Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR002453

Description

IPR002453 is a Beta tubulin.

<p>Microtubules are polymers of tubulin, a dimer of two 55kDa subunits, designated alpha and beta [[cite:PUB00000039], [cite:PUB00000978]]. Within the microtubule lattice, α-β heterodimers associate in a head-to-tail fashion, giving rise to microtubule polarity. Fluorescent labelling studies have suggested that tubulin is oriented in microtubules with beta-tubulin toward the plus end [[cite:PUB00006112]]. For maximal rate and extent of polymerisation into microtubules, tubulin requires GTP. Two molecules of GTP are bound at different sites, termed N and E. At the E (Exchangeable) site, GTP is hydrolysed during incorporation into the microtubule. Close to the E site is an invariant region rich in glycine residues, which is found in both chains and is thought to control access of the nucleotide to its binding site [[cite:PUB00002443]].</p> <p>Most species, excepting simple eukaryotes, express a variety of closely related alpha- and beta-isotypes. A third family member, gamma tubulin, has also been identified in a number of species [[cite:PUB00000721]].</p> <p>British type familial amyloidosis is an autosomal dominant disease characterised by progressive dementia, spastic paralysis and ataxia. Amyloid deposits from the brain tissue of an individual who died with this disease have been characterised. Trypsin digestion and subsequent N-terminal sequence analysis yielded a number of short sequences, all of which are tryptic fragments of the C-termini of human alpha- and beta-tubulin [[cite:PUB00006090]]. Consistent with the definition of amyloid, synthetic peptides based on the sequences of these fragments formed fibrils in vitro, suggesting that the C-termini of both alpha- and beta-tubulin are closely associated with the amyloid deposits of this type of amyloidosis [[cite:PUB00006090]].</p> <p>This entry represents beta tubulin.</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Cellular component Microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
Biological process Microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.

Associated Lotus transcripts 35

Transcript Name Description Predicted domains Domain count
PREDICTED: tubulin beta-2 chain-like [Glycine max] gi|356504309|ref|XP_003520939.1| 26
PREDICTED: tubulin beta-1 chain-like [Glycine max] gi|356571899|ref|XP_003554108.1| 26
Beta-tubulin 16 [Salix arbutifolia] gi|460240332|gb|AGH08237.1| 26
RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulingi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN 17
PREDICTED: tubulin beta-3 chain-like [Cicer arietinum] gi|502141952|ref|XP_004504719.1| 18
10
14
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| 23
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| 25
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502119269|ref|XP_004496560.1| 26
Tubulin beta chain [Lotus japonicus] gi|244539475|dbj|BAH82659.1| 26
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain; TrEMBL-Plants: tr|B4FTM1|B4FTM1_MAIZE Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 17
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|Q8RU83|Q8RU83_GOSHI Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 17
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 28
Tubulin beta chain; TAIR: AT1G20010.1 tubulin beta-5 chain; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A0S3RAJ6|A0A0S3RAJ6_PHAAN Tubulin beta chain; Found in the gene: LotjaGi5g1v0005400 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain; TrEMBL-Plants: tr|M5WZG9|M5WZG9_PRUPE Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 24
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 2.86