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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0211800 |
| Transcript ID | LotjaGi3g1v0211800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G36930.1 Disease resistance protein (TIR-NBS-LRR class) family; Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A072U1L8|A0A072U1L8_MEDTR Disease resistance protein (TIR-NBS-LRR class); Found in the gene: LotjaGi3g1v0211800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31772122..31774026) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCTTGATCTCACCACAGTTTGTAAAATGGTATTATATTTGTTTGCGCGTACTTATTCTAGGTTCATATTTTACAGA AATGAAAGTGAGGATATCACGAAAGTAGTTGAAGATGTTGCCGATTTGCTAGGCAAGACAGACTTATTTGTTGCTGAGCA TCCAGTGGGGGTAGAAGCTCGCATTCAAGATGTAATTCGACTATTGAAAAGCCAACAATCCAAAGATCCTCTACTACTTG GGATATGGGGGATGGGAGGGATGGGTAAAACAACCATTGCCAAAGCCGTGTATAATCAAATTCGTCGTGATTTTGAGGCT AAGAGCTTCCTCCTAAATGTTAGGGAAGTTTGCGAACAAAATAATGGCATAGTTACTTTACAACAGAAACTTCTTTCTGA TATCTACAAAACCACCAAGACAAAGATAGATAATGTTGAATCAGGAAAAGTTGAATTGAAGAGAAGACTTAGCCAGAAGA AAGTATTTCTTGTGCTGGACGATGTCAATAAATTGGACCAACTGAGGGCTTTGTGTGGAAGTCGTGAATGGTTTGGCCAA GGAAGTAGAATTATCATCACAACAAGAGATGTAAATATAGTTCAAAAGGAGTTTGGAGTTGAAGTTGTATATAGAATAAA AGAGATGGACAACAAGGAATCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGCAACCAGGTCCTGAAGATGGTTTCGCTG ATCTTTCTAGCGATGTAGTTAAATACTGCGGTGGGTTGCCGCTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGG AGGAGGATAACAGAGTGGAAGAGTGTACTGGAGAAACTCAAAATGATTCCCAATAATGAAGTGATGGAGAAGCTTAGAAT AAGTTTTGATGGTTTAAGTGATGATGATATTAAAGAAATATTCCTTGATATAGCTTTCTTCTTTATTGGGATGGACCAAA ATGATGTGATTGAGATATTAAATGACTGTGGGAATTTTACAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTGTA ACTATTGATAGGAAGAACAGGATCGGAATGCATGATTTGCTACGAGACATGGGAAAAGAAATTGTCCGCAAGAGATCAGC AGAAGGGGGCAAGGAGCCTAGTAGATTATGGCGTTATGAGGATGTGCACTGTGTATTATCAAAATACACTGTAAGAACTT ATTGCATCTATTGTTTTTGTTTCTAAACTATCTAAAGTCAGATTGCTAAGTGAATTCAGTTGTTACCAACAATCAGTTGC CTGTCTTGTTTATCTTAATAATTGTGAAAATAATCTTTGCTTGTGAATCGTTTTGTGCTCCATGGTTTCTAGTAACAGAT TATGGGCTTCAAACCTTACAGTTGTAGTCAGTGGATTTTTAACGACCATTTACCTACGATATGTGATTCATTTTTTTTTT TTCTGTTGATTTTGTCTCATAGAGAATAGTGGATGTTCAGGGACTGACTTTGAAGTGTCCAGAAATGGATACAACTTATA ATTTGGATGCCCAAGCATTTGAGAAGATGGATAAACTTAGATTGCTTCAACTTGCTGGCGCACAACTTAATGGAGATTAT AAGTATCTTTCAAGAGATCTTAGATGGCTTTGCTGGCATAGATTTCCTTTAAAATATACACCACCAGACTTTCATCAACA AAGTTTAGTTGCCATTGACTTCAAATATTCCAATCTGGTACAAGTTTGGAAGAAGTCCCAGGTACGAGTTATAATTCTTT AAAAGATAGAGTTTGAATAGTAATAGTGCATGTTGATGCAACAAATTTTACCGTCCCATGTGATACTTCGACTTTATTAA CTACGGAGGAAAACAATAATATCTGTATTAATTGCAGTGACTAAAATGAGCAATACACATATCTT
CDS sequence (LotjaGi3g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATTATATTTGTTTGCGCGTACTTATTCTAGGTTCATATTTTACAGAAATGAAAGTGAGGATATCACGAAAGTAGT TGAAGATGTTGCCGATTTGCTAGGCAAGACAGACTTATTTGTTGCTGAGCATCCAGTGGGGGTAGAAGCTCGCATTCAAG ATGTAATTCGACTATTGAAAAGCCAACAATCCAAAGATCCTCTACTACTTGGGATATGGGGGATGGGAGGGATGGGTAAA ACAACCATTGCCAAAGCCGTGTATAATCAAATTCGTCGTGATTTTGAGGCTAAGAGCTTCCTCCTAAATGTTAGGGAAGT TTGCGAACAAAATAATGGCATAGTTACTTTACAACAGAAACTTCTTTCTGATATCTACAAAACCACCAAGACAAAGATAG ATAATGTTGAATCAGGAAAAGTTGAATTGAAGAGAAGACTTAGCCAGAAGAAAGTATTTCTTGTGCTGGACGATGTCAAT AAATTGGACCAACTGAGGGCTTTGTGTGGAAGTCGTGAATGGTTTGGCCAAGGAAGTAGAATTATCATCACAACAAGAGA TGTAAATATAGTTCAAAAGGAGTTTGGAGTTGAAGTTGTATATAGAATAAAAGAGATGGACAACAAGGAATCTCTTGAGC TTTTTAGTTGGCATGCATTTAAGCAACCAGGTCCTGAAGATGGTTTCGCTGATCTTTCTAGCGATGTAGTTAAATACTGC GGTGGGTTGCCGCTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGGAGGAGGATAACAGAGTGGAAGAGTGTACT GGAGAAACTCAAAATGATTCCCAATAATGAAGTGATGGAGAAGCTTAGAATAAGTTTTGATGGTTTAAGTGATGATGATA TTAAAGAAATATTCCTTGATATAGCTTTCTTCTTTATTGGGATGGACCAAAATGATGTGATTGAGATATTAAATGACTGT GGGAATTTTACAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTGTAACTATTGATAGGAAGAACAGGATCGGAAT GCATGATTTGCTACGAGACATGGGAAAAGAAATTGTCCGCAAGAGATCAGCAGAAGGGGGCAAGGAGCCTAGTAGATTAT GGCGTTATGAGGATGTGCACTGTGTATTATCAAAATACACTGGACTGACTTTGAAGTGTCCAGAAATGGATACAACTTAT AATTTGGATGCCCAAGCATTTGAGAAGATGGATAAACTTAGATTGCTTCAACTTGCTGGCGCACAACTTAATGGAGATTA TAAGTATCTTTCAAGAGATCTTAGATGGCTTTGCTGGCATAGATTTCCTTTAAAATATACACCACCAGACTTTCATCAAC AAAGTTTAGTTGCCATTGACTTCAAATATTCCAATCTGGTACAAGTTTGGAAGAAGTCCCAGGTACGAGTTATAATTCTT TAA
Protein sequence (LotjaGi3g1v0211800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLYLFARTYSRFIFYRNESEDITKVVEDVADLLGKTDLFVAEHPVGVEARIQDVIRLLKSQQSKDPLLLGIWGMGGMGK TTIAKAVYNQIRRDFEAKSFLLNVREVCEQNNGIVTLQQKLLSDIYKTTKTKIDNVESGKVELKRRLSQKKVFLVLDDVN KLDQLRALCGSREWFGQGSRIIITTRDVNIVQKEFGVEVVYRIKEMDNKESLELFSWHAFKQPGPEDGFADLSSDVVKYC GGLPLALQVIGSFLLTRRRITEWKSVLEKLKMIPNNEVMEKLRISFDGLSDDDIKEIFLDIAFFFIGMDQNDVIEILNDC GNFTEIGISVLVQQCLVTIDRKNRIGMHDLLRDMGKEIVRKRSAEGGKEPSRLWRYEDVHCVLSKYTGLTLKCPEMDTTY NLDAQAFEKMDKLRLLQLAGAQLNGDYKYLSRDLRWLCWHRFPLKYTPPDFHQQSLVAIDFKYSNLVQVWKKSQVRVIIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 475 | 457 | 2.3E-196 | – | |
| PANTHER | 19 | 475 | 457 | 2.3E-196 | – | |
| Gene3D | 24 | 198 | 175 | 1.2E-33 | – | |
| SUPERFAMILY | 39 | 301 | 263 | 1.54E-64 | ||
| Pfam | 49 | 272 | 224 | 6.3E-37 | ||
| PRINTS | 69 | 84 | 16 | 1.2E-21 | – | |
| PRINTS | 146 | 160 | 15 | 1.2E-21 | – | |
| Gene3D | 205 | 290 | 86 | 9.0E-7 | – | |
| PRINTS | 240 | 254 | 15 | 1.2E-21 | – | |
| SUPERFAMILY | 277 | 383 | 107 | 1.58E-13 | ||
| PRINTS | 408 | 424 | 17 | 1.2E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi3g1v0211800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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