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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0219200 |
| Transcript ID | LotjaGi3g1v0219200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650; TrEMBL-Plants: tr|K7KDK0|K7KDK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0219200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33026111..33030847) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCCTAGTCCCTACCTGTGAAATGTAGAATGAACGTGACGTGATTCACACCCACCATATATGAGAGAAACTGCATCAA ACCAGCAAAAATGGCTTCAAGGGTAAATGAAATAAACACACAAATAAATTTCATGATACATATCCTAATCAAAATCAAAA TCAAAATTAACTTATTAAAATCTGAACTTGACACCACCCAAGTTACATACCCTCTTAATCATATCAAAAAATGTGATGAC TTGTTGCTACTTTATTTTTGCTTAATTTTTTCAACTATGTATAAATCACATTTTTGTTCTGTTCTTATCTATGTGTTCAC ATGATTCACCCTTCTGTTTTGACATTTCACTTTCAGAATCTTTTTAGATTTCGCCACAAACTATGTGACTCCAAAGCAGT GGCTCAACTTATCCAAACCTGTGCACAAGCCAAAGAATTGAGCAAAGGAAAACAGTTACATGCTCAGCTGATCCGAGGAG GGTGTTTACCATGCACCTTTCTGACAAATCACCTCCTCAATTTGTACTCCAAATGTGGAGAGCTTGATTATGCTATCAAG CTGTTTGACAGAATGTCTAAGAGAAACATGGTCTCTTGGACAGCTATGATTACTGGGTTTTTTCGTAGTTTGAGGTTTCG GGAGGCTTTGGATACCTTTTGTCAAATGAGGGCTGAAGGAGAGACAGCCTCGCAATTTGCACTTTCTAGTGTGCTTCAAG CTTGCGCCTCTCTAGGGTCAATTCAGTTTGGGGTACAGGTGCATTGTCTCGTTGTGAAAAGTGGGTTTGGCTGTGAACTG TTTCTGGGTAGTAATCTGACTGATATGTATTCGAAGTGTGGGGAGGTGTCTGATGCTTGTAAAGTTTTTGAAGAAATGCC TTGTAAGGATGAGGTGTTGTGGACCTCAATGATTGATGGCTACGTGAAAAATGGAAATTTTGAGAAAGCTTTAATAGCTT ATAAGAAAATGGTCACTGATAATGTCTTTATTGATCAGCATGTATTATGTAGTACTTTGAGTGCTTGCACTGCACTTAAG GCTTTTAGTTTTGGGAAGTCCCTGCATGCAATTATTGTGAAGTTTGGATTTGAATATGAGACTTTCATAGGAAATGCCTT AACAGATCTGTATTCAAAGTCTGGGGATATGGTAAGTGCTTCAAATGTCTTCCAAAGTGATTCTGGTTGTAGAAACATAG TGTCTTTTACTGCTATAGTTGATGGTTATGTTGAGATGGATCAACTTGAGAAGGCTTTAAATGCTTTTATTGACTTGCGA AATTCGGGAATTGAACCTAATGAGTTCACTTTCTCTAGCTTGATCAAGGCTTGTGCTAACCAAGCAAAACTAGAACATGG GAGCCTGCTCCATGGCCAAGTTGTCAAATTCAACTTTGACAGAGACCCTTTTGTTTCTTCTGCCCTAGTTGATATGTATG GAAAGTGCGGGTTATTTGACCACTCAATCCAATTGTTTGATGAGATTGAAAATCCAAATGATACAGCCTGGAATACATTG GTAGGAGTTTTTGCACAGCATGGTTTAGGAAGAAATGCCATTGAAACTTTTAATGAGATGGTCGACAGAGGGCTGAAACC AAATGCAGTAACATTTGTGAACCTTTTAAAAGGATGTAGTCATGCAGGAATGGTTGAGGATGGGCTAAACTACTTTTATT CTATGGACAAGATTTATGGGGTAATGCCTAGAGAAGAACATTACAATTGTATTATTGATTTGCTTGGTAGAGCTGGGAAG CTTAAAGAAGTAGAAGATTTTATAAATAGCATGCCTTTTGAACCAACTGCTTTTGGCTGGTGTTCTTTTCTTGGGGCTTG TAAAACCCATGGTGATAAGGAAAGGGCCAAACTTGCAGCATACAAATTGATGAAGCTTGAACCTGAAAATAGCGGGGCTC ATGTTTTGCTTTCAAATATTTATGCAAAAGAAAGACAATGGGAAGATGTAAGATGTTTGAGGAAAATGATAAGAGATGGC AACATGAAGAAATTGCCAGGTTACAGCTGGGTTGATATTGGAAATGAAACTCATGTATTTGGGGTTGAAGATTGGTCTCA TCCTCGAAAGAAAGAAATTTATGAAAAGCTTGATAGTCTTCTTGATCAGATAAAGATTGTTGGCTATGTTCCTCAAACAG AATCAGTTCTGATTGAAATGGATGACACTTTGAAGGAGAAGCTTCTTCATAATCACAGTGAAAGGATTGCTGTGGCTTAC TCATTACTAGTCAGCCCCATTGGGAAGCCAATCATTGTCAAGAAAAATTTAAGAGTTTGCTCTGATTGCCATTCTGCGTT CAAATATATTTCTAAGGTCACTGAGAGAAATATCATTGTCAGAGATATCAGCAGGTTTCATCATTTTTCCAATGGTTCTT GCTCCTGTGGAGATTACTGGTAATGCTTTCAAGTCTGAAGGTTTATAAAGAGATATGATCATATGGAGCTTCATTCTAGA AACCACATTGAGGAATTTCCAAGGACCTGCTTATATTTTAACAATTGTTTCACTTGCCATTCAAAACTAGTAGCATATCA TTACTGGCTATTTTATTAATACCAGTGGTGAGTGTTCAGGTCTTCATGGTAACATTAACATGTCATGTGAAATATTTAGG ATGGGATTATTCAAATTTATTTCTTCTTGGATGCCTGGCTGCATTCGGTTTCTTATCTTATTATGCATCACATGGAAATT GGTAAGGCACTTTGACAAGAGTTAATGTCCCTGGAAAGAATAGTAACCAAGGATGATCGATTGGCTTCAACTTCAAATGC TACTAGTGTCAATCCACCTAGTGTTGATGCTTCAGCTACAATATCGGTGACAAGTGAGTTGGAACAAATGATGACTTCTG CAACAACATATAAAGTGTCTGCTGCTGTTGTTGGGATTCCACGCATACTAGAGATATGGCTTAAGATGTTCTTATAAGGC TTGAGCGATCCTCACACTGCAAGCTAGCTTTGAGGATTGAGTTAGGCTTAATCCAACTTCTATTATGGTATATGGGGCTA CCGCAGATATTAAATCCTGCAAATTGCTCTAGTTGTCAACTCTTGAGCATAATGGGGTGGTTTTTTGATTCAACACAGAC TAGAGATGTGTCTAAAGATGTTCTTATAAGACTCAGGCAATCTTCACACCTTGAGCTAATCTTTAGGGTTGAGTTAACCC TTAACTGAATTCTAATAGCTGTATTATCAAATGTAGCAGAAGCAAGGTGGGATTTTAGGGCAAAGATGGGGTTCAGTAAA TTTGGAGTATATTTTCCCAGTTACTTCTCACAGCCTCTTATTTTGGCACAACTCAACCGAAAGTTGCATTCGCTTTGCAC CTTACATTCCATGCTCTTCCTGAATCAGTTACACCATGCTCTTCTGGATGACAGAGTTAATAAACTCTATCTCTTATGAG CAAGCTCTTGCCAGAGCGACTGTGAGTGGATCTTTTATCTTTTATTTACTTATATTTTCCATTTTGGGGAGTGGCAGTGG GAAGCTGAGCTCAACTACTTTAACAGAATGTGTTCCAAATCTTACTAGTTGTTACTTGATCTGTTTCAGGTGGCTGGAAG AAAGAGTATTCATGATTTTGCACCATTAACAGTGGTATCAGAGCATAAGCTAATTATCATGTGATTCTCTGAATATGACA TCCACAATCACATGGATTCTTTCATACCTGGTAGCAATCTTATTGCTAGTTTACTCACTTAGCTTTTTTCCAGTACTTAA TTCAGTTCTGAGATGTTATTTTTCATTCTAAAATATTAAAATTTTGGATCATGGATGGATTTGGATTTTAATAGTATCCA ACTTTATGGCCTGAATGATTTAGTGTATGAGGCTTTGGTTGAGCAGAAACTCTTCACCTAGAAATAATTTCTTGGAATGT TTCATCATGGCCTTCTGACTTAATTTTGCTTCCCTGTAACCGTGCTCTTCTTGCAGTTGCTGAATTTCTTAAATTTTGTC CATGCTAATATGAAGGCAATGAAGCAATGCTAGAGCGTCCCACCACATATTATTTCAAATACTATATGTTGTATTCTATT CATTGTGATGTTTTGCTTCTGCTATGTTGCAGGTAGTAAGAAATAATCGTTCACTTTGGAATTGTTAATCACTTGTTAAT TTTCTCTCTGAAAATTTTACTCTAATGCTAATCTCTCTCAATGCATTTATTGTTATTGGGAAAATGAAAAGAAAACTTGA AGGGTTGTGAAACAAAGGAACAGGTGAAGCAGTAAAGGTGGACCCTCAGATGGAGTGTAAGTGATTCTTGAAACAATTGC TGGAGGAGCCAGAAAGGAAACTAACCATCTAAAAATCTCATGCCTGTGTACTTGTTCTGCAGCTAAATTAGATCAGAACA CTACGTATTTTTGGGAAATTGTTTATCTTCATCTTACATGATTTATGTACGAGTGTTCAAAGTTTTTACACACAAGCAAT ACCTGTTTGAGTTTGGATCTACTCACAGGTCTATGACTGATTCATTTGTTTAGTTTGTTTGACTGATGTATCCATGTGAT TTGCTAAAGAAAATTGCTAAAATGGCATAAATCCTCAACTACTTTCATAAAATTAAGGAGGGACCAGACAATATTATCTA ATACTGCGCTTTTCCATTCCATTCAACTACTCTAACCTGCTCATTAGTCATCACCCAACCCCTATTGGTTATTCTCTCTT TTTGCAGATGTGATCTT
CDS sequence (LotjaGi3g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCACCCTTCTGTTTTGACATTTCACTTTCAGAATCTTTTTAGATTTCGCCACAAACTATGTGACTCCAAAGCAGT GGCTCAACTTATCCAAACCTGTGCACAAGCCAAAGAATTGAGCAAAGGAAAACAGTTACATGCTCAGCTGATCCGAGGAG GGTGTTTACCATGCACCTTTCTGACAAATCACCTCCTCAATTTGTACTCCAAATGTGGAGAGCTTGATTATGCTATCAAG CTGTTTGACAGAATGTCTAAGAGAAACATGGTCTCTTGGACAGCTATGATTACTGGGTTTTTTCGTAGTTTGAGGTTTCG GGAGGCTTTGGATACCTTTTGTCAAATGAGGGCTGAAGGAGAGACAGCCTCGCAATTTGCACTTTCTAGTGTGCTTCAAG CTTGCGCCTCTCTAGGGTCAATTCAGTTTGGGGTACAGGTGCATTGTCTCGTTGTGAAAAGTGGGTTTGGCTGTGAACTG TTTCTGGGTAGTAATCTGACTGATATGTATTCGAAGTGTGGGGAGGTGTCTGATGCTTGTAAAGTTTTTGAAGAAATGCC TTGTAAGGATGAGGTGTTGTGGACCTCAATGATTGATGGCTACGTGAAAAATGGAAATTTTGAGAAAGCTTTAATAGCTT ATAAGAAAATGGTCACTGATAATGTCTTTATTGATCAGCATGTATTATGTAGTACTTTGAGTGCTTGCACTGCACTTAAG GCTTTTAGTTTTGGGAAGTCCCTGCATGCAATTATTGTGAAGTTTGGATTTGAATATGAGACTTTCATAGGAAATGCCTT AACAGATCTGTATTCAAAGTCTGGGGATATGGTAAGTGCTTCAAATGTCTTCCAAAGTGATTCTGGTTGTAGAAACATAG TGTCTTTTACTGCTATAGTTGATGGTTATGTTGAGATGGATCAACTTGAGAAGGCTTTAAATGCTTTTATTGACTTGCGA AATTCGGGAATTGAACCTAATGAGTTCACTTTCTCTAGCTTGATCAAGGCTTGTGCTAACCAAGCAAAACTAGAACATGG GAGCCTGCTCCATGGCCAAGTTGTCAAATTCAACTTTGACAGAGACCCTTTTGTTTCTTCTGCCCTAGTTGATATGTATG GAAAGTGCGGGTTATTTGACCACTCAATCCAATTGTTTGATGAGATTGAAAATCCAAATGATACAGCCTGGAATACATTG GTAGGAGTTTTTGCACAGCATGGTTTAGGAAGAAATGCCATTGAAACTTTTAATGAGATGGTCGACAGAGGGCTGAAACC AAATGCAGTAACATTTGTGAACCTTTTAAAAGGATGTAGTCATGCAGGAATGGTTGAGGATGGGCTAAACTACTTTTATT CTATGGACAAGATTTATGGGGTAATGCCTAGAGAAGAACATTACAATTGTATTATTGATTTGCTTGGTAGAGCTGGGAAG CTTAAAGAAGTAGAAGATTTTATAAATAGCATGCCTTTTGAACCAACTGCTTTTGGCTGGTGTTCTTTTCTTGGGGCTTG TAAAACCCATGGTGATAAGGAAAGGGCCAAACTTGCAGCATACAAATTGATGAAGCTTGAACCTGAAAATAGCGGGGCTC ATGTTTTGCTTTCAAATATTTATGCAAAAGAAAGACAATGGGAAGATGTAAGATGTTTGAGGAAAATGATAAGAGATGGC AACATGAAGAAATTGCCAGGTTACAGCTGGGTTGATATTGGAAATGAAACTCATGTATTTGGGGTTGAAGATTGGTCTCA TCCTCGAAAGAAAGAAATTTATGAAAAGCTTGATAGTCTTCTTGATCAGATAAAGATTGTTGGCTATGTTCCTCAAACAG AATCAGTTCTGATTGAAATGGATGACACTTTGAAGGAGAAGCTTCTTCATAATCACAGTGAAAGGATTGCTGTGGCTTAC TCATTACTAGTCAGCCCCATTGGGAAGCCAATCATTGTCAAGAAAAATTTAAGAGTTTGCTCTGATTGCCATTCTGCGTT CAAATATATTTCTAAGGTCACTGAGAGAAATATCATTGTCAGAGATATCAGCAGGTTTCATCATTTTTCCAATGGTTCTT GCTCCTGTGGAGATTACTGGTAA
Protein sequence (LotjaGi3g1v0219200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIHPSVLTFHFQNLFRFRHKLCDSKAVAQLIQTCAQAKELSKGKQLHAQLIRGGCLPCTFLTNHLLNLYSKCGELDYAIK LFDRMSKRNMVSWTAMITGFFRSLRFREALDTFCQMRAEGETASQFALSSVLQACASLGSIQFGVQVHCLVVKSGFGCEL FLGSNLTDMYSKCGEVSDACKVFEEMPCKDEVLWTSMIDGYVKNGNFEKALIAYKKMVTDNVFIDQHVLCSTLSACTALK AFSFGKSLHAIIVKFGFEYETFIGNALTDLYSKSGDMVSASNVFQSDSGCRNIVSFTAIVDGYVEMDQLEKALNAFIDLR NSGIEPNEFTFSSLIKACANQAKLEHGSLLHGQVVKFNFDRDPFVSSALVDMYGKCGLFDHSIQLFDEIENPNDTAWNTL VGVFAQHGLGRNAIETFNEMVDRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFYSMDKIYGVMPREEHYNCIIDLLGRAGK LKEVEDFINSMPFEPTAFGWCSFLGACKTHGDKERAKLAAYKLMKLEPENSGAHVLLSNIYAKERQWEDVRCLRKMIRDG NMKKLPGYSWVDIGNETHVFGVEDWSHPRKKEIYEKLDSLLDQIKIVGYVPQTESVLIEMDDTLKEKLLHNHSERIAVAY SLLVSPIGKPIIVKKNLRVCSDCHSAFKYISKVTERNIIVRDISRFHHFSNGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 141 | 129 | 1.7E-23 | ||
| PANTHER | 14 | 145 | 132 | 1.9E-106 | – | |
| ProSiteProfiles | 23 | 57 | 35 | 8.089 | ||
| ProSiteProfiles | 58 | 88 | 31 | 8.188 | ||
| Pfam | 63 | 89 | 27 | 2.5E-4 | ||
| TIGRFAM | 63 | 91 | 29 | 6.8E-4 | ||
| ProSiteProfiles | 89 | 123 | 35 | 9.788 | ||
| TIGRFAM | 91 | 120 | 30 | 3.2E-5 | ||
| Pfam | 91 | 120 | 30 | 2.0E-5 | ||
| ProSiteProfiles | 124 | 158 | 35 | 6.029 | ||
| PANTHER | 128 | 237 | 110 | 1.9E-106 | – | |
| Gene3D | 142 | 243 | 102 | 1.6E-15 | ||
| ProSiteProfiles | 159 | 189 | 31 | 6.752 | ||
| Pfam | 166 | 188 | 23 | 0.018 | ||
| ProSiteProfiles | 190 | 224 | 35 | 10.633 | ||
| Pfam | 192 | 221 | 30 | 1.6E-7 | ||
| TIGRFAM | 192 | 225 | 34 | 2.3E-6 | ||
| PANTHER | 228 | 347 | 120 | 1.9E-106 | – | |
| Gene3D | 244 | 352 | 109 | 3.3E-17 | ||
| ProSiteProfiles | 292 | 326 | 35 | 10.337 | ||
| Pfam | 292 | 340 | 49 | 9.2E-12 | ||
| TIGRFAM | 294 | 328 | 35 | 1.7E-4 | ||
| ProSiteProfiles | 327 | 361 | 35 | 7.465 | ||
| PANTHER | 346 | 562 | 217 | 1.9E-106 | – | |
| Gene3D | 353 | 457 | 105 | 8.1E-22 | ||
| ProSiteProfiles | 362 | 392 | 31 | 7.662 | ||
| Pfam | 367 | 390 | 24 | 0.061 | ||
| Pfam | 392 | 440 | 49 | 2.2E-11 | ||
| ProSiteProfiles | 393 | 427 | 35 | 11.071 | ||
| TIGRFAM | 396 | 429 | 34 | 1.1E-5 | ||
| ProSiteProfiles | 428 | 463 | 36 | 7.794 | ||
| ProSiteProfiles | 464 | 494 | 31 | 7.114 | ||
| Pfam | 467 | 491 | 25 | 0.0068 | ||
| TIGRFAM | 468 | 491 | 24 | 0.0025 | ||
| ProSiteProfiles | 530 | 564 | 35 | 5.612 | ||
| Pfam | 566 | 689 | 124 | 3.0E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0219200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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