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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0228600 |
| Transcript ID | LotjaGi3g1v0228600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT5G06100.1 myb domain protein 33; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A0L9UMU6|A0A0L9UMU6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0228600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35581559..35584831) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCACTCTCTTGTCTTTGTCTCTCCTCTATTTTTCCTCTGTTCTAGTTATCTTGTGTGAGAGGAGAGATAATCTTTGA AGTCCATCCCTGACTCAACTCTTCACACATTCTCATACCTTAAACATCCCCTCCATCACATAAGCACCAACTGAAGAAAA AAATGTAGCTTTCTTCTCCTTCTATTGTTCTTCTTTTTTTATATAAGTTCTTTTGTTCTTGATCTGTTTTTTTTTCATAT AAGAGTTTTTTTGTCTCACCTTTTGTCTCAGATATTGATTGTTATGGCGGAAAACAACTCCAATTACAACAACAACACCA ATAAATCTGACCTGAGGAAAGGTCCTTGGAGTATAGAAGAAGACATGATGCTGATCGCGTATGTGGAGAGAAATGGTGAG AATTGGAATGCTGTGAAGAATAATTCTGGGTTGCTCAGGTGTGGCCCAAGTTGCAGGCGTAGGTGGGTGAATCATCTAAA GCCTGGTCTCAAGAAGGGTGCAATTTCTGCTGAAGAACAAAGAACCATCGTGGAACTTCATGCAATGTTTGGGAACAAAT GGGCCAAAATAGCTACTCAGGTATATCTATCTCCTTTGACAAGCTATGACTATTTGCTTGTTGTATACATGCTTGCAGAA AATTATTTTATAAATGTATGTAAAGTTTTGATCTTTGTGGCCTGTGTTCATGTGATCAATATTTTCGCTTCTGTCTGTTT TCTTGTTCTTGGTTTTTAGTGTCATTTTGGTTTCTCTGTTTTCTCTGTTCTTGGTTTTAGTGCAATATTTTGATTTCGAA AGTGAAAAAGGATGGTATGATCTCTGATTTAATTTTGTTGTCTTCATTGTTGTTGTTCATCTTTGACCATGATCATATTT TAATTTCAAGATTTGGATAATGGAAACAGATTTAATTAGATCTGCAACAATTTGTTTTGATTAGTGACAGAGTCGAGAAG AGAGAAGGAAAAGCCATTTTTCTGTTCAAACTTTATGTGCTTGTTTATTTCTATTTATTTTTCGAAAATTTTCATCCAAA TTCATTCCGGTGCATGATGATTTTTATGGCAAAGATTCAAGATAGTTTTTATCATAATAAAATAAACAAAAAGGTTTGAA CTTGAATTGAGTTTCTTTTTGCGGTTCCATTGCTGCACTAGGACCAGTGAATCTGTTTCCTATGCGGTTTCATTTTGTGG TTTTTGTAGTTCTAGTGTTGTCCATGTATGTGTTCTGATTTTCGTTGAACTCAACATGGATCTATGTCGACCTCAAGGTG ACAAATTATAGTTTCTCCACTAAAACCTTGAGATATGTGAAATCACCTTTGCGTTTGCATGAACGTTAAACCTGATTTCA TGTATCTCGAAGTATCAACGGATAAGCTAGAATTTTTACACGTGGGTTGGAGAAACAAAATTTTACCATATCACATTCAA CGTAAATCCATGTCAAGTTCAGCGGAAATCCAAATAGACATCCGGATTTTCTTACATCTCAATTTGGGATAATCACTATT GACATATGCATCCTCACATCAGTCACTTTGAAAACTATACTTTCATTTTGGCCCACTTTCACATAATTTTATGCCATTTT GTCATGCTTCCATTTGCTGATTTCATATGTTCTTTTTGTATTGTACACTTTTCAGCTACCTGGCAGGACTGACAATGAGA TCAAGAACTTTTGGCATAGCAGGGTGAAAAAGCGCGAGAAAGCAGGGTTACCCCTTTATCCCCCAGAAGTTCTTGCAAGA GCAGAAGCTTATCATCAGCCACAAAAGGAGAAGCAACTTCAACATATATTGTCTTCATCGTTTTCTGCAGGTGCTGATTA CCCCAACAACCCTGGTGTGCTTCTGCCAAATCAACCAACTTTTGGAAATCCTCTGGCAAACCACCTTGATCCTGCTGCAA ATTACTACACCAGTTCATACCCCCCGCTGCCGCTCTCACCGCTGCCGCAGTTTGAGTTTTTCAATAAGAATGGTGGTGAC AGAAACATTGCTCTGCCTCTGTCCCCTGTTTCTGCATATGTAACAGGCTCGGCCTCTGAGATATCTGCGACCATAACTAC CGCAGCTGCTGGCTCTGTTACCCCTGTTTCATCCCTTGCTAGTGAATTTGAAGGTTGGCTTGAAGCTACAAGCAACATGG CCAATGACTATCATGAAGATGTTGCACCGTTTCCATATCCTCCTCTTCCAGGAAACACTGGCTTGTTGGGTGATATGGTG CTTGATGCTGAGAGTCTATCTCTCAATAACAAGGGGAAGAACATAATGGCTGATCAGGATGATGCTGCGGAAGGAAGCAG CAACACTGTGAAGGAGAACAATGCTGAAGCTACTAATGAGAACCAGAGCAATGAACTTGGTAATTTTCAAATTTTAATTT TATGTTTCATGAATTTTGTGAAATATCTTGTGTGCAGCAGCAGCGACGGCAACCGCAATTTAAAACTCTTGTTTTTAATT TGTAGGTGAAAATCAAATTGGAGTTCATGTGGAGGAGATGAATGATTATGATGACCTCTATAGCCAAATCGACTTTTCAG AATTGTCATGGACTTTTGGAGATTTCGGGAGCGGCAGTGACGTGTCTGATATATGCTAATTGTAGCATAGAGACAACAAG AGAACTCAGTTCTTATATAAGGAGTTTTACTTTTGAGTTCTTAGCATAAAAAATATTTTTTTCTCTCTCATCCAAATTTA TTTATTACTCTATGAGTTTTATTTTATTGTTTTATGAAAATAAAAAGTATAAATAATATGGTTTGTGTGACCAAATGAAT AGTAAGTATTAAGAACTATGGTTGGAGCAAAATTGCTTGAGAGTTGCTTAAGTACATATGTGGCAATACATGCCCACATG AATAGTGTTAAGAACTAAGAACTTAGCATTGGAGATGCTCTTAGAGGTGATATTTGGCAATGAATTGTCGATTTTTTCAG GCTTTGTGAGGTTTGTTGAAGTTCTGAAAGTGGAGCTTTTAGCCATCTTTATTGTTTGTGCTTGCATAGAGACTTGGGTT TTTTCCCAAGTTGCTCTTCTCAAATGGCTTTAGATTTGGTTCGCAATAAGTTTCAAACTTTCTAATAAAGCTTGGTGCTT CTTCAAAGTTCCAGCTGTTGTTTCATGAGTGCCTCCTCGTGGTCTATCTACTAAGCTCTCTTTTTTCTTTAGCTCTTGTA CACAAATGTATTTTTCTTATGTATAATCATGTTATTGTCCTCATTTTCTTAACACCTAACTAGCATGACTGGC
CDS sequence (LotjaGi3g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAAACAACTCCAATTACAACAACAACACCAATAAATCTGACCTGAGGAAAGGTCCTTGGAGTATAGAAGAAGA CATGATGCTGATCGCGTATGTGGAGAGAAATGGTGAGAATTGGAATGCTGTGAAGAATAATTCTGGGTTGCTCAGGTGTG GCCCAAGTTGCAGGCGTAGGTGGGTGAATCATCTAAAGCCTGGTCTCAAGAAGGGTGCAATTTCTGCTGAAGAACAAAGA ACCATCGTGGAACTTCATGCAATGTTTGGGAACAAATGGGCCAAAATAGCTACTCAGCTACCTGGCAGGACTGACAATGA GATCAAGAACTTTTGGCATAGCAGGGTGAAAAAGCGCGAGAAAGCAGGGTTACCCCTTTATCCCCCAGAAGTTCTTGCAA GAGCAGAAGCTTATCATCAGCCACAAAAGGAGAAGCAACTTCAACATATATTGTCTTCATCGTTTTCTGCAGGTGCTGAT TACCCCAACAACCCTGGTGTGCTTCTGCCAAATCAACCAACTTTTGGAAATCCTCTGGCAAACCACCTTGATCCTGCTGC AAATTACTACACCAGTTCATACCCCCCGCTGCCGCTCTCACCGCTGCCGCAGTTTGAGTTTTTCAATAAGAATGGTGGTG ACAGAAACATTGCTCTGCCTCTGTCCCCTGTTTCTGCATATGTAACAGGCTCGGCCTCTGAGATATCTGCGACCATAACT ACCGCAGCTGCTGGCTCTGTTACCCCTGTTTCATCCCTTGCTAGTGAATTTGAAGGTTGGCTTGAAGCTACAAGCAACAT GGCCAATGACTATCATGAAGATGTTGCACCGTTTCCATATCCTCCTCTTCCAGGAAACACTGGCTTGTTGGGTGATATGG TGCTTGATGCTGAGAGTCTATCTCTCAATAACAAGGGGAAGAACATAATGGCTGATCAGGATGATGCTGCGGAAGGAAGC AGCAACACTGTGAAGGAGAACAATGCTGAAGCTACTAATGAGAACCAGAGCAATGAACTTGGTGAAAATCAAATTGGAGT TCATGTGGAGGAGATGAATGATTATGATGACCTCTATAGCCAAATCGACTTTTCAGAATTGTCATGGACTTTTGGAGATT TCGGGAGCGGCAGTGACGTGTCTGATATATGCTAA
Protein sequence (LotjaGi3g1v0228600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAENNSNYNNNTNKSDLRKGPWSIEEDMMLIAYVERNGENWNAVKNNSGLLRCGPSCRRRWVNHLKPGLKKGAISAEEQR TIVELHAMFGNKWAKIATQLPGRTDNEIKNFWHSRVKKREKAGLPLYPPEVLARAEAYHQPQKEKQLQHILSSSFSAGAD YPNNPGVLLPNQPTFGNPLANHLDPAANYYTSSYPPLPLSPLPQFEFFNKNGGDRNIALPLSPVSAYVTGSASEISATIT TAAAGSVTPVSSLASEFEGWLEATSNMANDYHEDVAPFPYPPLPGNTGLLGDMVLDAESLSLNNKGKNIMADQDDAAEGS SNTVKENNAEATNENQSNELGENQIGVHVEEMNDYDDLYSQIDFSELSWTFGDFGSGSDVSDIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 71 | 62 | 1.8E-15 | – | |
| PANTHER | 14 | 283 | 270 | 3.6E-70 | – | |
| PANTHER | 14 | 283 | 270 | 3.6E-70 | ||
| ProSiteProfiles | 14 | 65 | 52 | 11.586 | ||
| SUPERFAMILY | 16 | 112 | 97 | 4.69E-26 | ||
| SMART | 18 | 67 | 50 | 2.5E-9 | ||
| Pfam | 19 | 65 | 47 | 1.9E-9 | ||
| CDD | 21 | 65 | 45 | 1.59411E-6 | ||
| ProSiteProfiles | 66 | 120 | 55 | 23.9 | ||
| SMART | 70 | 118 | 49 | 1.1E-13 | ||
| Pfam | 71 | 113 | 43 | 7.7E-12 | ||
| Gene3D | 73 | 150 | 78 | 5.9E-18 | – | |
| CDD | 75 | 113 | 39 | 2.48972E-10 | ||
| MobiDBLite | 314 | 341 | 28 | - | – | |
| MobiDBLite | 315 | 341 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0228600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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