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LotjaGi3g1v0198400.4

Overview

Field Value
Gene ID LotjaGi3g1v0198400
Transcript ID LotjaGi3g1v0198400.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Proteasome subunit alpha type; TAIR: AT4G15165.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|F4JJE5|PSA4B_ARATH Putative proteasome subunit alpha type-4-B; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:29001498..29002250) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAGGGTCGTCTTTACCAAGTGGAGTATGCAATGGAGGC CATTGGGAATGCTGGTACTGCAATAGGGATCTTATCAAAAGATGGGGTTGTGCTGGTTGGTGAAAAGAAGGTCACATCCA AGCTGCTGCAGACCTCAACTTCCACCGAGAAAATGTACAAGATCGATGATCATGTTGCATGTGCTGTGGCTGGGATAATG TCTGATGCCAACATCCTAATCAACACAGCCAGGGTACAAGCGCAACGCTACACATTTGCCTATCAAGAGCCCATGCCAGT TGAGCAGCTAGTTCAATCTCTCTGCGACACCAAGCAAGGCTACACCCAATTTGGCGGTCTTCGACCATTTGGAGTCTCCT TCCTGTTTGCAGGGTGGGACAAGAATTTTGGCTTTCAGCTTTACATGAGTGACCCCAGTGGAAATTATGGTGGTTGGAAA GCTGGAGCTATTGGTGCAAATAACCAGGCTGCACAGTCAATACTGAAACAGGACTATAAGGATGATATCACTAGAGAAGA AGCAGTGCAACTTGCATTGAAGGTTTTAAGTAAAACCATGGACAGCACAAGTCTGACATCAGATAAGCTTGAACTTGCTG AGGTTTATCTGTCTCCTTCTGGAAAAGTCAAGTATGAAGTTTGCTCCCCAGAGTCCCTCACTAAGCTGCTAGTGAAGTCT GGTGTGACCCAACCAGCAACAGAATCTGCCTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0198400.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTCGAAGATATGATAGCCGTACAACAATCTTCTCCCCCGAGGGTCGTCTTTACCAAGTGGAGTATGCAATGGAGGC CATTGGGAATGCTGGTACTGCAATAGGGATCTTATCAAAAGATGGGGTTGTGCTGGTTGGTGAAAAGAAGGTCACATCCA AGCTGCTGCAGACCTCAACTTCCACCGAGAAAATGTACAAGATCGATGATCATGTTGCATGTGCTGTGGCTGGGATAATG TCTGATGCCAACATCCTAATCAACACAGCCAGGGTACAAGCGCAACGGTGGGACAAGAATTTTGGCTTTCAGCTTTACAT GAGTGACCCCAGTGGAAATTATGGTGGTTGGAAAGCTGGAGCTATTGGTGCAAATAACCAGGCTGCACAGTCAATACTGA AACAGGACTATAAGGATGATATCACTAGAGAAGAAGCAGTGCAACTTGCATTGAAGGTTTTAAGTAAAACCATGGACAGC ACAAGTCTGACATCAGATAAGCTTGAACTTGCTGAGGTTTATCTGTCTCCTTCTGGAAAAGTCAAGTATGAAGTTTGCTC CCCAGAGTCCCTCACTAAGCTGCTAGTGAAGTCTGGTGTGACCCAACCAGCAACAGAATCTGCCTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0198400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGTAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIM SDANILINTARVQAQRWDKNFGFQLYMSDPSGNYGGWKAGAIGANNQAAQSILKQDYKDDITREEAVQLALKVLSKTMDS TSLTSDKLELAEVYLSPSGKVKYEVCSPESLTKLLVKSGVTQPATESA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF56235
1 177 177 5.9E-57
IPR029055
Gene3D
G3DSA:3.60.20.10
1 98 98 3.9E-40
IPR029055
PANTHER
PTHR11599
2 97 96 1.9E-101 –
PANTHER
PTHR11599:SF13
2 97 96 1.9E-101 –
SMART
SM00948
5 27 23 3.4E-11
IPR000426
ProSitePatterns
PS00388
5 27 23 -
IPR000426
Pfam
PF10584
5 27 23 9.8E-14
IPR000426
ProSiteProfiles
PS51475
20 195 176 70.521
IPR023332
Pfam
PF00227
30 101 72 6.9E-19
IPR001353
PANTHER
PTHR11599
97 205 109 1.9E-101 –
PANTHER
PTHR11599:SF13
97 205 109 1.9E-101 –
Gene3D
G3DSA:3.60.20.10
99 197 99 1.1E-24
IPR029055

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004175
Molecular function Endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
Subterm of
GO:0004298
Molecular function Threonine-type endopeptidase activity Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
Subterm of
GO:0005839
Cellular component Proteasome core complex A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex.
Subterm of
Part of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0019773
Cellular component Proteasome core complex, alpha-subunit complex The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.
Subterm of
Part of
GO:0051603
Biological process Proteolysis involved in cellular protein catabolic process The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0198400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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