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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0198500 |
| Transcript ID | LotjaGi3g1v0198500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT5G01620.1 TRICHOME BIREFRINGENCE-LIKE 35; Swiss-Prot: sp|Q8RXQ1|TBL35_ARATH Protein trichome birefringence-like 35; TrEMBL-Plants: tr|K7KCY1|K7KCY1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0198500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29016114..29022747) extracted from Lotus japonicus Gifu genome v1.2.
AAGCAAAAAATGCAGAGATGGAAATGGAGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTT CATAGCATTCTCAACCTTCCACAGTGAACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAG AAGCTTCCTATGTCAAACCCAACCTCTCTGGTCAACTCAAGCAAGCTCCAGGTGGGTGCACACAACTTGTTTGCTATTAT GCTTCACTGAAAACTTCAAACAGAAATGATAAATTTTGGTCAATTTTTATGCTTTGTGAGTTTGATTTGTGCTTTCTCTT TGACTTGTTGAAATGGGTTTTTCTTTTTTTGGATTTTAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTGGAG TATAGTGGCCGGAAAATTGCTTGGTCTGGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGATGT TTTCTCGGGCAAGTGGGTCTTTGATAATGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATCAAT TGGCCTGTCACAAGCATGGAAGGTCTGATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAGAGG TGATTTCTCTTTGAGCTTTTTTTTCTCCCCTTTGAGCATAGTAAGATCATGGTTTTGTTGGTGCATGAGTGGGAACTAGC CAATTCAAAGTTCCAAGGTCATCATTGTTTTGTGAAGTTATGTATAACCAAGATAGGTTCCGTAGAGTTTCTATTTTTGG TTCAAAGAAAAACACATTAATGCAAATGGGTAAGACAAATCCATGTGAACAATACTACAATGCTACAACATGAAACACTA CAAATATAACATGCTTGCTCACAAAAACATAAACCAATATAACAGGTAGGCAATAGATCAAAACATCCTCCTTAAACAGA TTTGATTTCAAAATCAAGCCTCTAGCTAATTTTTCCTTTGATGCCTCTAATTCCGAGGCCCTCTGCTGGAGCTGGTGCAA AGGAGACCAACCAAGAACAAGCGGCTCAGCCGCTCCAATCTAGCTTTTCAGAGGTAGTCTGAAGTCAATCAGAAGTGGTG AGGGAAAGAGAGGTGGGAAAATGTTAAAGGTGATGGTGGAGAGAGGGAACATAGAAGGTGGTGGTGGTGGTGGTAGCGGC GGCTGGATGAAGGAAGAGAAGGATATGGAAACTAAAACAGAAAGAAAAAATACAGCTAGAAAGTAGAAACTAAAACCCCT CCCTTAGGATGGAGGGAAATCCAACTATGCGGCGGCTGTAGCTTGAAGAAGAGGGTTTTCAGTTTCTGTTTCAGAGAGGT GAGAATTTTAACTAGTTCTGTAGAGTTCCGTTCCAAGTGGGAGTGTGGGACATTTGTTCTATTGTTTCTGTGGAATTGGA GTTAGAAAAATCACAACAATTTGTTCTGCTTAAAAGCATCATATGAAAATGGTAATGATTTTTATAACCAAGTAGGTTCG TTATGCTGGTCTTCACTGATTTCTTGTCTATAACAGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGC TAATGTTTGTTGGGGATTCACTAAACAGAGGGCAATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGAT AAGAGATCAATGTCACCAAATGCCCATCTTACCATCTTCAGAGCAGAGGTAAGAACCCTATGCTTTAATGTAGCCCCCTA TACAATGTTGTCTTCTTCCTTCATTTCACTATTTCTTATTAGACCACTTGATGTTCTAAGACATTGGATTGATGGGGTTT GGTTCACCAGTACCACTGTCTGAGATTCTCCTCATCTGCACGCTGCTAACTTTTGTGCTAATTATCAGGAGTATAATGCA AGTGTGGAATTCCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCCGATGATCCTGTAAATCACAGACTAGGTGAACGGAT AATTCGTCCTGATTCTGTTCTTAAGCATGCATCACTGTGGGAGCATGCTGATATACTTGTTTTCAACACATACTTGTGGT GGAGACAAGGCCCAGTCAAGCTATTGTCTGTATCAGTTTATCACTACACAATTGGATTTTTAACGGGAATTTGTCTACTC GATTCTGATTGGATATTCCAATTTGTAATTTTTCAGATGGACTAGTGAAGAAAATGGAGCTTGTGAAGAATTAAATGGAC AAGGAGCCATGGAGTTGGCCATGGAAGCCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTCAAGAAGCGTGTCTTT TTTGTGACCATGTCCCCAACACATCTCTGGTGAGCACCCAATCTAGATTTTTTATGATCCCATCAGAAAATTTTTTTGCC AGTATGCATTATTGAACATGAACCTTTGGCCAGAGGTTATTCTAATTCTTTATTCAAACTCACATTAGTTAAAAGGGGAC AACATTACTGTTGGCTGGTTTTAAATGATTAGTTCATTATTTCTTCTGCATTCTTAGAACATGTGGCAGAATTATGTTAG TGATTTTCATTCATCTTATATGCTAGTTTTAATTTGGATAATCCAAACCAAAGTTTTAACTTCCTGCCTTCACCCCTCTT CCATGGCAGTCTGCAATTCTGCCAAAATTGTCACTGTAAAAATCTTACTATTTCTGGTTTGAATATTGACTTTCTTTTGA TATCATATATATTGGTCATGTAGTATACATTCTATTGTGTTAAAATATAAAATATGTTTTAGCTGCCAAGTTTTAGCCAC ATAAAGAAAATGTCAGTGTAATCAATGTCATATGTGTTTGTGCATAGTGCATACCCCTTGGAAACCAACCGAACTTCAAT AGAGCCAATAGGACCATTAGAATTTACTTTAGTAGTGTAAATATACTTACACCTACACCCATGACCCAACATATTTCTTC CCCACGGGCAAAGGGACCAAATCCCAAGTCTCATTATGTTCATCGGACAACATTTCCTCCATATCTCGCTGCCAATCAGC ATGTATTAAGGCATCTGAAAGAGACTTAGGGACAAAGGACTTAAAGGTAGATGATAAATTAGTTGAAGATACATAGTAAG AGATAGAGTAGGTGCAAGTGGGTTTACCTTTACATAAGACTATGGGAAGGTCCAGAACACTAGAAGGATCTGTAGACACC GGAGGAGGTTGAAACAAAGGTTGAGTATCCAGTGGAGAATCACCAGTTTTCTGCTACCGACTGTATGTCTTCTAGCATAA TTCGAAACATGTACCAGTGGTCCAGTAGGAGTCTATGGAGCAGGGTAAGTCATGGTATAAGTTACGGAGGAATTATATGA CTCCCACACAGGTAAAGAGAATGACAACCCATCAATGGAGTGGTCCTCAAAGAACTTAACATCAATAGAGACAATATAGC GACCAAGATCTTGAGCGAAACATCGACACCCTTTCAGGGTACAAGAGTAGCCCAAGAGCACACACTTCAAGGACATTAGG TCCAACTTAGTCACTTGAAACCTGACATCAAGAACAAACGATGTGCATCCACATACTCTTGGGGAAGGGGAACAAAGATC AAGAAGGGAAAAGGATAGAATAAGGAACAACTCCATTTAATATAGATGACGACATGCGATTAATTAAATATGCAGCAGTA AGAGCTGCATCTCCCCACGAAATTTTAGGAACTTTCATATATAACACTAGCCTGGGCAACTTTCACAAGATTTCAACTTT TATGCTTAGCCACCCCATTCAGTTCTGGTGTAACAATGCGGGATGGTTTATAAATCATATCATGTTCATTCATAAAAGCA AGAAATGGTACAAACAAATATTCTTTGGCATTATCACACCTGACATTCATATTGCGTACGAACTTCAACACAAAAATTAC AAAATATAATGAACTACTCAAATATGGATTTCAATAAATATAACCATGTTGTATGAGAATAGCCATCCATAAATGTAACA AATGACTTATAATCTAACATAGAAGTCACAGGGCAATGACCCCCACACATCAAAATGGACAATGTCAAATAGGGATGTAG CACTTATAATCAAATGAAGTAAATAAACACTACAGTGATGTTTAGTGAACTGGCATGACTCACTAGTCAGGCTTGATATG GACTCTAATTGAGAATATAGCTTCCTAAGAACACCTAAAGACAGACAGCCAAGGCGACAGTGAAGCTGGAAAGGGGATAA GCTACTGGTAGGAGAAGTTGTTGATGCCTTCAGGGCTCCTTCCACTTGGTACAATCCATCATATACACTTCCTCTACCAG TAGTCCTTTGTGGCAACAGATCCTGAAATTCACAAGAATCTGAAAATAAAGTTAAATAGTAGTTCAAAGTAAGTTTATAT CACGACTAAGTGAGGGAAGATTACAAGTAAACTCAGGTAAATACAAACACTAGACCATCAAAAAGAGTTGTAGACAGGTG TATACTAGAGGAACTGAAGGAAGAAAAGATACTTGAATCCCTAGTTATATGATCAGTAGCGCCAGAATTAGTGGCCCAAC CCATGACGTAGAGGATAGACACGCAATAGGATTACCTGTTTGGACAAATGTTTGGTGGAGGATGAAGGTGAACTAATCAC TCATACCCACCTTACGTCTGTCGTGACTGGGAAGCAGGGTTAGCAAAGTGAGGATTTCTTGACCACTGTGAATACCCCAC ATTTGATCGCTCTGCTTTAGTAGTCCATTCTGGTACAATCACCACGATTTCCTCCGCCTCCACTGTGATTGCCTTGAGTT CTGGAATGGACTACTAAAGCAGAGTGATCAGATGAATCAACATCAGTAGTAGATCTAGGTTCCTTAAAAGAAGAATGCAT GACCTGAGAGAGAACATTAGTGAGATTATCTACCTTTTATGCTCGACTAGATCTGAGACCTCACCACCTCATACTCTAGG CAAGGCTAGATAGCAAACTCAAGGCTATTATGAGTTTCTTTTGTTGGGTTATCATCTCCTCTACAAACTTTCAGGCCAAT AGAGAAGTTAGCTCCTCAATATATTTCTTAAACTCTAAGAAATAGGCCATCACCTTACACTTGTTATGCTTTGGGAAAAA CATCTCTTGCTATAGGAGCTTATGAAAAAAAAAAGAACTCTTGCAATAGGTCATAGACACGATTCAAATTATCCTACCTT CCATAAATAAATTGCAGAAAATCCCACAAATCCTTCATTGTTCTGTAGTGGGTAGTAAGTAATGACCGCATCCCGCTTAT CAACAAAACTCACCAATAAGGCCAAAATACACTTATCCTCTGTGCTGCATTTCGCGGCTACCTTTGGGTCCACTAGACAT CTCTATGTCAAATGTCCATCCTTTCCCATTCCTCGTAAGCTGGCCTCCACAAAATATCTCCACTCCACATAATTCTCACC ATCCCTATCAAGCTTTATATAAGTGTATATGGACAAAGTTGTCATAAATTCCGTTCAGTGACCGGGGCCTTAGAGCTCTC GTCAAGTGCTAAATGCAGTCTCCCTGATATATATAATACTAAGTTAGGAGTGAAGTACATTTTGCAGTACAAAGTACGGG GTACAAGTACATTTGATCATAACCCTAACTCTTAACATCAATGCAAATGAGAATACAATAATAACCAGATAAATGATAAT ATTTTATCATGTGATTTACGTCTATAATGATTCATCCTAACTCTTAAAACACTAAATCTATGTTTTGATTTAAGATTTGT ATTTTTCATATCAATCTTTTCACTTATTTTATATGTTGCAATATAGTCTGCTGCATCATCTTCTGTGTTGTTTTTGTGTC CCATGTCATGTTTGTGCTTCCTGGTTTTTAGATGCCACTTATTGGCCTAGTGGTCACCAGGTGTGTACTAGGTTCCCCTT CTCCCCTCTGGTATGATACAGGCTCAACATTCCCCTTTCCCCAAATTAGGCCTCAATTTGGTTCCTCCCAGATGCTTTAA AAATAAAAGTTTTACTTTTTTATTCAAGTTGTTTATTTAATAAAATTGGATATCAAGCAGCAATACCGGTAGTACCATTC TGCATGCTAATTGCCAAATGCAAGAGAGGTATTAGGTATGATGCAGGTGACATGAAAACTTGTCTACGAATGCCGAATGT TACAGTAACAGAGTTCAGGAAAAAGATGCATTCTCTTTGTTATTGATATTTTCACACTTACTAGTATCTTAACATCAACA TAGGGAATCCATATATCCCATGCTCTATATTTTCTTACTGAAATGAATATTATTCTGATTCAGGAGCCGAGAGTGGAAGC CAGAAAGTGAGGGAAACTGTTATGATGAAAAGGACCCCATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCT ACAATGAGAAGCGTGGAGAAGATCCTAAGCAGTTTAAAATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTA TAGGAAGGATGGTCATCCTTCCATTTTTCGCAAATTTTGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTT ACTCTGATTGCATACATTGGTGCTTGCCAGGGGTACCTGATGTGTGGAATGAGCTACTATTCCACTTATTATAG
CDS sequence (LotjaGi3g1v0198500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGATGGAAATGGAGCAGAAAGAAACCTCCCATTTTTCCTCTGCTTGTTGTTTTCTTCATGGTCTTCATAGCATT CTCAACCTTCCACAGTGAACACAGCATTCAACAAATCCATGAAAACCCAGATCATGTTCACAATCACCAAGAAGCTTCCT ATGTCAAACCCAACCTCTCTGGTCAACTCAAGCAAGCTCCAGAGGTTTTGGATAGATTCAGTAGATGCAACTCCACTGTG GAGTATAGTGGCCGGAAAATTGCTTGGTCTGGCGATTCTCAGCGTTCCGGTCACCGGAGAGCGAGTTCTGAGAGCTGTGA TGTTTTCTCGGGCAAGTGGGTCTTTGATAATGCTTCATATCCATTGTACAGTGAGTCAGCTTGCCCTTACATGTCTGATC AATTGGCCTGTCACAAGCATGGAAGGTCTGATCTGGGGTACCAGCATTGGAGATGGCAGCCACATAACTGCAATTTGAAG AGGTGGGATGTGAAAGAAATGTGGGAGAAGTTGAGAGGTAAAAGGCTAATGTTTGTTGGGGATTCACTAAACAGAGGGCA ATGGATATCTATGGTATGCTTGTTACAGTCAGTAATTCCTTCTGATAAGAGATCAATGTCACCAAATGCCCATCTTACCA TCTTCAGAGCAGAGGAGTATAATGCAAGTGTGGAATTCCTCTGGGCTCCTCTTCTTGTTGAATCTAATTCCGATGATCCT GTAAATCACAGACTAGGTGAACGGATAATTCGTCCTGATTCTGTTCTTAAGCATGCATCACTGTGGGAGCATGCTGATAT ACTTGTTTTCAACACATACTTGTGGTGGAGACAAGGCCCAGTCAAGCTATTATGGACTAGTGAAGAAAATGGAGCTTGTG AAGAATTAAATGGACAAGGAGCCATGGAGTTGGCCATGGAAGCCTGGGCAGATTGGATATCTTCGAAAGTTGATCCCCTC AAGAAGCGTGTCTTTTTTGTGACCATGAGCCGAGAGTGGAAGCCAGAAAGTGAGGGAAACTGTTATGATGAAAAGGACCC CATTAATTTTGAGGGCTATTGGGGAAGTGGTTCTGATTTGCCTACAATGAGAAGCGTGGAGAAGATCCTAAGCAGTTTAA AATCAAAAGTTTCGGTTCTCAACATTACTCAAATGTCAGAGTATAGGAAGGATGGTCATCCTTCCATTTTTCGCAAATTT TGGGAGCCTCTTCGCCCCGAACAATTGTCAAATCCTCCTTCTTACTCTGATTGCATACATTGGTGCTTGCCAGGGGTACC TGATGTGTGGAATGAGCTACTATTCCACTTATTATAG
Protein sequence (LotjaGi3g1v0198500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRWKWSRKKPPIFPLLVVFFMVFIAFSTFHSEHSIQQIHENPDHVHNHQEASYVKPNLSGQLKQAPEVLDRFSRCNSTV EYSGRKIAWSGDSQRSGHRRASSESCDVFSGKWVFDNASYPLYSESACPYMSDQLACHKHGRSDLGYQHWRWQPHNCNLK RWDVKEMWEKLRGKRLMFVGDSLNRGQWISMVCLLQSVIPSDKRSMSPNAHLTIFRAEEYNASVEFLWAPLLVESNSDDP VNHRLGERIIRPDSVLKHASLWEHADILVFNTYLWWRQGPVKLLWTSEENGACEELNGQGAMELAMEAWADWISSKVDPL KKRVFFVTMSREWKPESEGNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPSIFRKF WEPLRPEQLSNPPSYSDCIHWCLPGVPDVWNELLFHLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 4 | 437 | 434 | 4.6E-218 | – | |
| PANTHER | 4 | 437 | 434 | 4.6E-218 | ||
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 16 | 27 | 12 | - | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 438 | 406 | - | – | |
| Pfam | 105 | 158 | 54 | 1.7E-22 | ||
| Pfam | 161 | 436 | 276 | 6.6E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0198500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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