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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0198500 |
| Transcript ID | LotjaGi3g1v0198500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G01620.1 TRICHOME BIREFRINGENCE-LIKE 35; Swiss-Prot: sp|Q8RXQ1|TBL35_ARATH Protein trichome birefringence-like 35; TrEMBL-Plants: tr|K7KCY1|K7KCY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0198500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29015821..29023514) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGTTAAAACGGTCAAACGGTGCTGCTATATAACTTTGCCATGCCATAAATTTAGCATTCTTATATTACCAATAACC ATTTTGTACAGCTAATATTGGCAAGATACAGAAAAGCTTCACCAATTAGCATCAGTCAAAACTATCAGAACCTGCACTAA ATTCTGATTCTGTCATTCTGAGTACTCTTTATGACACCATGTTAGTATCAATTTGAAGCTGAAACTTTGTATTATTTCCT CTTTCTTATTCAATGATATAACATGCTTTTTCAAATCTCTGACTCAGTCACTGAAGCAAAAAATGCAGAGATGGAAATGG AGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTTCATAGCATTCTCAACCTTCCACAGTGA ACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAGAAGCTTCCTATGTCAAACCCAACCTCT CTGGTCAACTCAAGCAAGCTCCAGGTGGGTGCACACAACTTGTTTGCTATTATGCTTCACTGAAAACTTCAAACAGAAAT GATAAATTTTGGTCAATTTTTATGCTTTGTGAGTTTGATTTGTGCTTTCTCTTTGACTTGTTGAAATGGGTTTTTCTTTT TTTGGATTTTAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTGGAGTATAGTGGCCGGAAAATTGCTTGGTCT GGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGATGTTTTCTCGGGCAAGTGGGTCTTTGATAA TGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATCAATTGGCCTGTCACAAGCATGGAAGGTCTG ATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAGAGGTGATTTCTCTTTGAGCTTTTTTTTCTC CCCTTTGAGCATAGTAAGATCATGGTTTTGTTGGTGCATGAGTGGGAACTAGCCAATTCAAAGTTCCAAGGTCATCATTG TTTTGTGAAGTTATGTATAACCAAGATAGGTTCCGTAGAGTTTCTATTTTTGGTTCAAAGAAAAACACATTAATGCAAAT GGGTAAGACAAATCCATGTGAACAATACTACAATGCTACAACATGAAACACTACAAATATAACATGCTTGCTCACAAAAA CATAAACCAATATAACAGGTAGGCAATAGATCAAAACATCCTCCTTAAACAGATTTGATTTCAAAATCAAGCCTCTAGCT AATTTTTCCTTTGATGCCTCTAATTCCGAGGCCCTCTGCTGGAGCTGGTGCAAAGGAGACCAACCAAGAACAAGCGGCTC AGCCGCTCCAATCTAGCTTTTCAGAGGTAGTCTGAAGTCAATCAGAAGTGGTGAGGGAAAGAGAGGTGGGAAAATGTTAA AGGTGATGGTGGAGAGAGGGAACATAGAAGGTGGTGGTGGTGGTGGTAGCGGCGGCTGGATGAAGGAAGAGAAGGATATG GAAACTAAAACAGAAAGAAAAAATACAGCTAGAAAGTAGAAACTAAAACCCCTCCCTTAGGATGGAGGGAAATCCAACTA TGCGGCGGCTGTAGCTTGAAGAAGAGGGTTTTCAGTTTCTGTTTCAGAGAGGTGAGAATTTTAACTAGTTCTGTAGAGTT CCGTTCCAAGTGGGAGTGTGGGACATTTGTTCTATTGTTTCTGTGGAATTGGAGTTAGAAAAATCACAACAATTTGTTCT GCTTAAAAGCATCATATGAAAATGGTAATGATTTTTATAACCAAGTAGGTTCGTTATGCTGGTCTTCACTGATTTCTTGT CTATAACAGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGCTAATGTTTGTTGGGGATTCACTAAACA GAGGGCAATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGATAAGAGATCAATGTCACCAAATGCCCAT CTTACCATCTTCAGAGCAGAGGTAAGAACCCTATGCTTTAATGTAGCCCCCTATACAATGTTGTCTTCTTCCTTCATTTC ACTATTTCTTATTAGACCACTTGATGTTCTAAGACATTGGATTGATGGGGTTTGGTTCACCAGTACCACTGTCTGAGATT CTCCTCATCTGCACGCTGCTAACTTTTGTGCTAATTATCAGGAGTATAATGCAAGTGTGGAATTCCTCTGGGCTCCTCTT CTTGTTGAATCTAATTCCGATGATCCTGTAAATCACAGACTAGGTGAACGGATAATTCGTCCTGATTCTGTTCTTAAGCA TGCATCACTGTGGGAGCATGCTGATATACTTGTTTTCAACACATACTTGTGGTGGAGACAAGGCCCAGTCAAGCTATTGT CTGTATCAGTTTATCACTACACAATTGGATTTTTAACGGGAATTTGTCTACTCGATTCTGATTGGATATTCCAATTTGTA ATTTTTCAGATGGACTAGTGAAGAAAATGGAGCTTGTGAAGAATTAAATGGACAAGGAGCCATGGAGTTGGCCATGGAAG CCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTCAAGAAGCGTGTCTTTTTTGTGACCATGTCCCCAACACATCTC TGGTGAGCACCCAATCTAGATTTTTTATGATCCCATCAGAAAATTTTTTTGCCAGTATGCATTATTGAACATGAACCTTT GGCCAGAGGTTATTCTAATTCTTTATTCAAACTCACATTAGTTAAAAGGGGACAACATTACTGTTGGCTGGTTTTAAATG ATTAGTTCATTATTTCTTCTGCATTCTTAGAACATGTGGCAGAATTATGTTAGTGATTTTCATTCATCTTATATGCTAGT TTTAATTTGGATAATCCAAACCAAAGTTTTAACTTCCTGCCTTCACCCCTCTTCCATGGCAGTCTGCAATTCTGCCAAAA TTGTCACTGTAAAAATCTTACTATTTCTGGTTTGAATATTGACTTTCTTTTGATATCATATATATTGGTCATGTAGTATA CATTCTATTGTGTTAAAATATAAAATATGTTTTAGCTGCCAAGTTTTAGCCACATAAAGAAAATGTCAGTGTAATCAATG TCATATGTGTTTGTGCATAGTGCATACCCCTTGGAAACCAACCGAACTTCAATAGAGCCAATAGGACCATTAGAATTTAC TTTAGTAGTGTAAATATACTTACACCTACACCCATGACCCAACATATTTCTTCCCCACGGGCAAAGGGACCAAATCCCAA GTCTCATTATGTTCATCGGACAACATTTCCTCCATATCTCGCTGCCAATCAGCATGTATTAAGGCATCTGAAAGAGACTT AGGGACAAAGGACTTAAAGGTAGATGATAAATTAGTTGAAGATACATAGTAAGAGATAGAGTAGGTGCAAGTGGGTTTAC CTTTACATAAGACTATGGGAAGGTCCAGAACACTAGAAGGATCTGTAGACACCGGAGGAGGTTGAAACAAAGGTTGAGTA TCCAGTGGAGAATCACCAGTTTTCTGCTACCGACTGTATGTCTTCTAGCATAATTCGAAACATGTACCAGTGGTCCAGTA GGAGTCTATGGAGCAGGGTAAGTCATGGTATAAGTTACGGAGGAATTATATGACTCCCACACAGGTAAAGAGAATGACAA CCCATCAATGGAGTGGTCCTCAAAGAACTTAACATCAATAGAGACAATATAGCGACCAAGATCTTGAGCGAAACATCGAC ACCCTTTCAGGGTACAAGAGTAGCCCAAGAGCACACACTTCAAGGACATTAGGTCCAACTTAGTCACTTGAAACCTGACA TCAAGAACAAACGATGTGCATCCACATACTCTTGGGGAAGGGGAACAAAGATCAAGAAGGGAAAAGGATAGAATAAGGAA CAACTCCATTTAATATAGATGACGACATGCGATTAATTAAATATGCAGCAGTAAGAGCTGCATCTCCCCACGAAATTTTA GGAACTTTCATATATAACACTAGCCTGGGCAACTTTCACAAGATTTCAACTTTTATGCTTAGCCACCCCATTCAGTTCTG GTGTAACAATGCGGGATGGTTTATAAATCATATCATGTTCATTCATAAAAGCAAGAAATGGTACAAACAAATATTCTTTG GCATTATCACACCTGACATTCATATTGCGTACGAACTTCAACACAAAAATTACAAAATATAATGAACTACTCAAATATGG ATTTCAATAAATATAACCATGTTGTATGAGAATAGCCATCCATAAATGTAACAAATGACTTATAATCTAACATAGAAGTC ACAGGGCAATGACCCCCACACATCAAAATGGACAATGTCAAATAGGGATGTAGCACTTATAATCAAATGAAGTAAATAAA CACTACAGTGATGTTTAGTGAACTGGCATGACTCACTAGTCAGGCTTGATATGGACTCTAATTGAGAATATAGCTTCCTA AGAACACCTAAAGACAGACAGCCAAGGCGACAGTGAAGCTGGAAAGGGGATAAGCTACTGGTAGGAGAAGTTGTTGATGC CTTCAGGGCTCCTTCCACTTGGTACAATCCATCATATACACTTCCTCTACCAGTAGTCCTTTGTGGCAACAGATCCTGAA ATTCACAAGAATCTGAAAATAAAGTTAAATAGTAGTTCAAAGTAAGTTTATATCACGACTAAGTGAGGGAAGATTACAAG TAAACTCAGGTAAATACAAACACTAGACCATCAAAAAGAGTTGTAGACAGGTGTATACTAGAGGAACTGAAGGAAGAAAA GATACTTGAATCCCTAGTTATATGATCAGTAGCGCCAGAATTAGTGGCCCAACCCATGACGTAGAGGATAGACACGCAAT AGGATTACCTGTTTGGACAAATGTTTGGTGGAGGATGAAGGTGAACTAATCACTCATACCCACCTTACGTCTGTCGTGAC TGGGAAGCAGGGTTAGCAAAGTGAGGATTTCTTGACCACTGTGAATACCCCACATTTGATCGCTCTGCTTTAGTAGTCCA TTCTGGTACAATCACCACGATTTCCTCCGCCTCCACTGTGATTGCCTTGAGTTCTGGAATGGACTACTAAAGCAGAGTGA TCAGATGAATCAACATCAGTAGTAGATCTAGGTTCCTTAAAAGAAGAATGCATGACCTGAGAGAGAACATTAGTGAGATT ATCTACCTTTTATGCTCGACTAGATCTGAGACCTCACCACCTCATACTCTAGGCAAGGCTAGATAGCAAACTCAAGGCTA TTATGAGTTTCTTTTGTTGGGTTATCATCTCCTCTACAAACTTTCAGGCCAATAGAGAAGTTAGCTCCTCAATATATTTC TTAAACTCTAAGAAATAGGCCATCACCTTACACTTGTTATGCTTTGGGAAAAACATCTCTTGCTATAGGAGCTTATGAAA AAAAAAAGAACTCTTGCAATAGGTCATAGACACGATTCAAATTATCCTACCTTCCATAAATAAATTGCAGAAAATCCCAC AAATCCTTCATTGTTCTGTAGTGGGTAGTAAGTAATGACCGCATCCCGCTTATCAACAAAACTCACCAATAAGGCCAAAA TACACTTATCCTCTGTGCTGCATTTCGCGGCTACCTTTGGGTCCACTAGACATCTCTATGTCAAATGTCCATCCTTTCCC ATTCCTCGTAAGCTGGCCTCCACAAAATATCTCCACTCCACATAATTCTCACCATCCCTATCAAGCTTTATATAAGTGTA TATGGACAAAGTTGTCATAAATTCCGTTCAGTGACCGGGGCCTTAGAGCTCTCGTCAAGTGCTAAATGCAGTCTCCCTGA TATATATAATACTAAGTTAGGAGTGAAGTACATTTTGCAGTACAAAGTACGGGGTACAAGTACATTTGATCATAACCCTA ACTCTTAACATCAATGCAAATGAGAATACAATAATAACCAGATAAATGATAATATTTTATCATGTGATTTACGTCTATAA TGATTCATCCTAACTCTTAAAACACTAAATCTATGTTTTGATTTAAGATTTGTATTTTTCATATCAATCTTTTCACTTAT TTTATATGTTGCAATATAGTCTGCTGCATCATCTTCTGTGTTGTTTTTGTGTCCCATGTCATGTTTGTGCTTCCTGGTTT TTAGATGCCACTTATTGGCCTAGTGGTCACCAGGTGTGTACTAGGTTCCCCTTCTCCCCTCTGGTATGATACAGGCTCAA CATTCCCCTTTCCCCAAATTAGGCCTCAATTTGGTTCCTCCCAGATGCTTTAAAAATAAAAGTTTTACTTTTTTATTCAA GTTGTTTATTTAATAAAATTGGATATCAAGCAGCAATACCGGTAGTACCATTCTGCATGCTAATTGCCAAATGCAAGAGA GGTATTAGGTATGATGCAGGTGACATGAAAACTTGTCTACGAATGCCGAATGTTACAGTAACAGAGTTCAGGAAAAAGAT GCATTCTCTTTGTTATTGATATTTTCACACTTACTAGTATCTTAACATCAACATAGGGAATCCATATATCCCATGCTCTA TATTTTCTTACTGAAATGAATATTATTCTGATTCAGGAGCCGAGAGTGGAAGCCAGAAAGTGAGGGAAACTGTTATGATG AAAAGGACCCCATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCTACAATGAGAAGCGTGGAGAAGATCCTA AGCAGTTTAAAATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTATAGGAAGGATGGTCATCCTTCCATTTT TCGCAAATTTTGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTTACTCTGATTGCATACATTGGTGCTTGC CAGGGGTACCTGATGTGTGGAATGAGCTACTATTCCACTTATTATAGAAGCCATTACACGATATTCAATTTTCTGAATTC GATAATCATGACAGTGTCAACCTCCGCATTTGGGAGAGTAGCAAAAGGTGCTTCTCTGAGTTGTTTAACACGAGAGTTAA GGGAATTTGCTGAAAATTGTGGGATCTTTGTGCTCATCTGTTACGATGAAACCTAGCTTCATTTAGAAAATGGAAGGAAA AGAAACAAAGATAGTTATTTGTTTGATTACTTTTGAATGTAATTTGTTCCATTCTCTCCTCTTGCACATTTGTTGATGTA AACAAAATCAGGATTATGAGCACATAGCTATGCTATTTATTACGAAAAAACTGCAGACGAAATGCAAGAAAAACTTAGGT GGATCCTTTTAAACCCATCATTTATGGATAATTATGAAACGGAGAAAATTATTTTTAAAAGAAGCAGGAGAAGTGTACTT ATCATCCATCTAAGTCATTCTTGCATTTCGTATGTAGTCTCTATGTAACAAATACCATAGCTATGTGCTCGTAATCCTGA TTTGCTAAAAAAAATAGTAATGCAGAGGGCAGTTCTTAAACGGATCATGACATCTGGGTTGAAAAACATTACAACTGCTC CATTTAGAAACCATAAAGCAAACATCATAGAAAAAGGTTTTATAAATTTATAAGAAATTTTAAAAAGCTTTCTATCCTTT TTCCTTTGCTCTCAACAAGTTATTTTAGGTAACAATGTATAGCAATTAGCAGCATTAATAATACTATAACTGGCCTGACA TTTCCATTCGTTAG
CDS sequence (LotjaGi3g1v0198500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATGGAAATGGAGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTTCATAGCATT CTCAACCTTCCACAGTGAACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAGAAGCTTCCT ATGTCAAACCCAACCTCTCTGGTCAACTCAAGCAAGCTCCAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTG GAGTATAGTGGCCGGAAAATTGCTTGGTCTGGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGA TGTTTTCTCGGGCAAGTGGGTCTTTGATAATGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATC AATTGGCCTGTCACAAGCATGGAAGGTCTGATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAG AGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGCTAATGTTTGTTGGGGATTCACTAAACAGAGGGCA ATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGATAAGAGATCAATGTCACCAAATGCCCATCTTACCA TCTTCAGAGCAGAGGAGTATAATGCAAGTGTGGAATTCCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCCGATGATCCT GTAAATCACAGACTAGGTGAACGGATAATTCGTCCTGATTCTGTTCTTAAGCATGCATCACTGTGGGAGCATGCTGATAT ACTTGTTTTCAACACATACTTGTGGTGGAGACAAGGCCCAGTCAAGCTATTATGGACTAGTGAAGAAAATGGAGCTTGTG AAGAATTAAATGGACAAGGAGCCATGGAGTTGGCCATGGAAGCCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTC AAGAAGCGTGTCTTTTTTGTGACCATGTCCCCAACACATCTCTGGAGCCGAGAGTGGAAGCCAGAAAGTGAGGGAAACTG TTATGATGAAAAGGACCCCATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCTACAATGAGAAGCGTGGAGA AGATCCTAAGCAGTTTAAAATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTATAGGAAGGATGGTCATCCT TCCATTTTTCGCAAATTTTGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTTACTCTGATTGCATACATTG GTGCTTGCCAGGGGTACCTGATGTGTGGAATGAGCTACTATTCCACTTATTATAG
Protein sequence (LotjaGi3g1v0198500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRWKWSRKKPPIFPLLVVFFMVFIAFSTFHSEHSIQQIHENPDHVHNHQEASYVKPNLSGQLKQAPEVLDRFSRCNSTV EYSGRKIAWSGDSQRSGHRRASSESCDVFSGKWVFDNASYPLYSESACPYMSDQLACHKHGRSDLGYQHWRWQPHNCNLK RWDVKEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQSVIPSDKRSMSPNAHLTIFRAEEYNASVEFLWAPLLVESNSDDP VNHRLGERIIRPDSVLKHASLWEHADILVFNTYLWWRQGPVKLLWTSEENGACEELNGQGAMELAMEAWADWISSKVDPL KKRVFFVTMSPTHLWSREWKPESEGNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHP SIFRKFWEPLRPEQLSNPPSYSDCIHWCLPGVPDVWNELLFHLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 4 | 443 | 440 | 9.2E-227 | ||
| PANTHER | 4 | 443 | 440 | 9.2E-227 | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 444 | 412 | - | – | |
| Pfam | 105 | 158 | 54 | 1.8E-22 | ||
| Pfam | 161 | 442 | 282 | 7.4E-83 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0198500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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