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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0210700 |
| Transcript ID | LotjaGi3g1v0210700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G00430.1 plasma membrane intrinsic protein 1;4; Swiss-Prot: sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4; TrEMBL-Plants: tr|A0A1J7FMW8|A0A1J7FMW8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0210700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31484109..31485840) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAAGGAAAAGATGAAGATGTAAGAGTAGGAGCCAACAGGTACACAGAGAGGAACCCAATAGGAACCGCTGCTCAGTC TCAAGATCAAGATACCAGTAGCAGAGACTACAAAGAGCCTCCCTCAGCACCTTTCTTCGAGCCCGGCGAGCTGTCATCAT GGTCCTTCTACAGAGCCGGCATAGCAGAGTTCGTCGCCACGTTCTTGTTTCTTTACATCACCGTGTTAACTGTGATGGGT GTGGCTAAATCCAAGAGCAAGTGTTCCACTGTTGGTGTCCAAGGCATAGCTTGGTCATTTGGTGGAATGATCTTTGCTCT TGTCTATTGCACTGCTGGCATCTCAGGTAAAAAATATTCATATACAATATTCAAATTTTAAAATTAAGAGTGAAACACAT TCAGGAGGTTTGTTAGAATAACACTCAACTTCATTTTTATTTAAAATTTAAACTCCACCACAATCATAGTTTTAGAGTAA CACACAGTACTGCTTTGGTGGAAGGAACATAGATTTTAAAGAAGAAAGAAGCTAAGCGCTATTCTGAAATTATTATTTGG GTGAACCATATATTTTAGATAAGAATCAAACTGAGTGTTATTCTGACAAATTGATGGATCAGTGCTTTAAAATTAAAAGC TTGATTGTTGCCTAATAAGGCTTGTGTGTTTTTGGTGATCCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTT CTTGGCACGCAAGCTATCTTTGACCAGAGCAGTGTTTTACATAATTATGCAGTGCTTGGCAGCTATATGTGGCGCGGGTG TGGTGAAAGGGTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGTAAACACTCTGAGTAAAGGATATTCCATAGGT GATGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTGTTCTCTGCTACTGATGCCAAGCGAAACGC ACGAGACTCGCACATTCCTGTAAGCAAAAATCTTCCCTTATATGTATCTTGTCATTGAATCTTTTTTCTTGTCTTTCATG TGGCATTTTCTGCTAACAGATGATTAATTTTCTCGAGTTCGAACTTGTGTTCTCATTTAATCTGATTATGATAATTTTTA TAATGATTGTAAGTTGGTAATGATTCTGATTATAATAATCATTGAACTGAATGAGTCAGATTTTGGCACCACTACCCATT GGTTTTGCTGTGTTTCTGGTGCATTTGGCTACAATTCCCATCACTGGAACTGGTATCAACCCTGCCAGAAGTCTAGGTGC AGCCCTTATTTTCAACAAGGACCAAGCGTGGGATGACCATGTGAGTTTTCATGCATGTCCTGTTTAGAAACTCGTTCGAA AATCACGATGAAGTGAAAATCATAGTGAACAACAACTAAAGCTAAGAGCATTAATTCTATCCAACATGATTTTGCCTTTT CCGTGCTTTTCGAACGAGTTTCCAAACATGGACTTCTTTATTGATCCTTACTTTTCAGAATTTTCTTTTACTTTACTTTT TCTTAAGTTCATTTTGACTATGTCTCTAGTTTATCATTAGCACTTGTAGCAGATAGCAATTGATTGTTGCAAGGTAAAAA TGGTTAAAATTTCTCAAACTACATATCATTTTGGTGCAGTGGATATTTTGGGTAGGGCCATTCATTGGGGCAGCACTTGC AGCTCTGTATCATCAGATAGTGATCAGGGCCATTCCCTTCAAGTCAAAGTGA
CDS sequence (LotjaGi3g1v0210700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAAAAGATGAAGATGTAAGAGTAGGAGCCAACAGGTACACAGAGAGGAACCCAATAGGAACCGCTGCTCAGTC TCAAGATCAAGATACCAGTAGCAGAGACTACAAAGAGCCTCCCTCAGCACCTTTCTTCGAGCCCGGGGGTCACATAAACC CAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTATCTTTGACCAGAGCAGTGTTTTACATAATTATGCAGTGCTTG GCAGCTATATGTGGCGCGGGTGTGGTGAAAGGGTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGTAAACACTCT GAGTAAAGGATATTCCATAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTGTTCTCTG CTACTGATGCCAAGCGAAACGCACGAGACTCGCACATTCCTTGGATATTTTGGGTAGGGCCATTCATTGGGGCAGCACTT GCAGCTCTGTATCATCAGATAGTGATCAGGGCCATTCCCTTCAAGTCAAAGTGA
Protein sequence (LotjaGi3g1v0210700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGKDEDVRVGANRYTERNPIGTAAQSQDQDTSSRDYKEPPSAPFFEPGGHINPAVTFGLFLARKLSLTRAVFYIIMQCL AAICGAGVVKGFQPHQYERLGGGVNTLSKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHIPWIFWVGPFIGAAL AALYHQIVIRAIPFKSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 70 | 70 | - | – | |
| PANTHER | 1 | 49 | 49 | 3.4E-86 | – | |
| MobiDBLite | 1 | 43 | 43 | - | – | |
| PANTHER | 1 | 49 | 49 | 3.4E-86 | ||
| PRINTS | 33 | 57 | 25 | 1.7E-19 | ||
| Gene3D | 47 | 146 | 100 | 3.9E-36 | ||
| SUPERFAMILY | 49 | 170 | 122 | 2.88E-31 | ||
| Pfam | 49 | 146 | 98 | 2.4E-31 | ||
| PANTHER | 49 | 147 | 99 | 3.4E-86 | ||
| PANTHER | 49 | 147 | 99 | 3.4E-86 | – | |
| ProSitePatterns | 51 | 59 | 9 | - | ||
| PRINTS | 70 | 89 | 20 | 1.7E-19 | ||
| Phobius | 71 | 92 | 22 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 93 | 111 | 19 | - | – | |
| Phobius | 112 | 134 | 23 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 135 | 145 | 11 | - | – | |
| Phobius | 146 | 167 | 22 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Gene3D | 147 | 177 | 31 | 1.6E-5 | ||
| PRINTS | 148 | 168 | 21 | 1.7E-19 | ||
| PANTHER | 148 | 177 | 30 | 3.4E-86 | ||
| PANTHER | 148 | 177 | 30 | 3.4E-86 | – | |
| Phobius | 168 | 177 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0210700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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