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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0224900 |
| Transcript ID | LotjaGi3g1v0224900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT2G37630.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|O80931|AS1_ARATH Transcription factor AS1; TrEMBL-Plants: tr|Q4VPF4|Q4VPF4_LOTJA Phantastica transcription factor a; Found in the gene: LotjaGi3g1v0224900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34599743..34602603) extracted from Lotus japonicus Gifu genome v1.2.
AATTGAAGCGCTGAAACCAACGTACGACACTGCTGCATTAATGCTTTTTCCACTTTTTATCTCTCTCTTCACCTTGTGAC TCTGTGGGGTCTCTTCTCTCCCGTCTTGTCCAATTCCAACTCACTCTCTCTCTCACAGTGTCCTGTCTTCACTCTACGAC CCTGCGGGTATATTTTCTCTCTCTCTCTCTAGGATAATGGCAACGATGCTTCTCGCTTTTCCCTTCTTTCTCCTCCTCGT TTCTATAACCCAAAATTGTTCTCTTTCACGGACCCTGATATTATGCCTCGGAGAACTAGAAGCGAGCTGCTAGGGAGTTA GGGAGCAAGTGTGACCATTCCCACATCATCATCATCTTCTTCTTCTGTTTTGACCATCTGGGTCGGCTTCAGTTTTTGTA TTGTGTTTAGAACCAAGGTTGGGAACTATATGGTGCCATGTTGCTGCAGAAAATAGTGATTTTTTTTCGTCTGGTTTGAA GTTTGTAGGATGGTGAGTCTTTAAGTAATGGCTTTTTTTGTTTTGCTCTGTATTGATGAAGTCCATGTTTTCTTTGGTTT TGTTCTTTGATGTTTTATATCAGTTCCTTAGATCATGTGAATTTGCTAGTGAAGAAAAATCCTACAAAGTCTCTCATTTG TTCTACCTTTTTAGATTTCTGTTCACGTACCATTTGCTCTGGATACTATGGATAACATTTTTTACTCTGTTTTCAATTTG GTAGAGTTGGTTCTTTCTAGTGTAATGTTAATCTGAGACACAAGTTTGAAATTAGTGATTAAATGTGTTACTGTTGAAAT TTCCTTGGGCCCTTTAAACCAATGTTTTAGTGCTTCTTATTCATGTTCTTAGTTAATCAGGTAGAATAGAAGAACTTACA TAACTGATCTGGGATATCTTGTTTCAATAGAGGCTCTTACTAGCTTTGAAATGCTTGTAATACCCTGAAATTACTATATT CAAACCCTGAAATGCCTCAACAATAAAGTAAGGCTAGAAATTCTCAAATAATATAATTGGAATTGTGATGTAAACACTTG CTCTGTCTGGATTTATGTTGGATTTGCCTCATCCAACTATGTATTCCGTTGGTTGAATGTACATTGAAAACTGTGATCCT AATTTACGAGGTACCGAATGTTTTTTGAACTGAAAATCCAAAAGGGTTTTGGTGGGTTTTGCTGCTACAATGCTGCTATG TCTTTCCATGATTTTCATTTGGTAGATCTTGTATCTGTTTTCATAGATATGATGTGTTGATATTATTCTGTGTTAACGGC CTTACTATCATGTATATTTTTGCTTGATTGAAATCCTGAATGAGATTGAGGTAAATCTTATCCTTGTTTAATAGGAATTA AGTGATTTCCTTAATTGTCATGAACTTTTGTAGATACATGATGAAGAGTTCAAATCTCAAGAAATGTTCTGTTGGATTTG CTCTTGGAAATGAAGGAGAGGCAACGTTGGACATCTGAGGAGGATGCTCTATTATGTGCTTATGTCAAACAGTATGGTCC TAGAGAATGGCATCTCGTGTCTCAGCGCATGAACACGACTCTTCACAGGGATGCAAAGTCGTGTTTAGAAAGGTGGAAGA ACTACCTGAAGCCCGGAATCAAGAAAGGATCTCTCACGGAGGAAGAGCAGCGCCTTGTCATCCGCCTTCAAGCAAAACAC GGCAATAAGTGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGAACCGCTAAGAGGCTAGGCAAGTGGTGGGAAGTTTTCAA AGAGAAACAGCAGAGAGAAAAACAGGAGATTAGCAAGTCAATCGGCCCGGTTGATGACAGCAAATACGATCACATTCTCG AGACTTTCGCGGAGAAGCTAGTGAAAGAGCATCCTTCACCATCATATCTCATGGCTGCTTCTAATGGACCCTTTCTCCAC ACTGACACACCTGCTGCCACCCCTGCATCAGCTTTGCTCCCTCCTTGGCTTTCAAATTCGAGCAACAATCCAGCCACAGC TGGGCAGCCACCTTCCCCTTCCGTGACATTAAGCCTCTCCCCCTCGACAGTGGCAGGACCACCACCTCCATGGAGAGGAC TGGAGAATAATGCTCTTGCTATGGCGAACACAGCGCCCCACGGAACTGTTCCTGCTTTCAGCGATAACATGCTGGTATCT GAGTTAGTGGACTGCTGTAAGGAGTTGGAAGAAGTGCACGGCGCGTTGGCCGCACATAAGAAGGAGGCGACCTGGAGGCT GAGAAGGGTGGAGCTGCAGTTGGAGTCAGAGAAGGCGAATAGAAGGAGGGAGAAGATTGAAGAAACGGAAGCTAAGATTA AAGCTCTCAGGGAACAACAGAATGCTGCTTTGGAAAGAATTGAAGCAGAGTATAGAGAACAGTTAGCTGGATTGAGGAGA GATGCAGAAACCAAAGAACAAAAGCTGGCTGAGCAATGGACTGTAAAGCACTCGCGCCTTATGAAGTTTATGGAGCAGAT AGGATGCAGATCCCGGATTGCAGAGACTAATGGAAGATGAAGACATCACTCAGAATCGATATCTGGTTGGGGTGCTGTTC TGGCTTGAATCATATATGCAGTCACTCACATATTAAGTTTTGATCTTGTGCCTAACCTCCAGTTTTACAAATGTCTGTTA TTGCAACTTGAGGAATTTGTATTAGAATTAGTTGATGAGTTGCATCCATCTTTATGAATATGAACTGAGTTATAAGTTTA TGTAGCTTATTTCTGTCTTATGTTCCATTTCCATTGGGATCTCGAATGACATTTGTACAAACTGCAAAGGGATGTTGTTA GCCCGGACTTTTAGTTTGGAAGTGTTCTTATGATTAAAATAAAGGTCCATTCATATTGCAT
CDS sequence (LotjaGi3g1v0224900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAGAGGCAACGTTGGACATCTGAGGAGGATGCTCTATTATGTGCTTATGTCAAACAGTATGGTCCTAGAGAATG GCATCTCGTGTCTCAGCGCATGAACACGACTCTTCACAGGGATGCAAAGTCGTGTTTAGAAAGGTGGAAGAACTACCTGA AGCCCGGAATCAAGAAAGGATCTCTCACGGAGGAAGAGCAGCGCCTTGTCATCCGCCTTCAAGCAAAACACGGCAATAAG TGGAAGAAAATTGCTGCAGAAGTCCCAGGTCGAACCGCTAAGAGGCTAGGCAAGTGGTGGGAAGTTTTCAAAGAGAAACA GCAGAGAGAAAAACAGGAGATTAGCAAGTCAATCGGCCCGGTTGATGACAGCAAATACGATCACATTCTCGAGACTTTCG CGGAGAAGCTAGTGAAAGAGCATCCTTCACCATCATATCTCATGGCTGCTTCTAATGGACCCTTTCTCCACACTGACACA CCTGCTGCCACCCCTGCATCAGCTTTGCTCCCTCCTTGGCTTTCAAATTCGAGCAACAATCCAGCCACAGCTGGGCAGCC ACCTTCCCCTTCCGTGACATTAAGCCTCTCCCCCTCGACAGTGGCAGGACCACCACCTCCATGGAGAGGACTGGAGAATA ATGCTCTTGCTATGGCGAACACAGCGCCCCACGGAACTGTTCCTGCTTTCAGCGATAACATGCTGGTATCTGAGTTAGTG GACTGCTGTAAGGAGTTGGAAGAAGTGCACGGCGCGTTGGCCGCACATAAGAAGGAGGCGACCTGGAGGCTGAGAAGGGT GGAGCTGCAGTTGGAGTCAGAGAAGGCGAATAGAAGGAGGGAGAAGATTGAAGAAACGGAAGCTAAGATTAAAGCTCTCA GGGAACAACAGAATGCTGCTTTGGAAAGAATTGAAGCAGAGTATAGAGAACAGTTAGCTGGATTGAGGAGAGATGCAGAA ACCAAAGAACAAAAGCTGGCTGAGCAATGGACTGTAAAGCACTCGCGCCTTATGAAGTTTATGGAGCAGATAGGATGCAG ATCCCGGATTGCAGAGACTAATGGAAGATGA
Protein sequence (LotjaGi3g1v0224900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERQRWTSEEDALLCAYVKQYGPREWHLVSQRMNTTLHRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNK WKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEISKSIGPVDDSKYDHILETFAEKLVKEHPSPSYLMAASNGPFLHTDT PAATPASALLPPWLSNSSNNPATAGQPPSPSVTLSLSPSTVAGPPPPWRGLENNALAMANTAPHGTVPAFSDNMLVSELV DCCKELEEVHGALAAHKKEATWRLRRVELQLESEKANRRREKIEETEAKIKALREQQNAALERIEAEYREQLAGLRRDAE TKEQKLAEQWTVKHSRLMKFMEQIGCRSRIAETNGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 356 | 356 | 2.7E-170 | ||
| ProSiteProfiles | 1 | 57 | 57 | 23.679 | ||
| PANTHER | 1 | 356 | 356 | 2.7E-170 | – | |
| SMART | 3 | 55 | 53 | 9.9E-14 | ||
| Gene3D | 3 | 59 | 57 | 2.6E-17 | – | |
| SUPERFAMILY | 4 | 98 | 95 | 2.01E-22 | ||
| CDD | 6 | 53 | 48 | 1.17957E-9 | ||
| Pfam | 7 | 67 | 61 | 2.0E-14 | – | |
| ProSiteProfiles | 58 | 108 | 51 | 19.081 | ||
| SMART | 58 | 106 | 49 | 2.8E-10 | ||
| Gene3D | 62 | 122 | 61 | 5.2E-12 | – | |
| CDD | 63 | 104 | 42 | 5.51561E-8 | ||
| MobiDBLite | 167 | 205 | 39 | - | – | |
| MobiDBLite | 170 | 199 | 30 | - | – | |
| Coils | 257 | 325 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Leaf formation | The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts. |
Expression pattern of LotjaGi3g1v0224900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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