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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0198400 |
| Transcript ID | LotjaGi3g1v0198400.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29000556..29004965) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCAATAAGATTTCGTGTTTCCCAATCCCATAAAAATGAATTAAAATTTCCACAAATTGTTATTTCCTTACCTGTTT TATTTTTATCTTAAAATAAAAAGCCAAACACCCTCGTCGTAAATAAAAGAGGAAAAAAGGGGCTTCGTGTTCCCAAAGTT TGTGTTGAAATCCAAATCCCTCTTTCAAACCTTCCACTCCTCACTCGATCGATCGGTGCCGTTCATCTCTCTCTCTCGAC GCCTCCGATTTCCGGTGAGTTTTTCTTCTCCGTCACGATTTCTCTCTATCTGTTCTGGATCTCTTTGCTTGTTGTGTCTA CTGCATTATCTATTACCGTTCAACGATTCTTGCATCTTCTCTGGAGTTATATTGGTCTTGCTTTTTGTGCTTCGTAGAAT ATTTGTGCGCTTCTGATTGTAAAATCAATTGAAGGTTGCAGTTTTTCAATTTTTTTTCTTCTGGGTAGGGTTTGTTCAGC TTTGTAGATTTCCTGGTTTTGTATATGTGAAAAAAAGGCAAAAATTGTTTAATCTAGGTCATAATTTTGAACTTCTAGCT AGAATGTTGAAACTGCTGTGTCCTGGTTCACTGCGGCTCAAAGGGTAGGTTTAGAAATTAGAAGCCATCAATGTGAAGTG TTTTCCAGGAGCAAGTCTTGAAATTAGGATAGTGGTTGAGTTTCAGTAGCTATACAGTATTAGCTACTCTATGAAACTAG TTTTTACCCGTGTTATGGTTATTGGTACTACGGGTTCTGTGTTTGAGATAAATGAACGAGTGGCTCGGAGATCTGGTCTG ATTGAAGTTTCTTTATTTGATTAGATATTTAACTGAGATTAACAAGTTTCTAGGGTTGTCTGTTTTTTACTTAGGGGAAA CTCGCACACCCTAATATTGGACTTGAAAGCTAATGCCCTTACAAACATGTCTCTCTCCATTCTGGGCTTGATGCTTGTCC GAACAGTCATTTAGAGCGTTGACCTGTTTTGTAACTGGCGTGTCCCCTTTAGCATCTCTTATTTCGGGGGAGTATTAAGA AGGGCAGATGTTGATCTTTCATCCTTGTAACCCTGAGTGTATAGCAAGTTCACAATGCAAAGTTGATGAGTAACAGATTC TGAATTGTAGCGTTTAACACAAGCATCTTGGAATAAGGCTTAATTATATGTTAACATTTCCATAGGATGAGTTGTACTAT TCCTGTTATCACTGCTCAGGCAATATCCATAACCTACCTTTAACCTTCCAGAAAATAGTGAGAGCTGTATTATGTATGTA AGGACTCTGGAATCTGGATCAGATGACTTAGTTTAAATGCATTTAGTGTGATCCTGTTCTCAACCGCCAGTGGAACCACG AACCATTTGTATTATAAAAAAACTTTGTAAGCCCAATTTATGGAGTAAAGCATTTGCATTTCATTTGTCTTCTTCACTTT CTTAATTACTCAGCTTAGAAACATGTTCCTTTGGGTAGTTGACTCCCATATTAAAGTTGAGAAATTTACAAGTTCCTGAT CAGGAGTATTAGGATGCCTTAAGAGAATACTGCTAAGATTATCATCTGAAATCATACCGACAGGCATACCAGTATTATCC AAAGTTTTCTGAACATTGAAAGACAAGGCAGGGAGGACATTAACAGGTAAATAGGAGAGTATGTCAGAATAGCCCCCCAT GATAGATAAACTTCCTATCTGATTTACTGCATTATCCAAAGGGGAATCCTCTACCTGCACAAGAGCTATAGGAGTAGAAC ATGAAAATCCAGCATGGCCAGCTTCCTTGCCAGCCAGCTTCAACAAATAACTATACAATTCCCTCTGAAATTGTTTCACT TGTCAGCTGCATTTTTCATTTCCCTTTGTCCTTTTACCAACTCTATGTCCTACCAACCGCTTCATGTTGTCTTTTATAGG CCCTAGAAACCATATATTTTAGAAAAGATTGTGATAGAAACTGGAATCTTTATTACTGAAAAATGGGGAAATTCCCCTTG ATTACAGACAATAGCAGAACTTCAAGGATCTGCCAAGCCTCCCAATGCCCAAAGGCTCTGAACTTTCTCAAGTGACTATC CCTAGACACCTTTTCCCCCTTGCCCCTCTTCCTATTTATAGGCAAGGCAACATATGCCTTACTCACTAATCCACTTACCA ACTAACTAATATTCTCTTACCTAACTAATTCTACTAAGTGTACCTATCAGATCAAGATATGCAAATGTGTGTTTTTAACT TAGAGTTATCTAATTTATGAACTTTCAAAATTTAATGCGTTGTTTTCGAGTTACATAAAGATTAATTTTCTGGAGAAATG GAAAAATATAGCCACAATGTTCTTCAATGTCCCATCTTTAGTGCTAAGGTAAACCTATATTGTCAATTGAATGATATTTT TTCCAAATATTTCTTTTGAAGAACTAATGTATGTTAGTGGTCTTTTTTATGATGGTGGTCATTTGTTGTTTTACTTTCTT TACAATTTATATTTCTCTTGAATTTGCAGGTATATATAGGACAAAGTAAGTGTTAGAATGCTAATTCTTTCTTTTCATTT TGTTCCAAACTAGGAAAGTATATAAAAGACAGAAAAAAGTGTTAGAATTTTAATACTTTTCCTATAATTTTTTTTCAAAC TGGAAAATAGATTATTGATTCCTCTGATTTTCTGTGGTTGCTACTTTGCTTTGAATTAGTTGTCAAGTGATCAAAATGTC TCGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAGGGTCGTCTTTACCAAGTGGAGTATGCAATGGAGGCCATTG GGAATGCTGGTACTGCAATAGGGATCTTATCAAAAGATGGGGTTGTGCTGGTTGGTGAAAAGAAGGTCACATCCAAGCTG CTGCAGACCTCAACTTCCACCGAGAAAATGTACAAGATCGATGATCATGTTGCATGTGCTGTGGCTGGGATAATGTCTGA TGCCAACATCCTAATCAACACAGCCAGGGTACAAGCGCAACGCTACACATTTGCCTATCAAGAGCCCATGCCAGTTGAGC AGCTAGTTCAATCTCTCTGCGACACCAAGCAAGGCTACACCCAATTTGGCGGTCTTCGACCATTTGGAGTCTCCTTCCTG TTTGCAGGGTGGGACAAGAATTTTGGCTTTCAGCTTTACATGAGTGACCCCAGTGGAAATTATGGTGGTTGGAAAGCTGG AGCTATTGGTGCAAATAACCAGGCTGCACAGTCAATACTGAAACAGGACTATAAGGATGATATCACTAGAGAAGAAGCAG TGCAACTTGCATTGAAGGTTTTAAGTAAAACCATGGACAGCACAAGTCTGACATCAGATAAGCTTGAACTTGCTGAGGTT TATCTGTCTCCTTCTGGAAAAGTCAAGTATGAAGTTTGCTCCCCAGAGTCCCTCACTAAGCTGCTAGTGAAGTCTGGTGT GACCCAACCAGCAACAGAATCTGCCTAGTTTGCTGTTCTATCCCCTGATGCAGTTTAATTATGTCTATCCTTTTCATTTC TGGTGTTTTTGGATTAGATTGCAGATATTGGCTCAAACATATTCAAGCTTAGACATTGTGTATGTTGGTAATGCTGATGG CAGATATTTCGTATTTCTTAGATTTTCATGACAGTTCGATGGTATTTGCGTTCCATTTGGTTTACCACCGCAGTTTCACT TTTTGCTTTCTGTTATTTGAATTAAGGTTATTGAATCAGCATATCATCTTGTGCCATTTTCTATGTTTAAGGGCCAATTC ATTTAAGCCATTTTTTATTGGTTAATGACTTTTAACAAAGTTCTTGAAAGAGCTTATTTTAAAACTATTTCAATTATTGT AGAATGCAACTTCATTACAGTTTTGAACACATTTTTTCAAGACAAATGAGGAGAGGTTATCAACTTTACACTTCAACTCT CCTCACCATACTAGTAAGAGGAAATAAGATAACAAAGCCAAAGAAAAAGAAAAATAGAAGATAAACAAATTACCAACTTG GCATGTAAAATACTACATTTCAAACTTGATAAATGTCTGTTATCTATGGAAAATATAGGCATAGAGGAGCTCATTCCACG TATCTGGCACTCCAGGGAGGCACCAATGTATGCAATCTGCATAACTTTCTGGATTTGATATCTGTTCTTCTGTTAAAGGT TCCCATTGCTTCCTATAGATAGATGGATGACCTTCTTTCCTGTACTCTGAGAGCTGTGTGATGTTAAGTATTTGAACTTC TAAACCTCTCCCCTTTAAATCTTCAACCACATTTTCCACAACTCGCATCATTTTAGGAACAGAACCATTCCCCCAGTATC CCTCTTCTGTAATTATATCTGTTTCCTTGTAACAATTCTCACCCTTAGCTCCTCCCCATTCATGAGCCCTGCACATTTTT TTTCTTTCTC
CDS sequence (LotjaGi3g1v0198400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAGGGTCGTCTTTACCAAGTGGAGTATGCAATGGAGGC CATTGGGAATGCTGGTACTGCAATAGGGATCTTATCAAAAGATGGGGTTGTGCTGGTTGGTGAAAAGAAGGTCACATCCA AGCTGCTGCAGACCTCAACTTCCACCGAGAAAATGTACAAGATCGATGATCATGTTGCATGTGCTGTGGCTGGGATAATG TCTGATGCCAACATCCTAATCAACACAGCCAGGGTACAAGCGCAACGCTACACATTTGCCTATCAAGAGCCCATGCCAGT TGAGCAGCTAGTTCAATCTCTCTGCGACACCAAGCAAGGCTACACCCAATTTGGCGGTCTTCGACCATTTGGAGTCTCCT TCCTGTTTGCAGGGTGGGACAAGAATTTTGGCTTTCAGCTTTACATGAGTGACCCCAGTGGAAATTATGGTGGTTGGAAA GCTGGAGCTATTGGTGCAAATAACCAGGCTGCACAGTCAATACTGAAACAGGACTATAAGGATGATATCACTAGAGAAGA AGCAGTGCAACTTGCATTGAAGGTTTTAAGTAAAACCATGGACAGCACAAGTCTGACATCAGATAAGCTTGAACTTGCTG AGGTTTATCTGTCTCCTTCTGGAAAAGTCAAGTATGAAGTTTGCTCCCCAGAGTCCCTCACTAAGCTGCTAGTGAAGTCT GGTGTGACCCAACCAGCAACAGAATCTGCCTAG
Protein sequence (LotjaGi3g1v0198400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM SDANILINTARVQAQRYTFAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNFGFQLYMSDPSGNYGGWK AGAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDSTSLTSDKLELAEVYLSPSGKVKYEVCSPESLTKLLVKS GVTQPATESA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 241 | 241 | 2.8E-94 | ||
| PANTHER | 2 | 247 | 246 | 3.4E-137 | – | |
| PANTHER | 2 | 247 | 246 | 3.4E-137 | – | |
| CDD | 3 | 215 | 213 | 2.24214E-162 | – | |
| SUPERFAMILY | 4 | 226 | 223 | 5.29E-80 | ||
| Pfam | 5 | 27 | 23 | 1.3E-13 | ||
| ProSitePatterns | 5 | 27 | 23 | - | ||
| SMART | 5 | 27 | 23 | 3.4E-11 | ||
| ProSiteProfiles | 20 | 237 | 218 | 92.186 | ||
| Pfam | 30 | 214 | 185 | 3.5E-62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Cellular component | Proteasome core complex, alpha-subunit complex | The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi3g1v0198400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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