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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0199500 |
| Transcript ID | LotjaGi3g1v0199500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class), putative; TAIR: AT5G17680.1 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A151QY03|A0A151QY03_CAJCA TMV resistance protein N; Found in the gene: LotjaGi3g1v0199500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29112053..29114012) extracted from Lotus japonicus Gifu genome v1.2.
GGTCAGCCTAAGTAATATACATATTGATCAGCCCATACCATACCACAAAGAAATATCCAACGACACACTCTGTCTCTTAA TTCGGAAATTGAATATGGTGTATTTCTTTTTCTTTTGGTCATTTCTGTTAGTGCTGTTTTCATTTGTCACTCGGTTACTT CTCAAACGGAAGGGTGTAGCACTAGTGTCAGACAACGCTCCTCAAACAAACTGGTATGATGCTGTGGACACCCAACAAGA AGAAAAGTATGATGTTTTTGTTAGCTTCAGGGGCGAGGACATCCGTGACGGTTTTCTCAGCCATCTAGCAGTGGCTTTTC ATCAAAAGAATATATATACCTTCGTTGATGAGAGGCTTCAGGGGGGAGAAGAAATATGGCCATCACTTGTTGGAGCCATT GAAGGATCATTGATTTCAGTGATCATATTCTCTGAAAACTACGCTTCTTCAACTTGGTGTTTGAAAGAACTGATCAAAAT ACTTGAGTGCAGAGACAAGTATGGACACACTCTAATACTAGTTTTCTACGGAATAGATCCCACAGATGTACGACATCAGA CAAGGAGTTATGAATCTGCATTTGCTGAGCATCGAAAAAAATTTGATCCGACCATGGTGCAAATATGGAGAGATGCTTTG AATAAATCTGCTAATTTATCGGGAATTAAGTCATCAGATTTTGGGTAAGCTTTTACTATTTCTTTCCAATAAATGTTTAA TACTTTCTTGCTTCTTCTTTTTTGACAAAACTGCACAGTTTGGTAGTATCTTATATTGCAATTTTTTCTGTTACCTTATC AGTTACTTCTTCCACATTTATTGGTTGGTTTCAAGCTAGGACTTTGTTTGTTCATTGAATTTAGTAGTTAAATTAGACCC CAGAAATACAGTTAAGAAGGTTGAGTCAACACACACTTAACTCAAAAGTACTTGTTGGAATTGACAAACCAATTGCTGAT ATAGAAGTCTTGCTGGGTAACAAGTCAAAAGATGCCCGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACCAC TATTGCAGAACAAGTGTTCAATAAAACATGTTCTGAGTATGAACGTAGCTGTTTTTTGTCAAATGTAAGAGAAGATTCAA GAAGACATGGAATAATTTATTTGAAAGCAAGACTTTTTTCCGCACTTCTAGAAGAAGATGTGAAAATTAAGTCACCAAGT GGATTGTCTGAGGATATTAGGAGAAGGATTGGTCGCATGAAAGTTCTCATTGTTCTTGATGATGTGAATGTTTCAGATCA CCTGGAATTTTTTGGAACTATTGATAATTTTGGACCAGGTAGTAGAATAATAGTAACAACTAGAGATAAGCAATTGCTTA TAGCTAAAGATGTTGATGATATCTACAAGTTTGAGATATTAAGTTCAAGTGATGCACTAAACCTTTTCAATTTGATTGCC TTGAACCAGAGTCACCTGGTAACACAGTATCATGAAACATCAATGAGGGTTGTTGATTATGCCAAAGGCATTCCATTAGT TCTTAAAGTTTTGGGTCGTCTTCTTCATGGAAAAGGTGTTGATGTATGGGAAAGTCGGCTAAACAAGCTTAAGCAAATGC CGAGCCAAGAAGTTTATGATGTGATGAGAGTGAGTTATGATGATCTAGATCGAAAAGAGAAAAAGATTTTTCTGGATCTT GCCTGTTTCTTCAATGGAATGAAGATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCATGAAAGTGATAATTCAGT GGCTGATGTGTTAGAAAGGCTGAAAGATAAGGCTCTCATAATTATCTCGGAGGAATCTGTTGTATCTGTGCATGATATTA TACAAGAAATAGCTTGGGAGATTGTTTGTCAAGAATCTAATGAAGACATAGGAAGCTAGAGTCAATTGGCGTATGCTGAT GACATTGATGAAGTATTGGAAAAAGACAAGGTGATAGCCT
CDS sequence (LotjaGi3g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGTATCGGCAAGACCACTATTGCAGAACAAGTGTTCAATAAAACATGTTCTGAGTATGAACGTAGCTGTTTTTT GTCAAATGTAAGAGAAGATTCAAGAAGACATGGAATAATTTATTTGAAAGCAAGACTTTTTTCCGCACTTCTAGAAGAAG ATGTGAAAATTAAGTCACCAAGTGGATTGTCTGAGGATATTAGGAGAAGGATTGGTCGCATGAAAGTTCTCATTGTTCTT GATGATGTGAATGTTTCAGATCACCTGGAATTTTTTGGAACTATTGATAATTTTGGACCAGGTAGTAGAATAATAGTAAC AACTAGAGATAAGCAATTGCTTATAGCTAAAGATGTTGATGATATCTACAAGTTTGAGATATTAAGTTCAAGTGATGCAC TAAACCTTTTCAATTTGATTGCCTTGAACCAGAGTCACCTGGTAACACAGTATCATGAAACATCAATGAGGGTTGTTGAT TATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCGTCTTCTTCATGGAAAAGGTGTTGATGTATGGGAAAGTCG GCTAAACAAGCTTAAGCAAATGCCGAGCCAAGAAGTTTATGATGTGATGAGAGTGAGTTATGATGATCTAGATCGAAAAG AGAAAAAGATTTTTCTGGATCTTGCCTGTTTCTTCAATGGAATGAAGATGAAAGTGGACTCCATAAAAGCTTTATTGAAA GATCATGAAAGTGATAATTCAGTGGCTGATGTGTTAGAAAGGCTGAAAGATAAGGCTCTCATAATTATCTCGGAGGAATC TGTTGTATCTGTGCATGATATTATACAAGAAATAGCTTGGGAGATTGTTTGTCAAGAATCTAATGAAGACATAGGAAGCT AG
Protein sequence (LotjaGi3g1v0199500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGIGKTTIAEQVFNKTCSEYERSCFLSNVREDSRRHGIIYLKARLFSALLEEDVKIKSPSGLSEDIRRRIGRMKVLIVL DDVNVSDHLEFFGTIDNFGPGSRIIVTTRDKQLLIAKDVDDIYKFEILSSSDALNLFNLIALNQSHLVTQYHETSMRVVD YAKGIPLVLKVLGRLLHGKGVDVWESRLNKLKQMPSQEVYDVMRVSYDDLDRKEKKIFLDLACFFNGMKMKVDSIKALLK DHESDNSVADVLERLKDKALIIISEESVVSVHDIIQEIAWEIVCQESNEDIGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 292 | 292 | 5.5E-113 | – | |
| Gene3D | 1 | 121 | 121 | 1.0E-21 | – | |
| PANTHER | 1 | 292 | 292 | 5.5E-113 | – | |
| Pfam | 1 | 199 | 199 | 1.2E-23 | ||
| SUPERFAMILY | 1 | 221 | 221 | 1.77E-48 | ||
| PRINTS | 70 | 84 | 15 | 4.9E-7 | – | |
| Gene3D | 128 | 211 | 84 | 5.6E-6 | – | |
| PRINTS | 162 | 176 | 15 | 4.9E-7 | – | |
| SUPERFAMILY | 198 | 287 | 90 | 8.16E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0199500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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