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Beta-tubulin signature
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | PREDICTED: tubulin beta-2 chain-like [Glycine max] gi|356504309|ref|XP_003520939.1| | 26 | ||
– | PREDICTED: tubulin beta-1 chain-like [Glycine max] gi|356571899|ref|XP_003554108.1| | 26 | ||
– | Beta-tubulin 16 [Salix arbutifolia] gi|460240332|gb|AGH08237.1| | 26 | ||
– | RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulingi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN | 17 | ||
– | PREDICTED: tubulin beta-3 chain-like [Cicer arietinum] gi|502141952|ref|XP_004504719.1| | 18 | ||
– | 10 | |||
– | 14 | |||
– | PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| | 23 | ||
– | PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| | 25 | ||
– | PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502119269|ref|XP_004496560.1| | 26 | ||
– | Tubulin beta chain [Lotus japonicus] gi|244539475|dbj|BAH82659.1| | 26 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|Q43697|TBB5_MAIZE Tubulin beta-5 chain; TrEMBL-Plants: tr|B4FTM1|B4FTM1_MAIZE Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 | 17 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|Q8RU83|Q8RU83_GOSHI Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 | 17 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 | 28 | ||
– | Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 | 28 | ||
– | Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 | 28 | ||
– | Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 | 28 | ||
– | Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 | 28 | ||
– | Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 | 27 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 | 27 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 | 27 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 | 28 | ||
– | Tubulin beta chain; TAIR: AT1G20010.1 tubulin beta-5 chain; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A0S3RAJ6|A0A0S3RAJ6_PHAAN Tubulin beta chain; Found in the gene: LotjaGi5g1v0005400 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain; TrEMBL-Plants: tr|M5WZG9|M5WZG9_PRUPE Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 | 24 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 | 28 | ||
– | Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 | 28 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
mobidb-lite | MobiDBLite | 1 | 2.86 |