Transcript — View — Lotus Base

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LotjaGi3g1v0203500.4

Overview

Field	Value
Gene ID	LotjaGi3g1v0203500
Transcript ID	LotjaGi3g1v0203500.4
Related isoforms 3	LotjaGi3g1v0203500.1 LotjaGi3g1v0203500.2 LotjaGi3g1v0203500.3
Lotus japonicus genome version	Gifu v1.2
Description	Protein upstream of flc; TAIR: AT2G28150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp\|Q9LX14\|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr\|K7LTP4\|K7LTP4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0203500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:29692423..29695565) extracted from Lotus japonicus Gifu genome v1.2.

CTTCCTCTCCCTCTCGTTCTCAATGATCTCCCTCTTGCTTCGTCGTTCACAGTAGCTGCTCGCTGTCAGATACCGTAGCT GTTCGATTTCACAGTAGCTGTTCGCTGTCGTTCACAGTAGTTGTTCGATTTCCGTCTTCTCCTCCGCCGTCTCCGTACTC TTTCACCGTTCTCACTGCAAGTACCATCCACAGGTACCGTTCTCACTCCGTACTCTTTGTTTTGGGTATGTGGTTGTAGG GTTTTAAAATTTTCCTTTGTGGATTGTGGTTTTTGAGGGGTTTGTTTGTTTTTTGTGCAGATGTGATTGATAGACTAAAT GCATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATGGTCTTGTAAGAGGTGAGCAAGTTTTTAACACTTTCTATGTCA TTATGTCCTGTTGTTTAATTTGTGTTGAGAAAAAAGAAAGAAAGGGGGAAATCAGAAAACTTGGTGCATGTTTGGATACA CAGTAGATTTTCACCTAGGAATGAAGAATTGATTCTATAAGAAGCTAATCCTAGTTGCTTTTGTGGGAGTGCAATTAATT CTGGAAGGTTTTACGAGAATCCAAACATGCTCTTGATAGGCTTCTTCTTTGCCCCTTGTTTTCCTTTTGAATAATAGTTT AGTAATTACTGCATACAATTTTAATCATTGATATTAGTTTTTCTTGTAATTCAGAAGCTACAATAGTGGATTTGTGTGGC ATGATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAATTGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAA TCCAATTCAGGTAAAGAAGATATTTTGTTTATTCGTCTTCAAATTATAGTCATTTGGTAGGTTCTGAATGATATAGAATG CATGTACCCTTAGCCTTTGTGGCTTTTGCTTTGCAGATAATTTCAGTCCCATTAGCAACGTCAAAATGCAGAACGTGAAG CTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGCATGAATGGGAAAGAGACAAGAAC CTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCCGGAGTCTAGGGATGAAAAGAGCG ACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAGATGCTTCCACTCAGACAGAAGAA CAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGATAGATCATTAGAACCTGAATGCCA TGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGATACCATTTATCCTTCTCCTTCAA CTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAGCTGATGCTAGCAAACTGAGCAGC TTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAGGCCTCAAATTTGCTGATGCAACT GATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTATAAGCATAGGTTTTCTGATTCAA AATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAGCAGAGAATCCAAAGCTGATGAAT CTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAATTGAAGGAAGGAGAGGCACATAAAGTTCT AAAACGTTCTTCTTCCTACAATGATGAAAGGTAAGTCTTGCTTTCAAATATTCTCTTGCAGCATTACAAATTCGCACGTG GAAGAGTTATGCATGCTGGTGTTTTCTTAATTTTGTAAGAAATGGACTAGTCATAATCAAATAGTTATTCAATGTTGAGG AAATAGTATATGGATTGCTTAAGGTCTGATGTAGCAACAGGATTGATATCTAGAATGTAGTAATTCTTTAAGTTTTGAAT TGTGAATAATGCCAGATTAGGAAGAAAACCAGTGATTTGTGCAAGTGGTCTATAGGTGATAATGCTAACTGCTTGAATCT GTTCATAGAAGGCTAATTGAGTTTCTCTCAGATCTGAAAATATTTTTCCAGCTTGAGTTATATTCTCCAACATTAAATGA ATGATTTCAAAAGTAACATAACATCCACTAAACTGTAAATTGTTACAAATCAAAGTCCACACATTGACATTTTGCAAATG CTTTCACTATTTCCCCCATATCACTTAGCATTTTTAGGTTTTTATTAAAATAAATCACTTGAACATCTTCTGTCCCTCTG ATCATGGTTAAAAAGCCTATGTTTTTGTATTTCTTTTGTCAATGGGCTGTTAAAGCTAACAGAAATTCATGAAATATAAG TACTTTCACATGCTTGTTTATATGTTTATTTCTTAAAGGTTACAAAGAATTGCTGTTTTGTGAACATAACATGCTGATTA AAAAAAAGAATACTTGAAATATCTAATATCAGACCACCTCCCTTTTCTCAACAAAAGGAAAAGGAAAGGACAAAAAGGGG TGGAGTGATAATCTGAAAAATAATAAATAGAGGCACATATATCATATGTTATTATGAGCATCATTGCTGTTTTATTTCTT TCTTTTAATATGAGCTCTTTACATGGAGGCTAATCTATATAACATGCCACTGGGGTCAATGATTAATGTGGTTGGCTTTT TGGATTCATGATTTACAGTTTTGTCTTTGGTTATGATTGGATTCTGAATGGAACATGATAGTTATTATTACATTACATCC TGGCCAATGTGTCATCTATAACATAACCAATGCACAAAAGTGCAGGACATATAAAGACCAGAAACCACAAGAAGACAAAG AGGAAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAAGCGAATCC ATGAAATCCCCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTAGGCATATCCTCAGTAACATCTAA CGGTAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGAAGAAGAGG TGATCAAAATAGAAGAAAGTTAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0203500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCTCCCTCTTGCTTCGTCATGTGATTGATAGACTAAATGCATTGAGAGGTAGAGGCATGGCTTCCTTGTATTCATG GTCTTGTAAGAGAAGCTACAATAGTGGATTTGTGTGGCATGATCTTTCTGAAGATGATTTAATTTTACCAGCCCATGGAA TTGAGTATGTCCTCAAAGGCTCTGAGCTCTTTGATGAATCCAATTCAGATAATTTCAGTCCCATTAGCAACGTCAAAATG CAGAACGTGAAGCTGCTGCCGGGGCCAGCTTCTTCTAGAAGTCATGATGAAGCCTCTTCCTCATCTAGCATGAATGGGAA AGAGACAAGAACCTCCCAAGAGGACGAGCTTTCTCAAGAACCGCATACGGGCTCCTCGGATGTTTCCCCGGAGTCTAGGG ATGAAAAGAGCGACTCTCTGAGCTTGGCATTGACAGAGTACAAAATTTACAAGACTGATGGATTGGCAGATGCTTCCACT CAGACAGAAGAACAAGTTAGCAGAACCAGAGCTCAGAAAACTTGTACAAGGGGTGTATCAACAGAGGATAGATCATTAGA ACCTGAATGCCATGAAATATGTCAAGCTGAAGTTCCAGAAGTGAAAGATAATCCGAAAATGTGCAAGGATACCATTTATC CTTCTCCTTCAACTTCAAGCCCCTTATCTTTTGGGAGTAAGGCTGAAACTTTGGAATCTTTGATTAGAGCTGATGCTAGC AAACTGAGCAGCTTTAGGACCCAGGAAGAGGAGGGCGCTCGGGTGCCGCCAACCAACACGAGGCTGAAGGCCTCAAATTT GCTGATGCAACTGATCTCATGTGGCTCGATATCAGTGAAAAACCACAGTTTTGGCCTTATTCCTTCCTATAAGCATAGGT TTTCTGATTCAAAATTCCCTTCTCCGCTGTTCTCCACTTCTTTTATGTTAGGGGAATTTGATTGCTTAGCAGAGAATCCA AAGCTGATGAATCTTAGGTTGGAAGACAAAGAATACTTTAGTGGGAGCTTAATTGAGACTAAATTGAAGGAAGGAGAGGC ACATAAAGTTCTAAAACGTTCTTCTTCCTACAATGATGAAAGGACATATAAAGACCAGAAACCACAAGAAGACAAAGAGG AAACATCCTCAGGACATTCAAAATGCATTCCACGATCAATCAAGGCTTCATTGACCAAGCATCCACGAAGCGAATCCATG AAATCCCCCATTTCTGATGGGCCAAGAAACTCATCGGACAGATTTGATGGATTAGGCATATCCTCAGTAACATCTAACGG TAGCAGCAAAAGAATCTCCGAACCTTCATCAGGGAAGAAGCAGTCAAAGAGGATAGATTCGTTTAGGGAAGAAGAGGTGA TCAAAATAGAAGAAAGTTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0203500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MISLLLRHVIDRLNALRGRGMASLYSWSCKRSYNSGFVWHDLSEDDLILPAHGIEYVLKGSELFDESNSDNFSPISNVKM QNVKLLPGPASSRSHDEASSSSSMNGKETRTSQEDELSQEPHTGSSDVSPESRDEKSDSLSLALTEYKIYKTDGLADAST QTEEQVSRTRAQKTCTRGVSTEDRSLEPECHEICQAEVPEVKDNPKMCKDTIYPSPSTSSPLSFGSKAETLESLIRADAS KLSSFRTQEEEGARVPPTNTRLKASNLLMQLISCGSISVKNHSFGLIPSYKHRFSDSKFPSPLFSTSFMLGEFDCLAENP KLMNLRLEDKEYFSGSLIETKLKEGEAHKVLKRSSSYNDERTYKDQKPQEDKEETSSGHSKCIPRSIKASLTKHPRSESM KSPISDGPRNSSDRFDGLGISSVTSNGSSKRISEPSSGKKQSKRIDSFREEEVIKIEES

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PIRSF	PIRSF031043 View details on PIRSF031043 Search for proteins/transripts with this domain View external data on PIRSF031043	3	406	404	6.8E-102	IPR021182 Show description in modal box View details on IPR021182 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31083 View details on PTHR31083 Search for proteins/transripts with this domain View external data on PTHR31083	4	459	456	3.8E-145	IPR010369 Show description in modal box View details on IPR010369 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF06136 View details on PF06136 Search for proteins/transripts with this domain View external data on PF06136	4	362	359	4.5E-112	IPR010369 Show description in modal box View details on IPR010369 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR31083:SF6 View details on PTHR31083:SF6 Search for proteins/transripts with this domain View external data on PTHR31083:SF6	4	459	456	3.8E-145	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	86	139	54	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	93	108	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	109	139	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	351	379	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	351	459	109	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	403	435	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	436	459	24	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0203500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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