAACTTGGAGGCTGCCAATGGTGGTGTTGACGGAACTGAGTCTT TGTCACCAAATGATCTTGCTTCTATAGCAAATAACACTCTCAGAGCTTGGGAGACTCTTAGGTCTGGGGTGGGGAAGTTG TTATCGGTTTATTCAGTGAAAGTTTGTAAACATTGTTCTGAGGTTCATGTTGGGCCATCTGACCATAAAGCTAGGCTCTC TGGAGTGTTTAAGTGTGAGAGTTGGAAAGGAGCTCACTTTTGGATAAAAGCTAATGTGGATCATTTAGTTCCCCCAAAGA TCGTATGGAGACGAAGACCTCAAGATCCTCCTGTACTTTTGAATGAAGGGAGAGACTTCTATGGGCGTGTTCCAGCTATA TTGGATCTGTGCGCAAAAGCTGGTGCTATTGTGCCTGCAGAGTATAATAAAATGATGAAAGAGCAAGGTTTGCCTGGTCC TGCCAATAATAAAATTTGGCAAGGGCATTAGAGCATCAAGATTTTGAAAGCAACAATGAGTTGAATTCTAATCAGGCCAC TCAATCAGGGACAGTTTGGAGAACAAATCTGACTTGTCATTACTTTCATCTGCATTTTTCTGCATAATGTCAAGGTTGTC TAGCATAATGCCTATTCTTGTGTTGCTTACTTCAAGATATTTTGTTCCCATATCTCACATGTCCCCAAAATGTTTATGCA GAGAAAATCAAAATCTCAGACATCTATATATGTGGATGGACTGGAGATGGACCCGCGCTTCAGGTTGGGCAAAGGTACTC TAATGTTCTACTCTTAAAGTCAAAGATCCCAGTTATTTTTCCCTGGTTATTATTTTTGTAAACATTGAGGAATCATATCC AATAGTTCCTGGAAATATTGACAGGGGAGATATTGCATTGTTGTAAATATCTGTAACAAGTTCACCACTGCCAAAAAGGG GCAGTTTGCCAAAAAGGGAAGTGACATATCACATGAATCGAACCTCTGCTTTCTTGAAATGAAAGTTTGTTTTCTATAAA GTATCAAGTGTTTAGTTACCAAATTTGGATTATTCAAAGAACAAGGTTCACTCTAGAGGAAATAGTAAGGATCAATAAAT GTTGATTGAAAAATCAGTAAATAAGATTGTAATGAAATACATGTGAATATCTAATAGACAATGAAAGCATTAAAATCTAC TCTAACAAACAATCAAGTTATTCAAATTTACTCTGAATCTTCCAATTATTAGTTACAACTCTTCACTTTTCTCTATAAAG TAAATCTCTAAAAACCAAGTCTCTAGTTTGTTGGCTTTTATTTGCAGGTGGTGGTTCATCATAGATAAATAAATTGCAGA TGGTGTTTCATTGTGCATAAGTTCTTTCGATAAATAAAACTCTCCTTGAAGTCTGAGTGATATCTTTGAAACAAGAAAGA TAATGATTTGGTGATTGGCTTTTATCATTTGGCAAGGATAATATAATTATCCCTGTTTGCCTTATCTAATGTAATGGCCA AATTTGGTGAAAGAAAAGCGAGAATTAGGGATTTGGTTCTTCTAAAGTCTACAAGCAAGATTCTCTTACTTGCTTGGTTG TGAAAAAATACCGGGTTACCACACTGATTTTCATGCTATTATTAGTCAATGTTTATCTTACTATTTAGTTCTTTTTAATC AGTTAGCTACACTGATACATATTACGAATTTACGACTCTTAAAATTAGTTGTTAACAAGTTTAATGAATTAAATGATATA AAAGAAAGGAAAGGATACAAAATTCGAACTATTCCATCTCTCTGACTACTGAATGGTTGATACATTTAATTTTTATAATG TTGGAAGAATAATGAGATTTAAATGCAGGCCAACCATCTCTGTTGTGAACTGTAAGATACAAGAGGTGTATGATAGTACT TTTTTTTTGCTTATTGCACTTTTGGTCTCATTGTTGGATTGTGTAATTTTGGTCCCCTTGTTTTTTTTTTTCAAGTTAAT TAAGTTCTGATAGGAACCCAAATATTAGTAGTCTTAGTATTGCTAAGGTATTTGTTAGGAAGGGTAAAAGGGGGAATAAA ATTGATTCCCACTAGTGATAACTGCCAAGCTGATGTGGCAGTATCTTCAGGGTGCTAGGAGTGTGAAAGAGAGAGAATGC TGAGATGAAAATGGGTATATAAGCATGTATTGGGAGAGAGGGTGGTAGGCTTGATTTGGGATTAAGCTTGCAAGAGTAGA GGCACTCTCGAATTGCCTCAGTTTCTTTTCTGTTATTCTCTGTAATTTTCCTAAATTGGATCTGAGATTTTCTCAGTTTC CAGTACCAATCAATAGGAAACCTTTTCAATTCATTTTCCTTTCTCTGAATTTCTGGGTTCCTAACAAGTTCCTTTAGTTT TAAATTTTTGCAAGTTTTATCCTTCTATCAATTTCATGTACCTAAAGACATCATGAATCATCATTTTCTATTAAAATATT TTGGGGTTTATGATGGATTGGAAATATTAAGTAATTTTAACAGTATGAAATTTAGTAAAAATGGGATAAAATATGAAGTA TTCTATATGATTTAAAATCAGGTTTTGAAGAGGGGTAAATTTGAGATTTTTATTTGTGTGAAGTTTAATATTTTGGTTGG TGAGTGTTTGAAGGAGGCCTTAAGTGTAGCAAATTTAAATATTTAGGGACTAAATATGCTAAAATATTTATTAGGAACAA AAATCACATATCAAACTATAGTAGATATGGATATGTTTGCTTTCAAGCTGGATCGTGTTAAATGAAAACGGAGCAGAATA CTTTCTTTCACATTGAGTGTGTTCAGTTTCATGTTTGCCTCGACGTGAACCTGAAAACACATCCCAACGCATAAATGGAG AAACATGATTTTGCCAAGTTGACTTCAATATGATACTTTCTGTTCTGCTTAACTGCATTTGGACTCATCCAAGTTATACA GTTCCTTTTCAATGTATCTGTATATATACTTTCAAGGGTGCTGTAATTGGTTTCTCTGGTTTGACCTTTACTTAATCCAA CTCCAGTATATCAGGATTACATGTTAAGCTGTCTTTTATTGGTTGTTAGCTTGATCCTGTCTTTAATTTGGAACAGTGTT GTAAATTTATATTAACCTCTTTATTAGATTTGAAGGTACGAGTGTTAGTTAGTTGTTACAGTTTGAAGAAATTTTGATGC TGATACCAAGATTAAAGAATGAAGGGATTCAATTGTACAGATAAGGTTTTCTGATTAAAAGGTTGGTATAGTAGCTGGAT AACATGGTCAATTTTCACTCCTAGTCTCCCTTTAGAAAGTTTGCACTATGAAGATGTGTTTATTAAGCTTCCCTTGTAGT TTAAATAGCTTTGTAATTTTGTTTTATTTATTTTTATTTGGTGTCCTTTGCAGTTTTGCTATGAATATGATGATTGAATT TTCTTCCATGGATTTCAACGTCTATATCATTATCACTGATGAATCTCAGGATTTGCAAAATTGCTTGATCACTGGTTCAA ACCTGTCTTTTATTTTTGTTTACCAAGTTGGACTTCTGTTGTGAACACAAAACTGTCTTAAATTGCCTGATTAAATGTTA ATGTCTTGAATGGAGATTTGATTATTTGATAGTATCCCTTAGCTGATAGCAATTTATAGTATAGTAAACAAAAATTACAT CAAGAAGTGTTATTTTTCTGTTTTAATACTTTTCTTATTGTTATTCAAAGGGGCACTAAAAACTGGTCTAAGACCAGTTT GGTTCTTAAATCGGTTTAAAATGGTTCAGAGTCAGTTAATTGTATACATATATCTGTAGCAAAAATATTGTATAGTTGTA TATTCACTTAGGAAAACTATCATTATATCGACATACCTGCATACCCTACATTTGAATGTCAAAATTAAATCAACCAATCA TAGAAAAGATATCTACTCAAAGTTGGTCCCAGAGGTCAATGTCGGCAATTTTTGTGGTACACCACATCCCAACTAGCCAT GGCAGTGGCATAGGGAACACATGTTGGTATAACTTTCATGTCATGTGTGCAAAAATAGAAAAAAGGTCCAAAGTCTCGAT TTGCCTCTGCCTGCCGCTAAAAAATTCAATGTATTTTGGTAATATTACATTTATTCTATTCAAAACAAAATGTTTGATTA TACTTAGGATATTTTATTGACATATTGGAAATTAAATCTAAGCCGATGAAATATATTAATTCGCCCTTTACTTTAAAATT TAGGAGACGTACAATCTGAGATTTTGAACACACCAAATTGAATCTTCG
CDS sequence (LotjaGi3g1v0197800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTTTTCTTTTGCTTTCATTGCAGGTTTCAATGGCATTGAGTAAGATTCCGCGGCACAATGTTGCTTTGTTCGTTGA ATCAGGTGGCTGCCCTCGCCGGTGTTACGCCACCAGCAAAGTAGACCTGAGGAAGTTCCACCCCTTGATTCTGGAGAAAA TCGAGAAACGTTCTCAGGCCTACCCTGTTGGCACCATGGTTCCTGTTGCCAAGGAGGTCCTCCTCTCTAGGAATGTTCTC ATCCATGGCGTTTCCACCCTCATCAACTACTTCCCTTTCATGGCTTGCAAATTCTGTCCAGAGATATATATTGGCGAGCA GGGGCATTTAATTCAGACTTGCTGGGGTTACAGGCATCGTGCCACGAACCGGGTTCATGAATGGGTCAAAGGTTGTTTGA ATGATATAGTTGTTCCTGTTGAAACATTTCAGCTGAAAAACATGTTCCAAGGTGTTAGCCATAACCAAAGGTTTGACTCT GATCGCATCCCTGCTGTTGTTGAGTTATGCTGGCAAGCAGGGGCTGATCCCGATGATAAAAACCTTTGTCCAAGTAAATG GAACTTGGAGGCTGCCAATGGTGGTGTTGACGGAACTGAGTCTTTGTCACCAAATGATCTTGCTTCTATAGCAAATAACA CTCTCAGAGCTTGGGAGACTCTTAGGTCTGGGGTGGGGAAGTTGTTATCGGTTTATTCAGTGAAAGTTTGTAAACATTGT TCTGAGGTTCATGTTGGGCCATCTGACCATAAAGCTAGGCTCTCTGGAGTGTTTAAGTGTGAGAGTTGGAAAGGAGCTCA CTTTTGGATAAAAGCTAATGTGGATCATTTAGTTCCCCCAAAGATCGTATGGAGACGAAGACCTCAAGATCCTCCTGTAC TTTTGAATGAAGGGAGAGACTTCTATGGGCGTGTTCCAGCTATATTGGATCTGTGCGCAAAAGCTGGTGCTATTGTGCCT GCAGAGTATAATAAAATGATGAAAGAGCAAGGTTTGCCTGGTCCTGCCAATAATAAAATTTGGCAAGGGCATTAG
Protein sequence (LotjaGi3g1v0197800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFFLLLSLQVSMALSKIPRHNVALFVESGGCPRRCYATSKVDLRKFHPLILEKIEKRSQAYPVGTMVPVAKEVLLSRNVL IHGVSTLINYFPFMACKFCPEIYIGEQGHLIQTCWGYRHRATNRVHEWVKGCLNDIVVPVETFQLKNMFQGVSHNQRFDS DRIPAVVELCWQAGADPDDKNLCPSKWNLEAANGGVDGTESLSPNDLASIANNTLRAWETLRSGVGKLLSVYSVKVCKHC SEVHVGPSDHKARLSGVFKCESWKGAHFWIKANVDHLVPPKIVWRRRPQDPPVLLNEGRDFYGRVPAILDLCAKAGAIVP AEYNKMMKEQGLPGPANNKIWQGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| SignalP_EUK | 1 | 15 | 15 | - | – | |
| Phobius | 2 | 10 | 9 | - | – | |
| Phobius | 11 | 15 | 5 | - | – | |
| Phobius | 16 | 344 | 329 | - | – | |
| PANTHER | 29 | 335 | 307 | 1.2E-149 | – | |
| PANTHER | 29 | 335 | 307 | 1.2E-149 | – | |
| Pfam | 40 | 176 | 137 | 1.1E-35 | ||
| ProSiteProfiles | 95 | 179 | 85 | 15.455 | ||
| Pfam | 205 | 320 | 116 | 8.3E-17 | ||
| ProSiteProfiles | 236 | 321 | 86 | 17.756 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi3g1v0197800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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