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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0217800 |
| Transcript ID | LotjaGi3g1v0217800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|Q8RU83|Q8RU83_GOSHI Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32851354..32853424) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGTGAGATCCTTCACATCCAGGGTGGCCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAAGTCGTTTGCGCCGA GCACGGCATCGACCACACCGGCAAGTACGGCGGCGACTCCGAGCTTCAGCTTGAGAGGATCAATGTCTACTACAACGAAG CCAGTTGCGGTAGGTTCGTTCCTCGCGCTGTTCTCATGGATCTGGAACCGGGGACCATGGACAGTGTTAGGTCTGGGCCG TATGGTCAGATCTTCAGGCCGGACAACTTTGTGTTTGGTCAATCTGGTGCTGGGAACAACTGGGCTAAAGGGCATTATAC CGAGGGCGCTGAACTGATCGATTCTGTGCTTGATGTTGTTCGTAAGGAGGCGGAGAACTGCGATTGTCTTCAGGGTATGG GTTTTTCTTTTGTTTTTTGATGGATTGTTGAATCGATTTCGTGTTTTGTGTCTGGTTTTGCTCTGGGTATGTGTTTTATT GTTGTTTTTCAGTGAAATGTTGTAGATCTGTGTGTTTTTCGAGTGATCTGTGGGTGGTTTAGAAATGGGTTTTGTGTTTT CTGATTCCGATTGGTTGTGAACCCTAAACCCCAGAATTTTCTGAACATGTGTAGATTTGAAACCCTAGATTTGAAGGGTT TCGTGGGTGATTTTGAAATGGTACGTTTTAATGAAATGTGTAAACCTGCATTTTAGTGATTGATTATGAACCCTAAAAAC CGTTGTTGAATTGAATTTAGGGTTTTGAGGGTGATTTTGAAATGGTACTTGTTCATGTGTTGTTCAGATTGCGTTTTGAT GATTGATTATTAATTAACCCTAAACCCGAAGTCTTTCAGAAACATTGTTGAATTTGATGGGTTTTATATGTGATTTGGTC ATTGATTATAAGCCCTAATCCTGAATGTTTCTGAAAATGTGAACCTTGTTGAATTTTAAGTGTTTTGTGGGTGATTTGAA GTGCTGGCTGTGTAAACATTGGGTTGTTTAATTGCTTGTTTTGGTTTTTTCTTTTGCATGAACAGGTTTTCAGGTGTGCC ACTCCTTGGGTGGAGGGACTGGGTCTGGAATGGGTACCCTGTTGATTTCAAAGATCAGGGAAGAATACCCAGATAGGATG ATGCTTACCTTCTCCGTTTTTCCTTCTCCAAAGGTTTCTGACACAGTGGTTGAACCCTACAATGCTACTCTGTCTGTTCA CCAGCTTGTTGAAAATGCAGATGAGTGCATGGTGCTTGACAATGAAGCCTTGTATGACATTTGCTTCCGTACCCTGAAGC TCACCACCCCAAGCTGTAAGCCATACATACCCCCCCATTCACCCTTCTTAATATATGCCTTGTAAATTTTGAAGTCTGAT TGATTATATCTGATTGTGGTTGTTTTCTCTGTTGCAGTTGGTGATCTTAACCATTTGATATCAGCAACTATGTCTGGTGT CACTTGCTGTTTGAGATTCCCTGGTCAGCTTAACTCTGATCTGAGGAAGCTTGCTGTGAACCTCATTCCCTTCCCTCGTC TTCACTTTTTCATGGTTGGGTTTGCTCCATTGACATCCAGGGGATCTCAGCAGTACAGGGCTCTGAGTGTGCCAGAGCTT ACACAACAGATGTGGGATTCCAAGAACATGATGTGTGCTGCTGACCCCAGGCATGGACGTTACCTCACTGCTTCTGCCAT GTTCAGAGGCAAGATGAGCACCAAGGAGGTTGATGAACAGATGATTAATGTTCAGAACAAGAACTCCTCTTACTTTGTGG AATGGATTCCCCACAATGTGAAATCCACTGTTTGTGATATCCCCCCAACCGGCTTGAAGATGGCATCCACATTCATTGGA AATTCCACCTCAATTCAAGAAATGTTCCGCAGGGTGAGTGAGCAGTTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCA TTGGTACACTGGTGAAGGAATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAATGATCTTGTGTCTGAGTATC AGCAGTACCAAGATGCAACTGCTGATGAAGATGAGTATGAAGAGGAAGAGGGAGAGTATGAGCAAGAATGA
CDS sequence (LotjaGi3g1v0217800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGTGAGATCCTTCACATCCAGGGTGGCCAGTGCGGCAACCAGATCGGAGCCAAGTTCTGGGAAGTCGTTTGCGCCGA GCACGGCATCGACCACACCGGCAAGTACGGCGGCGACTCCGAGCTTCAGCTTGAGAGGATCAATGTCTACTACAACGAAG CCAGTTGCGGTAGGTTCGTTCCTCGCGCTGTTCTCATGGATCTGGAACCGGGGACCATGGACAGTGTTAGGTCTGGGCCG TATGGTCAGATCTTCAGGCCGGACAACTTTGTGTTTGGTCAATCTGGTGCTGGGAACAACTGGGCTAAAGGGCATTATAC CGAGGGCGCTGAACTGATCGATTCTGTGCTTGATGTTGTTCGTAAGGAGGCGGAGAACTGCGATTGTCTTCAGGGTTTTC AGGTGTGCCACTCCTTGGGTGGAGGGACTGGGTCTGGAATGGGTACCCTGTTGATTTCAAAGATCAGGGAAGAATACCCA GATAGGATGATGCTTACCTTCTCCGTTTTTCCTTCTCCAAAGGTTTCTGACACAGTGGTTGAACCCTACAATGCTACTCT GTCTGTTCACCAGCTTGTTGAAAATGCAGATGAGTGCATGGTGCTTGACAATGAAGCCTTGTATGACATTTGCTTCCGTA CCCTGAAGCTCACCACCCCAAGCTGTAATTGGTGA
Protein sequence (LotjaGi3g1v0217800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDHTGKYGGDSELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGP YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYP DRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSCNW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 222 | 222 | 2.49E-93 | ||
| Gene3D | 1 | 223 | 223 | 8.6E-109 | ||
| ProSitePatterns | 1 | 4 | 4 | - | ||
| CDD | 2 | 224 | 223 | 2.06846E-154 | – | |
| PANTHER | 2 | 221 | 220 | 1.5E-161 | ||
| PANTHER | 2 | 221 | 220 | 1.5E-161 | – | |
| Pfam | 3 | 211 | 209 | 1.6E-70 | ||
| PRINTS | 10 | 30 | 21 | 6.8E-91 | ||
| PRINTS | 41 | 58 | 18 | 4.4E-38 | ||
| SMART | 47 | 221 | 175 | 1.4E-50 | ||
| PRINTS | 51 | 70 | 20 | 6.8E-91 | ||
| PRINTS | 88 | 99 | 12 | 4.4E-38 | ||
| PRINTS | 93 | 104 | 12 | 6.8E-91 | ||
| PRINTS | 106 | 130 | 25 | 6.8E-91 | ||
| PRINTS | 108 | 126 | 19 | 4.4E-38 | ||
| PRINTS | 132 | 150 | 19 | 6.8E-91 | ||
| ProSitePatterns | 140 | 146 | 7 | - | ||
| PRINTS | 151 | 172 | 22 | 6.8E-91 | ||
| PRINTS | 152 | 164 | 13 | 4.4E-38 | ||
| PRINTS | 176 | 189 | 14 | 6.8E-91 | ||
| PRINTS | 190 | 210 | 21 | 6.8E-91 | ||
| PRINTS | 212 | 224 | 13 | 4.4E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi3g1v0217800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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