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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0225000 |
| Transcript ID | LotjaGi3g1v0225000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT2G37630.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|O80931|AS1_ARATH Transcription factor AS1; TrEMBL-Plants: tr|Q4VPF3|Q4VPF3_LOTJA Phantastica transcription factor b; Found in the gene: LotjaGi3g1v0225000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34605219..34608360) extracted from Lotus japonicus Gifu genome v1.2.
CCCTCTATCACTACCATGTCATATCCCATCATGATGCCACCATTCTCATCGCATGGGCACTGGTGCTTTTCCCATTTCTT TCTTATATGTCCTTTTGTTATTTATTTTTTTCCTTTTCTGATAACTGTCCAAACTGTGCCATTTCTTGGACCAGAAGATG CTGTTCACCCCCTGTGAGTATTCTCACTTCATCTTCATTGGGTTTTAGCATCTGGGTATGTTCCATTTTTTGCATTCTCT CAATAACCCATCCAGGGTTAAGGGTTGCTAGCTTCTTAAAAAAAGTATTAATTTTTAATCAAAACCAGTTTTTGCTGGTG GAAAAAGTTCAGCCAAGTTTCTCCTCATTTCTGTTCAATTCTGTATTTATTTTACTTGATCTGTTTTGATTCTTTGTGAA TTTTGTTGCACTATTACTTTAAATTGTGTTCTAAGAGATTTGGAAGTTGCTACATAATTCTGGAGTTGGGACACAGTTTA ATAACTTTTCTCAAATCACTTCTAAGCATCAAGACCTATTGAATTTTCAAACCCACACTTCAATTAACACGGAAAAGTCA TTTAATTTATTGTCATCGAGTTAGGATTCGTTTATATTTCACTTTCTCTTCCATCTTATTTTTACAATTTTTTTTTCTAT TACTCTCTGAATGTATTTCCTGTCACATCACATGTCTTATCTTCATTTTTCACATTTTCTTCATATTTTAATGAGATGGA GGTGTTTATGAAGGGTGTATAAAACCTTATTTATTGTTTTTTATGAGGTGGAGGAGGAGGTCACATTAGTTAATAGCATC AACATGTTGGAGAATAAACTGTGTGTTCCCATTTCATGTTTCTTTTCACTTTTTATCTCAATGGTATTGGTGCCAACATC CCAAGATAACTTCTATTGCCTCACTATTTAATTTAGAGTTACCATCATTTTTCTTTAAAATTATGTCATATCCATGTATA CACGTGTCATTGCTGTGACTTGTGGATGGATACTGTGCTTTTTGCTCTGCATAGACTCTGAATACCTCTTTTGCTATGCC TTTTTTAGCTAACATTACTGAAAGTCTGAAACTGATCCTTGCTTGTCCCCATACTTATTTGAAACAGGAATATATGATTA TTGATGAAGAAGATGTGTCAAATCACTACTAAGTCCTTAGGCCTTTCAACTACTGGTATGCTTTTAATTCATGCTTATTT ACCATATTGCTTGAAGAATGTATACGGATGGAATTCAGAATTCCCTGCTTCTATTGAGAGTCATAATTTTGATGTTTCCT GTAATCCAAAGGAACTTATTTGTATTGAGAACTTCTTTATTCATATTAAGACATGTTTGGTAAGAAGTTAAATTCAATTT TAGAAGGACTATAGGCTATTATTGAACTAACCAAATGAGCTTTAGGTGAGTGTTTATCAAACATCTGCCTTGGCGGAATC TAATGGTAGATTTCTGGCTCTTTGTCATTGTTGATATCCCGCCACAAGTCCACCATCATTATTTGTCAAATATGGCGGGA TTTTGGCTCTCCGTCATAGTCCGTATTCTGCCATTAATACCACTGCTTCCACTCCCATATTATGAATTTTATAGGAGCAG CTCAACTTATTTGTATTTTGATTTCATTTGTTGACATATAATTGAACATTTTTTAAAATCCATATGTTTCGCTTTTAATT TTTAAATGTTCAGTATGTATTTAAATATCAATTGAGTGCAAAATAAATTGACTTTTATTTCGATTCATAAGAAGAGTTCA TTCACGTGTTAACATTTATTTACACCGGTGGATCTAGTATCCAAACTGACATACTTGTTTCTCCTCTTCTTGTTGTGAAT TGATGTCTTGAGTTGTAATAACTTTTCACAGAAATATGATTAGTTCAAGATGCAAGAAATGGGCTGTGGAATTTGCTCTT GGAAATGAAGGAGAGGCAACGTTGGTCATCTGAGGAGGATGCTTTACTACATGCTTATGTCCAACAATATGGTCCTAGGG AATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATACAAAGTCATGCTTAGAAAGGTGGAAGAACTAC CTCAAGCCTGGCATTAAAAAGGGATCTCTTACCAAAGAAGAGCAGCGTCTTGTGATCCTCCTTCAAGCAAATTACGGAAA CAAATGGAAGAAGATCGCCGCTGAAGTCCCCGGTCGCACGGCGAAGCGATTAGGGAAGTGGTGGGAAGTCTACAAAGAGA AGCAGCAGAGAGAAAAAATTGAGATCAATGGGATAGTTAGCCCAATTAGTGATACCAAGTATGAACATATGCTAGAGGGT TTTGCTGAGAAACTAGTGAAAGAGCACACTTTACCATCATTTGCTATGGCTGCATCATCCAATGAGGCATTTCTGCATAC CAATTCATCAGCTATGCTTCCTTCTTGGCTTTCCAATTATGATTCAACTTCAACACCTCCAAGTTCTATTTCCGTGACGT TGAGCCTTTCTCCCTCAACAGTGGCAACACCTAGAGGACTAGAGAACAATGCTCCTTTTGTTTTGAGGAATGTAACAGCA CACAATGGATCTGTTCCTTCTTTCAGTGATCACATTCTCATGTCAGAATTGGTGGGATTCTCCAAAGAGTTGGAAGAGGG GCACCGCGCTTTGGCGGCACATAAGAAGGAGGCAGAGTGGAGACTAAGAAGGTTGGAGTTGCAGTTGGAGTCGGAGAAGG CGTGTCGAAGAAGGGAGACCGTGGAAGAGTTTGAGGCGAATATTAAAGCTCTTCAAGAAGAGCAGACAGCTGCTTTGAAT AGAATTGAAAATGCATGCAGGGAACAGTTAGGTGGATTGAGGAGAGATGCTGAGAGCAAGGAGCAAAAATTGGCAGAGAA ATGGACTTCAAAGCATTTGAGGCTTACTAGGTTATTAGAGCAAATGAAAATCCAGACCGGGGCTCCTTGAGCCAAATGCA AGATGAAGATATGATCAGCAAATTGGATATAGGTGCTCTTATGACTTGAATTATATGCACTTTATGTTCCTTGTTGTGAT CCTGATATATTTATTCACAGATTTGTGCAAATTTCCTATCTATTCATACAAGTTTGAGTATTTCTGTTAGCAGTTTGAAT GTGGGAGGATGAACTTATCCCC
CDS sequence (LotjaGi3g1v0225000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAGAGGCAACGTTGGTCATCTGAGGAGGATGCTTTACTACATGCTTATGTCCAACAATATGGTCCTAGGGAATG GAATCTCGTGTCTCAGCGCATGAACACACCTCTCAATAGGGATACAAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCA AGCCTGGCATTAAAAAGGGATCTCTTACCAAAGAAGAGCAGCGTCTTGTGATCCTCCTTCAAGCAAATTACGGAAACAAA TGGAAGAAGATCGCCGCTGAAGTCCCCGGTCGCACGGCGAAGCGATTAGGGAAGTGGTGGGAAGTCTACAAAGAGAAGCA GCAGAGAGAAAAAATTGAGATCAATGGGATAGTTAGCCCAATTAGTGATACCAAGTATGAACATATGCTAGAGGGTTTTG CTGAGAAACTAGTGAAAGAGCACACTTTACCATCATTTGCTATGGCTGCATCATCCAATGAGGCATTTCTGCATACCAAT TCATCAGCTATGCTTCCTTCTTGGCTTTCCAATTATGATTCAACTTCAACACCTCCAAGTTCTATTTCCGTGACGTTGAG CCTTTCTCCCTCAACAGTGGCAACACCTAGAGGACTAGAGAACAATGCTCCTTTTGTTTTGAGGAATGTAACAGCACACA ATGGATCTGTTCCTTCTTTCAGTGATCACATTCTCATGTCAGAATTGGTGGGATTCTCCAAAGAGTTGGAAGAGGGGCAC CGCGCTTTGGCGGCACATAAGAAGGAGGCAGAGTGGAGACTAAGAAGGTTGGAGTTGCAGTTGGAGTCGGAGAAGGCGTG TCGAAGAAGGGAGACCGTGGAAGAGTTTGAGGCGAATATTAAAGCTCTTCAAGAAGAGCAGACAGCTGCTTTGAATAGAA TTGAAAATGCATGCAGGGAACAGTTAGGTGGATTGAGGAGAGATGCTGAGAGCAAGGAGCAAAAATTGGCAGAGAAATGG ACTTCAAAGCATTTGAGGCTTACTAGGTTATTAGAGCAAATGAAAATCCAGACCGGGGCTCCTTGA
Protein sequence (LotjaGi3g1v0225000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKERQRWSSEEDALLHAYVQQYGPREWNLVSQRMNTPLNRDTKSCLERWKNYLKPGIKKGSLTKEEQRLVILLQANYGNK WKKIAAEVPGRTAKRLGKWWEVYKEKQQREKIEINGIVSPISDTKYEHMLEGFAEKLVKEHTLPSFAMAASSNEAFLHTN SSAMLPSWLSNYDSTSTPPSSISVTLSLSPSTVATPRGLENNAPFVLRNVTAHNGSVPSFSDHILMSELVGFSKELEEGH RALAAHKKEAEWRLRRLELQLESEKACRRRETVEEFEANIKALQEEQTAALNRIENACREQLGGLRRDAESKEQKLAEKW TSKHLRLTRLLEQMKIQTGAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 337 | 337 | 3.1E-150 | ||
| PANTHER | 1 | 337 | 337 | 3.1E-150 | – | |
| ProSiteProfiles | 1 | 53 | 53 | 14.805 | ||
| SMART | 3 | 55 | 53 | 8.0E-13 | ||
| Gene3D | 4 | 59 | 56 | 4.1E-17 | – | |
| SUPERFAMILY | 4 | 98 | 95 | 4.4E-21 | ||
| CDD | 6 | 53 | 48 | 2.29009E-8 | ||
| Pfam | 7 | 68 | 62 | 2.5E-14 | – | |
| ProSiteProfiles | 54 | 108 | 55 | 21.503 | ||
| SMART | 58 | 106 | 49 | 6.1E-9 | ||
| Gene3D | 62 | 128 | 67 | 5.0E-11 | – | |
| CDD | 63 | 104 | 42 | 4.41831E-6 | ||
| Coils | 240 | 267 | 28 | - | – | |
| Coils | 273 | 300 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Leaf formation | The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts. |
Expression pattern of LotjaGi3g1v0225000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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