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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0218500 |
| Transcript ID | LotjaGi3g1v0218500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G09230.1 myb domain protein 1; Swiss-Prot: sp|Q42575|MYB1_ARATH Transcription factor MYB1; TrEMBL-Plants: tr|A0A0S3SWF3|A0A0S3SWF3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0218500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32931821..32938563) extracted from Lotus japonicus Gifu genome v1.2.
CACAGTGTCACTCACTTGATGTTAAAAAGTACCGAGACATTGGCGCGTACAATTCTACTCGCTGTCTTTCTCTTTCTCAC TCTTCTCTTTGTCAACTGACGTCAGAAATGGAACCGGAAGAAGCCGCCGACGGAAGCGGCGACGAGGGGATGCCGGGGTT AGCCGAAGGTGGCAGCAGCGAAGGCGGCTGCAGAGACAGAGTGAAAGGTCCTTGGTCTCCGGAAGAAGACGCCATTCTGA GCCAACTGGTGAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGCAAGTCTTGC CGCCTCCGGTGGTGCAATCAGCTCGACCCTTCCGTCAAGCGCAAGCCCTTCACCGGTGCGTAACTAACTAGTTTCCTTGG AATTTGATTCTGTTGTGAAGTTCTTATCTATTTTGAATTTGGTAGTGCATTTCGATTCTCAGTGTACATTGTTGTTCCTT GGTTGATCATTAGTGTTAAGTAATGCCTTTCACCTAGATGTTACTTGTTACTTGATCAATTATCAAGTGTTAGGTTATTG GGATGGTGGTGGTGGTGGTGGTTACTGTATCTAGATTACTTGCTGAATGGTGTTCTTGTTTCTTGCCATTGACCATTGTC ATGTGGTTCATGTTTGACAAGAGGTCTCTCCTCTCTCTTGCTTGGAGGAAACCAGAAAATTTGGGTAGAGGGATTTAGGA ACCAGAAAAATTAGGTATAGAGATTTAACACATCAAACAAAATCAACAATGACTAATTGAAGAATGTAGTATAAAATTTT GAAGGGGACAAATACTATTCTATTAACAAAAGTTTTTTCTCCCGGGGGCGACTAACCCATTTGTAATGAATGCATGTGGT TCCGTCCATGCTCTCGTGTCTTGCACTTGAACCAATCCGGCTAGTAGGACATGCAAATTTTGTCATTGAACAGGAGGATT GCGCAGTCATAAGAAGAGACCCCTAACTGTAAATAGGGTTAGAGCCTGTTTTGTTTCCACGTGTCTGATGCTCCAAATGG CCCCTTGGTAGCAACATATTTAGAAAACAATAAACTGAATATTCTGGACCTTCACCAATTGGGCTTCTAGAACCTTGAAA GGTTTTAAATTCCAATTGTCGTTGTCCTTATGTCAGTCACAATTTTTATATCCTGGACAATTGCAGCCAATGTGGTTGCA TTTGTGGTAGTGATGTGGTTGTCGAGACTACAAAAACCTTGATGTTGTGAGTGCAGTTACTTAGACCATTTAAAACCATG AAACCTTGTATTTTGCAGCTAGTGGATTTTTCTTCTGGTCCATTTTTGTGATGTTTGATTTTGAAAATAGGAAATCGAAT TTGTAATTATGGTTTGTTTGATGTATTCTTTGACTTTACATTACTAATATGTGGTGAGCTTGCTAAAATGACATCCCATC AACAAGTTAAAGGAATTCATTCCTAAGCCTTATCTCAAGTGGCACAGGTAACTAGTCAATTCATAGAAAGAGAGCAGAGT ATCAGAGAAGAATAGAAAAAGCACTTCTATAATGGTTTACTGAATCACAGAGGCCAAAGGATTCCAGGTAGTTCCCATTT TGTAACTGGGCCACTACTTGATTCCCAAGACTACCAAATTTGAATGCCTCTTCCTCTAACCCTCTCATCCTATTTAGCTT AAATGCCTACTTTTTACAACTGCTCAACCAATTCTATAACTGCTCTAACCAACGACTCCAGGCCCATTGATGCTATCCCC TTAAGTTCCATCTAGTCTTGAAGGTTGAAATCGGAGAACTAGCTTTTGACTGTTGCAACTTAAAACATCCTTCCCACAAT CCCACTGTACTTCTACCTGGTATTCCATCTTAATAATCTTCCTATTCACATCCACCTATTCATATTCTGCCAAAACTGTA ACCCTCATATTGTTTTCTTAGAACTTGTTCATGGGACCAAATGGCTGGCTGCACTGAAAACATCTAACCTCTTCCCTTCT TCCTTACATATTCCTGCTATATTAGCTGCCTAGTGATAGAGCTGGACCCGACATAGGATGAAGTGATGAACATATTGATT TTATTGCAAAAACAATCCTGGTCATGGATTAGTATTGTTGAAAAGTCCCACATTGACTAGAGATATGACCTAATAAGTGT TTATAAGTGGTAGAGAAACCCTCGCCCCTGAACTAGCTTTTGGGGGTAGAGTTAGGCCTAACTCGAGTTCTAGAAAGAGA GCATTGGGCATGTGCACTGTCCAAGCTTCAAGTTCTTGCGTGGGGGAGCATGCTAGAAATATAATATAAAATCTTAAATC AGTCATGTGTCATTTACCCAAGAGCTTTAGCTTTTGAGATAATTGTTTTATGACAAGTATCAATGCGATACAGAATCATA TAGCAATAATGATGAACTCTCTCCCTCCCCCACTCTCTCTCTCTAATTCTCAGGTGTTTGAGAGACTTGGGGTTTGTTTG ATTACAGTTTTTGAAAACTGTTTTCTGTTTTTAAAAACTGAAAAATTGAAAAACATGTTTGCTTTTAAAAACTGTTTTCG GCAACAGTTCTCATTTTCAGTTTTTAAAACTCTAATACCAGAACAGCTAAAAGATGTTTTCTGTTTCAGTTTTTAATTTT TAAATTACAATTTTTTAAGTGTTGGAAAACATCTAAATCAATCAGTTTTTTATTGAAAAACAATTTTCAAAAACAGTTTC TGAAAACGGTTTTTAAATACAGTTTTCAAAAACTGCAATCAAACATGCCCTTGGTTTTCTGGCTCTCCAATTTCCTATTC CAAGTCTGTAACCTCCCTCTATTATTTCTCTTGTATTGTTTAGATACACTGTCCTGTAATCTAAGTTCCAACTGACTGAC TGTTGATACAGTTTTCAAATAGTCTGTCACCAAGGTGGCCAATCTTGGTACACTCTGCCTAGACTCCTTTTCCAAAACCT TCAAACTATACAACATTACCAACAACTGAGCCTTTCCTTCTAGGTGGAGTTTTCTACATGAATCAAATCAAATGACACCA AGATTCTCTGTTATGTATTAAGGAATCTTTGAACCTTAGCTACTGTCAAATTTTCGTCCAAAGTCTAGCTTTTTCTTCCT CAAGAACTGGAACCAGCTCATGGCTGCTCATTAACCCGAGTTGCTGCTGAAGAATCTCTGCATTTGGACTACCCAACCCA CCGGGTTGCTGCCATCAATTTAGTCAATTCAATCTTCCTTGCTCAGGATTTCCATTCATAGCAGAAGGACTCAAAATCAA TTTGCAGTTGTAACTCTACTTTGTCTTGTTTACCTGCAACTTTGGCATCTCATAAGTGGGTTGTTCACTGACTTCTTCCA CCTCAAGGCTAACACCGTGGTTCCTCATTCCTTATATACCATACCATCCATCTTCTGAATCTCCATCACATTAGAGGCCA GGGTACATGATTGAACCCCGTAATCACTGTTATGAGTTATCTTCTTCAAGTACCCGACCGAATTTTTTAAAGCTGTTATC CTCTGTTCATTCGATGAGACATCTGGCAGGTCAGATCAGAATTGTTACAGCCCAGGATTGAGATAATGATAAATATCTTG GGAACCAAATACTCCATGATATGAATACTTAATGACTTTTGTCTTAATTTTTTGTGATTTCTGAAATTATAATGGCAAAA ATGACGTATTAATCAAATTAGGTAATATAAATTGGATAATTTAGAAACTTGAAAAATTAAACGAACTCGTTTGCTAGTTT AAGTTTGGGACCTAATTTGTTATTATGCCTCTGATAAATCTGGTTTATAAGCAACTTCAGCAGCATATGACTCAAAGCTA TTGGCAGGCTTGCACACGATGAGGACTAGTTATATCGGATTGGGTTGTTATGTCTGTCATTTAGCTTTTTGTGCTTTTAA AGTTTCTCCTATTTTAACTGAGTTAATGTTTTTTATGTTTTTACCGTTTCAGCTATGGAAGGTTTAATAATTATGTGAAC CTTCACATCTACTGTCTAATGGATATGGATAGAAATCCCTGATTTTCATTTCTGAACTTTCTTAACACACTGGCTTTGTT AGGACTTAGAAAACCCTAACAGCAGCCACAAGGTAAAAGGAGGAGAAAAGGAATATTTTTTTGGTATTTTTGAATATTTA AAATTGGGAAATAGACAAGAAGAGAGAAGAGGTAAAGAGAGAGAGGGATAGGAAAAACAATTGTAATGGATTCACAAGAT GGAGAACCTTCTTTCATGAGAGAATCCCTTCCAAGGGTGAAACCTCTTTACAAATCTAAGACCCAAATCATACTCTAACT TAAGGAGAGTACTCTCCTATAACAAAAGTAAATAAACAAGAATCAAATAAATCTGGCCTTTGAGAAATAATGAGATTAAT GAATTCCTTGTCAAATTCTTTACATAACTCAAATCCAAAGTATTCTTTTGTACGCTACTGGTCAGCATCTGCAATAAAAA AAATGCTGAGAACAATGTTTTTTTTTTCCTTCTTAGAATATCAGTCTACATAAAGTGGTATATGAAGAAAAATTCTGATC CCTTATGATAGTATTAGAGCTCTTTACTATCCGTTTATTGTCCCACAAATGTGTTTTCTGCAATCTGCAGCTAAAAGTAA GTCCCCTTGCTTGGTATTATTATTATTATTTCTATTTTTTTTTGTGAAATTGCCAACAGGAACAAATAATAGCTGTCTAC AATCTACATTATCTTATGATTCAAGGCATTATAAAATAAAATTAATGTAGAAATATGATGGTAAGCTAGCTTCCAGCATG CAATGTTGTCTGGATTAGAATTAGAACATTTATATTTGCTTCGAAACTGATCTATTAAATCTTATTGTTCCACATTCCTG AAAATCTAGACAACATAATACATTTATTTTCAGATGAGGAGGATCGGATTATAGTTGCTGCTCATGCAATCCATGGGAAC AAATGGGCAGCCATCGCCAAGATTCTTCCTGGAAGAACAGACAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCG TCGGGGAGTTGAACATGATAAGATTAAGTTAGAATCTGGAAACATGGTGGAAGACCTTAGCTTGGACAAAGCCAAAGCAT CATCAGAAGAAACTCTATCATGTGGAGATGTAAATTCCTTAAAATCCTCAGAGGGAAGAGATGTCAGTTCTATGGAGATC ATCGATGATAAATGTGAAGACAAAGCTCAGACTGAGGTTCAATTATACCATGAAGTCAAGGATCCACCAACCCTTGTTCG GCCGGTAGCACGTGTAAGTGCTTTTAGTGTATATCACTCTTCCAATGGTTTACAGCCTTCAACATCAGTTCAAAGACCTG TTCCTATGCAAGGTCCCATGTTACAATCATCAAAACCAGACTTTGAACTGTGTAAAATGCTTGAAGGAATTTATGGTGAC CAGTCAGTGCCTTGCCAGTGTGGCCATGGATGTTGTGCTGCTCCCAATGGTAAAAACTCGAAAAGCTCTTTGCTGGGACC AGAATTCATTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTGCAGACATCAGTAACCTTG CTTGGCTTAAAAGTGGATTGGAGAGTAGCAACGCAAAAATGGTGGGTGACACAACTGGCAGGGTACTATCTAATGGATCT CAGGTACATAGTGGCCATTAGAGTGCTGAATAAATTATCAGTAGTCCATGAAGGCTATACTGATATCAACCTGTTTGCCC TGCAAATGTGCTTGTTGTAGGCTATGTGAATCATTGTAATAATGTAAATGGATTTGCTAGGTAGAAGTAGGATATGCTCA TGAGTTAAAAGAACACTTATTTTTGTTTTCTTGGTGTTGACTAATTAGGACTTGACTTGAGAACCTGCAATTCCTTACAC ATGACTATTGTAGGGGGAAAATTACTTAAATTAATTTAAGTTGAAGGAATTTTAAGCTGTTGTAACAACAATGTTATATG TTACGAAGAAAAGTTGCATGATGATGTGGCAACGCTAACTATGTTACTTGGAGGAGATCATGAGGGATAGTTGATAACTA AAATACTTCTTGGGTTTTGTATCATAACATTTAGTATTTTTCTTTGTTGTAATGCCCTAGTTCATTTTGTTCCACAGCAT GAACCCTAACACGATGGTCGTCCTTGATTGCAAGTCTTTCTTGCACCTCTTTGACTTGACCCCATGTTAGGGCATCAGAG ACTTGCGAACGTGATCTTGAGTCAGTTAAGAACAAAGCCAAGATGTGAGCATTGTCATTGTATGTTTATTTAGACAGGTT ACACGAGTTTGATGGCTACATTGCGGAGGAAGAAAATATAAATAAGCAGAGGAAGAGGGGAACTTTGCAAGATGGAGTGA TTCAAGTTCAGAAAACAATTGAACCTTCAATGAATCCAACGGTGTTCCGGGGTGGGTTTTTTCTTTTCTTTTCTTCTTGT CATGATATGGTGTTGGTTGGAAACTTGCTATCTCAAGTGTGTTTTAATCAACCAATTCCAGTGAAGGGTGAAGAATTGAA CTATTGATTCAAATTTCACCAGAAATAGAAAAAACAAATTTGGGGGTCTCTTGGAATTCGATTATTATAGTTTGTAATTA AAATTTTCCCAATAAACTATTGATCTTGTCGATGATTAATATTCTTATTCATTATTTACATGGTTGGTAAAAAAAAAAAA AAATTATGCATACCAGTTTTTCG
CDS sequence (LotjaGi3g1v0218500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCGGAAGAAGCCGCCGACGGAAGCGGCGACGAGGGGATGCCGGGGTTAGCCGAAGGTGGCAGCAGCGAAGGCGG CTGCAGAGACAGAGTGAAAGGTCCTTGGTCTCCGGAAGAAGACGCCATTCTGAGCCAACTGGTGAGCAAGTTCGGCGCCA GAAACTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGCAAGTCTTGCCGCCTCCGGTGGTGCAATCAGCTCGAC CCTTCCGTCAAGCGCAAGCCCTTCACCGATGAGGAGGATCGGATTATAGTTGCTGCTCATGCAATCCATGGGAACAAATG GGCAGCCATCGCCAAGATTCTTCCTGGAAGAACAGACAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGG GAGTTGAACATGATAAGATTAAGTTAGAATCTGGAAACATGGTGGAAGACCTTAGCTTGGACAAAGCCAAAGCATCATCA GAAGAAACTCTATCATGTGGAGATGTAAATTCCTTAAAATCCTCAGAGGGAAGAGATGTCAGTTCTATGGAGATCATCGA TGATAAATGTGAAGACAAAGCTCAGACTGAGGTTCAATTATACCATGAAGTCAAGGATCCACCAACCCTTGTTCGGCCGG TAGCACGTGTAAGTGCTTTTAGTGTATATCACTCTTCCAATGGTTTACAGCCTTCAACATCAGTTCAAAGACCTGTTCCT ATGCAAGGTCCCATGTTACAATCATCAAAACCAGACTTTGAACTGTGTAAAATGCTTGAAGGAATTTATGGTGACCAGTC AGTGCCTTGCCAGTGTGGCCATGGATGTTGTGCTGCTCCCAATGGTAAAAACTCGAAAAGCTCTTTGCTGGGACCAGAAT TCATTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTGCAGACATCAGTAACCTTGCTTGG CTTAAAAGTGGATTGGAGAGTAGCAACGCAAAAATGGTGGGTGACACAACTGGCAGGGTACTATCTAATGGATCTCAGGT ACATAGTGGCCATTAG
Protein sequence (LotjaGi3g1v0218500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPEEAADGSGDEGMPGLAEGGSSEGGCRDRVKGPWSPEEDAILSQLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLD PSVKRKPFTDEEDRIIVAAHAIHGNKWAAIAKILPGRTDNAIKNHWNSTLRRRGVEHDKIKLESGNMVEDLSLDKAKASS EETLSCGDVNSLKSSEGRDVSSMEIIDDKCEDKAQTEVQLYHEVKDPPTLVRPVARVSAFSVYHSSNGLQPSTSVQRPVP MQGPMLQSSKPDFELCKMLEGIYGDQSVPCQCGHGCCAAPNGKNSKSSLLGPEFIEFSEPPSFPSFELAAIAADISNLAW LKSGLESSNAKMVGDTTGRVLSNGSQVHSGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 5 | 333 | 329 | 5.3E-153 | – | |
| PANTHER | 5 | 333 | 329 | 5.3E-153 | ||
| ProSiteProfiles | 28 | 79 | 52 | 19.841 | ||
| SUPERFAMILY | 30 | 126 | 97 | 9.68E-31 | ||
| Gene3D | 32 | 85 | 54 | 4.3E-22 | – | |
| SMART | 32 | 81 | 50 | 2.6E-15 | ||
| CDD | 35 | 77 | 43 | 4.57406E-15 | ||
| Pfam | 36 | 93 | 58 | 8.0E-17 | – | |
| ProSiteProfiles | 80 | 134 | 55 | 26.562 | ||
| SMART | 84 | 132 | 49 | 3.1E-17 | ||
| Gene3D | 86 | 147 | 62 | 3.9E-20 | – | |
| CDD | 87 | 130 | 44 | 9.67785E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0218500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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