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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0210700 |
| Transcript ID | LotjaGi3g1v0210700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1; TrEMBL-Plants: tr|A0A1J7FMW8|A0A1J7FMW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0210700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31483981..31486246) extracted from Lotus japonicus Gifu genome v1.2.
AAACCTTTGTCCAAAACTCACTCTACAAAGTACAAATACTCTTTCCCCACTCCATCATTTGTGACTGACTGCATTAACTA CACTGCCTCTAATTCACATCCTCCTCACATTGCAAGAGTGCACACAAAATGGAAGGAAAAGATGAAGATGTAAGAGTAGG AGCCAACAGGTACACAGAGAGGAACCCAATAGGAACCGCTGCTCAGTCTCAAGATCAAGATACCAGTAGCAGAGACTACA AAGAGCCTCCCTCAGCACCTTTCTTCGAGCCCGGCGAGCTGTCATCATGGTCCTTCTACAGAGCCGGCATAGCAGAGTTC GTCGCCACGTTCTTGTTTCTTTACATCACCGTGTTAACTGTGATGGGTGTGGCTAAATCCAAGAGCAAGTGTTCCACTGT TGGTGTCCAAGGCATAGCTTGGTCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGCATCTCAGGTAAAA AATATTCATATACAATATTCAAATTTTAAAATTAAGAGTGAAACACATTCAGGAGGTTTGTTAGAATAACACTCAACTTC ATTTTTATTTAAAATTTAAACTCCACCACAATCATAGTTTTAGAGTAACACACAGTACTGCTTTGGTGGAAGGAACATAG ATTTTAAAGAAGAAAGAAGCTAAGCGCTATTCTGAAATTATTATTTGGGTGAACCATATATTTTAGATAAGAATCAAACT GAGTGTTATTCTGACAAATTGATGGATCAGTGCTTTAAAATTAAAAGCTTGATTGTTGCCTAATAAGGCTTGTGTGTTTT TGGTGATCCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTATCTTTGACCAGAGCAG TGTTTTACATAATTATGCAGTGCTTGGCAGCTATATGTGGCGCGGGTGTGGTGAAAGGGTTCCAACCACACCAATATGAG AGGCTTGGTGGTGGTGTAAACACTCTGAGTAAAGGATATTCCATAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATT TGTGCTTGTTTACACTGTGTTCTCTGCTACTGATGCCAAGCGAAACGCACGAGACTCGCACATTCCTGTAAGCAAAAATC TTCCCTTATATGTATCTTGTCATTGAATCTTTTTTCTTGTCTTTCATGTGGCATTTTCTGCTAACAGATGATTAATTTTC TCGAGTTCGAACTTGTGTTCTCATTTAATCTGATTATGATAATTTTTATAATGATTGTAAGTTGGTAATGATTCTGATTA TAATAATCATTGAACTGAATGAGTCAGATTTTGGCACCACTACCCATTGGTTTTGCTGTGTTTCTGGTGCATTTGGCTAC AATTCCCATCACTGGAACTGGTATCAACCCTGCCAGAAGTCTAGGTGCAGCCCTTATTTTCAACAAGGACCAAGCGTGGG ATGACCATGTGAGTTTTCATGCATGTCCTGTTTAGAAACTCGTTCGAAAATCACGATGAAGTGAAAATCATAGTGAACAA CAACTAAAGCTAAGAGCATTAATTCTATCCAACATGATTTTGCCTTTTCCGTGCTTTTCGAACGAGTTTCCAAACATGGA CTTCTTTATTGATCCTTACTTTTCAGAATTTTCTTTTACTTTACTTTTTCTTAAGTTCATTTTGACTATGTCTCTAGTTT ATCATTAGCACTTGTAGCAGATAGCAATTGATTGTTGCAAGGTAAAAATGGTTAAAATTTCTCAAACTACATATCATTTT GGTGCAGTGGATATTTTGGGTAGGGCCATTCATTGGGGCAGCACTTGCAGCTCTGTATCATCAGATAGTGATCAGGGCCA TTCCCTTCAAGTCAAAGTGATGCAACATTGAAGTTTAAACATGACTTAAAAATAATAACTGGATGAATCCGAGACAGGAT TACAAACACATCTCATCCAATATATATATATATAGATCACCTACATGTCTTACTAATTTATATGTAATAATTATCCGTTC AAAGCTCATTTATATATGTGCACACATGCAATTTATATTGCATGTATTAATATATCTCAAAGCAGGTATTGTGAGTTTAA TTGCGTATTTTTGCTTAAGTCTGAGATACGAAGAATACCTCAAATTTCTTCTAAATTTGAAAGCATCTAACCAACTTGTA TTTATGCTCTTTGACATAGAGGTGTTTACACCAAAATTTGGTAAACAAATAAGAGAATCCAATGATCAATCTGAGGACTG GATTCGAGTCCTCTTGAGCTCTTTAA
CDS sequence (LotjaGi3g1v0210700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAAAGATGAAGATGTAAGAGTAGGAGCCAACAGGTACACAGAGAGGAACCCAATAGGAACCGCTGCTCAGTC TCAAGATCAAGATACCAGTAGCAGAGACTACAAAGAGCCTCCCTCAGCACCTTTCTTCGAGCCCGGCGAGCTGTCATCAT GGTCCTTCTACAGAGCCGGCATAGCAGAGTTCGTCGCCACGTTCTTGTTTCTTTACATCACCGTGTTAACTGTGATGGGT GTGGCTAAATCCAAGAGCAAGTGTTCCACTGTTGGTGTCCAAGGCATAGCTTGGTCATTTGGTGGAATGATCTTTGCTCT TGTCTATTGCACTGCTGGCATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTAT CTTTGACCAGAGCAGTGTTTTACATAATTATGCAGTGCTTGGCAGCTATATGTGGCGCGGGTGTGGTGAAAGGGTTCCAA CCACACCAATATGAGAGGCTTGGTGGTGGTGTAAACACTCTGAGTAAAGGATATTCCATAGGTGATGGCCTTGGAGCAGA GATTGTTGGCACATTTGTGCTTGTTTACACTGTGTTCTCTGCTACTGATGCCAAGCGAAACGCACGAGACTCGCACATTC CTATTTTGGCACCACTACCCATTGGTTTTGCTGTGTTTCTGGTGCATTTGGCTACAATTCCCATCACTGGAACTGGTATC AACCCTGCCAGAAGTCTAGGTGCAGCCCTTATTTTCAACAAGGACCAAGCGTGGGATGACCATTGGATATTTTGGGTAGG GCCATTCATTGGGGCAGCACTTGCAGCTCTGTATCATCAGATAGTGATCAGGGCCATTCCCTTCAAGTCAAAGTGA
Protein sequence (LotjaGi3g1v0210700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGKDEDVRVGANRYTERNPIGTAAQSQDQDTSSRDYKEPPSAPFFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMG VAKSKSKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLAAICGAGVVKGFQ PHQYERLGGGVNTLSKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHIPILAPLPIGFAVFLVHLATIPITGTGI NPARSLGAALIFNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 4.0E-185 | ||
| Phobius | 1 | 60 | 60 | - | – | |
| PANTHER | 1 | 291 | 291 | 4.0E-185 | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| Gene3D | 43 | 291 | 249 | 1.3E-96 | ||
| Pfam | 50 | 279 | 230 | 1.0E-82 | ||
| SUPERFAMILY | 51 | 284 | 234 | 1.03E-64 | ||
| CDD | 58 | 282 | 225 | 4.06426E-80 | ||
| PRINTS | 58 | 77 | 20 | 2.6E-69 | ||
| TMHMM | 59 | 81 | 23 | - | – | |
| Phobius | 61 | 83 | 23 | - | – | |
| TIGRFAM | 62 | 279 | 218 | 6.0E-66 | ||
| Phobius | 84 | 94 | 11 | - | – | |
| Phobius | 95 | 118 | 24 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| PRINTS | 100 | 124 | 25 | 2.6E-69 | ||
| ProSitePatterns | 118 | 126 | 9 | - | ||
| Phobius | 119 | 137 | 19 | - | – | |
| PRINTS | 137 | 156 | 20 | 2.6E-69 | ||
| Phobius | 138 | 156 | 19 | - | – | |
| TMHMM | 138 | 160 | 23 | - | – | |
| Phobius | 157 | 214 | 58 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| PRINTS | 186 | 204 | 19 | 2.6E-69 | ||
| Phobius | 215 | 235 | 21 | - | – | |
| TMHMM | 215 | 237 | 23 | - | – | |
| PRINTS | 222 | 244 | 23 | 2.6E-69 | ||
| Phobius | 236 | 261 | 26 | - | – | |
| TMHMM | 261 | 283 | 23 | - | – | |
| Phobius | 262 | 283 | 22 | - | – | |
| PRINTS | 262 | 282 | 21 | 2.6E-69 | ||
| Phobius | 284 | 291 | 8 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0210700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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