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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0207900 |
| Transcript ID | LotjaGi3g1v0207900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT2G45220.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O04887|PME2_CITSI Pectinesterase 2; TrEMBL-Plants: tr|V7ANF1|V7ANF1_PHAVU Pectinesterase; Found in the gene: LotjaGi3g1v0207900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:30634031..30637897) extracted from Lotus japonicus Gifu genome v1.2.
GGTACCAACTCAACTGTTATGTATTAATATATAAATTGAAAAGTTGTTACTCACACAAATGGAAGGTACAAACGTGCATG AAAATTTATAGAAACAAATCCGAATCTTAATCGGAAAAGTAAGACATGGAGAGCAGTCCATAGTTTGTATGCTTAATTGT CCTACATAAGCACCTCTTCTCTCCTCTATATAAAGGCACCACAATTGATGACAAAAGACACCACCCCTTAACCAAATTAA CCTCTCCTCTAAGGTTTAATTTGATCTTCACCATCCAAATTCTTAATCTCCCAAAATCATTTTCAGCCATGGCATCACTT AATTTGCTTATAACAACCCTTCTAATAGTTCCCATTTTATTTTCCTCTTGTGTTTTTTCCTACTCTTTGAGCTCCATCAA ATCATGGTGTAGCCAAACCCCTTACCCTCAGCCATGTGAGTACTACTTGAGCAACAATGCCTTCAACAAACCCATTAAAA ACAAGTCAGATTTCTTCAAAGTGTCTCTTGAACTCGCCATGCAACGAGCACAAATGGGCCAACAAAACACCCACTCACTA GGCTCAAAGTGCAGAAGCCCAAGCGAAAGAGCCGCATGGGCCGATTGCCTTGAGCTCTACGAATACACCATCGAAAAGCT TAACAAAACCGTGGCCCCTCATGTCGGATGCACACAGACCGATTTCCAAACCTGGCTCAGCACAGCTCTTACAAACCTTG AGACGTGCAGGGCTGGGTTCTATGAACTTGGGGTAACGAACTATGTGTTACCGTTGATGTCCAACAATGTCACCATGTTA TTAAGTAACACCTTGTCCCTAAACAAGGTTGTTCCTTTCCAGCAGCAACAACAACCACCAAGTAACAAAGATGGGTTCCC GACGTGGGTGAAGCCTTGTGACAGGAAGCTGCTACAAACATCATCAGCGGCTTCAAAGGCGAACGTGGTGGTGGCAAAAG ATGGGTCTGGAAAGTACACGAGTGTGAGTGCCGCGGTGAACGCTGCACCCAAGAGTGGAAGTGGGAGGTATGTGATATAT GTGAAGAGTGGGGTTTACAATGAACAAGTTGAGATCAAAGGAAAGAATATCATGTTGGTGGGAGATGGTATTGGCAAGAC CATAATCACTGGTAGCAAAAGCGTTGGAGGTGGCACCACAACCTTCCGTTCAGCTACTGTTGGTAAGTAAAATTTTAACA CAAATTATATATACACTCCATTTAAGGTTAACAAGCTAACAATAATCTGTTCCTAGCTTATCCATCAACCATATCATTAT TAGTTCATTGATCACTTCACTTCATACATTTTGTTAACCAATAACTATTTTTTTTTTTGAAAGTGTTAACCAATAACTAA ATCGTTTGTCAATCACGTTTTTCTTTGTTTATATATTGGTCAACTATAACGTTGATCATATTACTACAATTAAAAATATG ATTTTTTTTATTTCCATGCTCTACTTGCTGAACATATTAATTAGGTGTTAAGGTTCATATTAACTAGAGTAATAAATATA AGTCCATTTAAAAGTAGGACAATTTTCACACTCTAATAAGGTAGAAATATATCTAACTCGAATTCTAAGAGAAAAAGCCC CTTAGTGATATGGAGTCTAAAATTAAAATGTTTGCAGACGGGTATGAATAAAGAAAATGACCACTATACCTGAAATCTAA TTTTTAATATACCAAATGAATTTTATATTATTCTAAACATAGATTAGCCAAGAGCTTTTAGTTAGAAATTAGAATAATAT ATGCTGACAAAAGGACATTAGTAATTAATTAATAATAAATAATAAAAAGAAAATGATAGAGATGTCATTAATTATGGCAT GTTATAGTTTCTTTATATCTTGCGCCAACAGCTTGTATATTAAAGGAAATTGTATTATTAGAAGGAATCTTAATTACTTT ATATAAAAGCTCCATCTTCTCCTGATTAGGGATTGAGGTGTTGGTGGAGAGTGGAGACCACTTTCGATAGTGATTTAAGA TATATTTTCTTGTGGTAATTAAAGTCTTACATGTATATATTTTCTTCATTTATATGCTGTGGAATTGTGAATTGAAAATA ATTGTCCAATTTTCATGTCTATCTATAATTAAGTGTAACACTAGGGGCGAAAATATTAAAAGAAAAAATTAGGGGAACCG ATTCTTTGAGTTACACAAGTCAAAGACATTTTCTGTGATGTTTCCCAATTGTAATTAGGAATTAAAAGTCTTAGACGCAT TTGATTTTAAGAGTTAATTAACGTGGATAAATTGAATTTCTAGTCTTCAAAATTAAAGGAGCACACTTGCCCAAACTTTT CTTATAGAGCAAGGTAAGGGGTTAATAAAGGGCTTATAAAAAAAGGGGTTAATAAAGTATCATGACATGGTTTAAAATCT GGGCAGAATTTGACTTTCAGTGGTCAAAACTATGCATTAAACATGCAGAAAGCGACAGAATCATATCCCTTCTAGATTAT ACATATTCCTTTCATGGCCTTTATAGTTACCACTCTTATCTTTTCTTGAATGGCAGCAAAAAATTGCACACATCATCTTT TGTTCCATATCAGAAAAACACAACTTTGATTTTGTCACATAGTTGAAATTAGATTAAAAGAGAATTATGAAATAGAGTTC GCTTACAAAAAAGATTATGTAACAAAAGCTAAAAGACACACTTCATGTGTTATATAATACATATGAATATAATAACAGTT GGGGCTTAATTTGACTACGCTAGACTAAGAAAAATTTTGTTTACAATTTATTTTTTTGCAAATTAACTTTAACACTAGCA TATTGTAAATAACGTTTACTAAATTTACTACTCTACAGCTGTTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCA GAAATACTGCAGGAGCAGCAAATCACCAAGCTGTGGCGCTTCGTTCTGGTTCAGATCTCTCAGTATTCTACAAGTGCGGC TTTGAAGGTTACCAGGACACACTCTATGTCTACTCAGACAGACAATTTTACAGAGAATGTGACATCTATGGTACAATTGA TTTCATCTTCGGAAATGCTGCTGTGGTTTTGCAAAACTGCAACATTTATGCGAGAAACCCTACTCAAAAAACCATCACAG TCACTGCTCAAGGCCGAACCGACCCGAACCAGAACACCGGAATCATCATCCACAATTCCAAGGTTACTGGTGCCTCAGGT TTCCAGTCGAGCTCTGTTAAGTCATACCTTGGTAGGCCTTGGCAAAAATACTCAAGAACTGTATTCATGAAAACTAATCT TGATAGTTTGATTAACCCTGCTGGTTGGATGCAATGGAGTGGTAACTTTGCTTTGGATACTCTGTACTATGCAGAGTATG CTAACACTGGACCCGGTTCATCCACTTCGAACCGGGTCACTTGGAAGGGTTACCATGTTCTCACTAGTGCATCTCAGGCT TCACCTTTCACTGTTGCCAACTTCATTGCTGGTAACTCATGGATTACAAGCACTGGTGTGCCTTTCACTTCAGGGCTCTA AATTAATGTTTCTTACAATTTGTGATTACATGTTAGAGAATAATCAAATTCTGTTATTCTGAAGATAATAACAAATTCTT TAGAATTATTGAATTTTATTATTCTCTAACTATTTCTAGTTCTTCTAAATTATTTGTTCTGTATAAATGTAGTTCTTTCC TGTACTAGTGAATAAGCCAAGGAAAATTACTTGGCACGGCCAACCAATTGTATTGTTAAATTTGTCTTACTTGTTGTAAA GAATTGTTATTCTTGGTGGAATTGTATTATCAAGTAGATAGAATCAAAGATGAAAGTTTCATTTGGATGTCTCATTTTTT ATTTGTTTTGAACGTTCTCATATTTGG
CDS sequence (LotjaGi3g1v0207900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCACTTAATTTGCTTATAACAACCCTTCTAATAGTTCCCATTTTATTTTCCTCTTGTGTTTTTTCCTACTCTTT GAGCTCCATCAAATCATGGTGTAGCCAAACCCCTTACCCTCAGCCATGTGAGTACTACTTGAGCAACAATGCCTTCAACA AACCCATTAAAAACAAGTCAGATTTCTTCAAAGTGTCTCTTGAACTCGCCATGCAACGAGCACAAATGGGCCAACAAAAC ACCCACTCACTAGGCTCAAAGTGCAGAAGCCCAAGCGAAAGAGCCGCATGGGCCGATTGCCTTGAGCTCTACGAATACAC CATCGAAAAGCTTAACAAAACCGTGGCCCCTCATGTCGGATGCACACAGACCGATTTCCAAACCTGGCTCAGCACAGCTC TTACAAACCTTGAGACGTGCAGGGCTGGGTTCTATGAACTTGGGGTAACGAACTATGTGTTACCGTTGATGTCCAACAAT GTCACCATGTTATTAAGTAACACCTTGTCCCTAAACAAGGTTGTTCCTTTCCAGCAGCAACAACAACCACCAAGTAACAA AGATGGGTTCCCGACGTGGGTGAAGCCTTGTGACAGGAAGCTGCTACAAACATCATCAGCGGCTTCAAAGGCGAACGTGG TGGTGGCAAAAGATGGGTCTGGAAAGTACACGAGTGTGAGTGCCGCGGTGAACGCTGCACCCAAGAGTGGAAGTGGGAGG TATGTGATATATGTGAAGAGTGGGGTTTACAATGAACAAGTTGAGATCAAAGGAAAGAATATCATGTTGGTGGGAGATGG TATTGGCAAGACCATAATCACTGGTAGCAAAAGCGTTGGAGGTGGCACCACAACCTTCCGTTCAGCTACTGTTGCTGTTG TGGGTGATGGATTCATTGCTCAAGACATCACATTCAGAAATACTGCAGGAGCAGCAAATCACCAAGCTGTGGCGCTTCGT TCTGGTTCAGATCTCTCAGTATTCTACAAGTGCGGCTTTGAAGGTTACCAGGACACACTCTATGTCTACTCAGACAGACA ATTTTACAGAGAATGTGACATCTATGGTACAATTGATTTCATCTTCGGAAATGCTGCTGTGGTTTTGCAAAACTGCAACA TTTATGCGAGAAACCCTACTCAAAAAACCATCACAGTCACTGCTCAAGGCCGAACCGACCCGAACCAGAACACCGGAATC ATCATCCACAATTCCAAGGTTACTGGTGCCTCAGGTTTCCAGTCGAGCTCTGTTAAGTCATACCTTGGTAGGCCTTGGCA AAAATACTCAAGAACTGTATTCATGAAAACTAATCTTGATAGTTTGATTAACCCTGCTGGTTGGATGCAATGGAGTGGTA ACTTTGCTTTGGATACTCTGTACTATGCAGAGTATGCTAACACTGGACCCGGTTCATCCACTTCGAACCGGGTCACTTGG AAGGGTTACCATGTTCTCACTAGTGCATCTCAGGCTTCACCTTTCACTGTTGCCAACTTCATTGCTGGTAACTCATGGAT TACAAGCACTGGTGTGCCTTTCACTTCAGGGCTCTAA
Protein sequence (LotjaGi3g1v0207900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLNLLITTLLIVPILFSSCVFSYSLSSIKSWCSQTPYPQPCEYYLSNNAFNKPIKNKSDFFKVSLELAMQRAQMGQQN THSLGSKCRSPSERAAWADCLELYEYTIEKLNKTVAPHVGCTQTDFQTWLSTALTNLETCRAGFYELGVTNYVLPLMSNN VTMLLSNTLSLNKVVPFQQQQQPPSNKDGFPTWVKPCDRKLLQTSSAASKANVVVAKDGSGKYTSVSAAVNAAPKSGSGR YVIYVKSGVYNEQVEIKGKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALR SGSDLSVFYKCGFEGYQDTLYVYSDRQFYRECDIYGTIDFIFGNAAVVLQNCNIYARNPTQKTITVTAQGRTDPNQNTGI IIHNSKVTGASGFQSSSVKSYLGRPWQKYSRTVFMKTNLDSLINPAGWMQWSGNFALDTLYYAEYANTGPGSSTSNRVTW KGYHVLTSASQASPFTVANFIAGNSWITSTGVPFTSGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| TIGRFAM | 6 | 174 | 169 | 1.4E-30 | ||
| Phobius | 6 | 17 | 12 | - | – | |
| PANTHER | 7 | 518 | 512 | 2.2E-298 | – | |
| PANTHER | 7 | 518 | 512 | 2.2E-298 | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| SMART | 25 | 171 | 147 | 7.4E-34 | ||
| Gene3D | 25 | 176 | 152 | 3.3E-16 | ||
| Phobius | 25 | 518 | 494 | - | – | |
| Pfam | 29 | 171 | 143 | 1.2E-25 | ||
| SUPERFAMILY | 29 | 174 | 146 | 1.06E-32 | ||
| CDD | 32 | 173 | 142 | 4.77489E-32 | – | |
| Gene3D | 205 | 518 | 314 | 2.3E-132 | ||
| SUPERFAMILY | 206 | 517 | 312 | 3.38E-112 | ||
| Pfam | 212 | 504 | 293 | 2.8E-138 | ||
| ProSitePatterns | 237 | 256 | 20 | - | ||
| ProSitePatterns | 354 | 363 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi3g1v0207900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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