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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0229600 |
| Transcript ID | LotjaGi3g1v0229600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|V7AKH4|V7AKH4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0229600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35932154..35935879) extracted from Lotus japonicus Gifu genome v1.2.
CCCGTACTCAAAAACCACATTCCAAAACCAAGGTCCATCTCACCAAAATTATACAATACAGTCAATCCAATTTTTGTGGC TGTTGATAGATTACCAAAACAATGCACATTAATTTTTTCCATTCTAAACCCACTATATATACTTCTTCTCACCTCGCTCT TTCCCTCAACTCAAAACAAACAGTACTTTAAAGATCAGTTCTATTTCGTCTTCTTCCCTCACAACACTCCTACCAAACTT CCTTTGGTTTCCAATAACATAATGGTAACTTTGGTCCCAACTGTTGGAGCTGTCAACTTGGCACCGGTACCATGTTATTC CAGCACCTTTTTCATTATAACAAACTGCTCAAATTAACTTTGGTCTCATACTCTCATCATTAGAAGTTTAGAACATGTTT GGTTTCATTTATAATTTTGATTTTTGTTTTTAATATTTATCTTTGAATATACTCTAGGCTACATGAACATACACGATGCA CCCATATTGTATCTATTAGTATGAGTAGAATTAGATTGAAAGTTCGTAACTTTATTTTAATTCCTTGTGATTTGAGTAGA TGTTTTAGTTTTCTTCCATCTGGGTATGTTCCATTTTGTTCTGAAACATGGATATTGCTATCCAATTTGGACTTCATGCA TGTTTCATTTGGGGACTAATTAGGGACTTATTTGGTACAGTTGAAATTGAATGGCTATAGCAATGGAACTCCTTTGACAA GCTCAGCATTCTTTGGAACTGGCTTGAAGAAAGTGAGTTCTGTGATTCCCAGCCAGAGGAATTTCAAGGTTTCTGCACAA ATTGAATATGATGAGGAGAAGCAAACCTCAAAGGACAGATGGGCTGGACTTGCCTATGACATTTCAGATGACCAGCAAGA TATTACAAGAGGGAAAGGAATGGTGGACACTCTCTTCCAAGCTCCCATGGAAAGTGGGACTCACTATGCTGTCATGAGTT CCTATGATTATATCAGTGCTGGTCTTCGCCAGTAAGTTCATGCTTGAAAATCTTTCTAGAATTGATTCTAAAACCAAAAT CAATTGTGATTTGTGATGACAAGCTTTTGTGTGTTTAATTGATTATGATAAAAGAGAATTTCATCCAAACATGCTATAAA TTGGTTTGAACTTATTAGCTAACAAAAATTTGAAGCTTTTGAAACTGTTTCCACTCTTGGATCTTCATGAATGCTGATAT GATGGACTTGTTTTCAGGTATAATTTGGACAACACCATGGATGGCTTCTACATTGCTCCTGCATTTATGGACAAAGTTGT TGTTCACATCACCAAGAACTTTCTAAGCTTGCCAAATATTAAGGTTCCTCTTATTTTGGGTGTTTGGGGAGGCAAAGGTC AGGGAAAATCATTTCAATGTGAGCTTGCCTTTGCAAAGATGGGAATCAAGTAAGTTTAATTACACGCTAGTATTTATTTA CATGATTTGGATACTCTAAAATGAAATGAGAGAATCATTTTAGATGATAAAGTAAGTAATTACACCACTTAATTCAAAAA TCAACAATTTTGATTGTGATCATATACTTTTGTTTATGAGTACATCTATAGCTAACTATGGTGTTACTTTACCCTTGACT CCTTCATTTTAGAGGAGTTAAACCCAAATTTACAACTGCCTCTCCCTGCCCCAAAATTTAAACAAAATGTTGGTTCAAGC TAGTCCATCAAAGAGGAAATTGACATACTCAACCTTAACTCTTTCTTCCATTGCCTTTTAATTCAGCCCTATCATGATGA GTGCTGGAGAATTGGAAAGTGGAAATGCTGGGGAGCCTGCAAAGTTGATCCGGCAGAGATACCGCGAGGCTGCAGACATC ATCAGAAAAGGAAAGATGTGCTGCCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGCGGAACCACACAATA CACAGTGAACAACCAGATGGTGAATGCTACCCTCATGAACATTGCTGACAACCCAACCAATGTCCAACTTCCTGGCATGT ATAACAAGGAGGAGAATCCCCGTGTCCCCATCATCGTCACTGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGT GATGGTCGAATGGAAAAATTCTACTGGGCACCGACTAGGGAAGACAGAATTGGTGTCTGCCAAGGTATTTTCAGAACAGA TGGTATTCCCACCGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCTATTGGTAAGCCATACCTCAACCGAA GTTTCAAGTTATAATTTTCAGTCCCCATTGTAGCTTCATAAACTTGACTTGGCAGCAAAGTAGGCATGTAAGTGTGTTTA GTTTCACATTTGGAAACCTTAGTATCAATTTTCATCAACTAGAATCACTTTTAAGTGGTTGCATACTTGTTTGGCAATCA ACTTAGAGAACTGATTTTAATCCGAAAATCAATTACGCGGAGAAGCTAGAGAGAGTAGTTTTTGCAGTCAATCAATTGTG AGATTTTATAATTAGATTTCACAACATTACCATATAGGAACCACTTTTCCCATAAACTTGTCCAAATATAAATGACTTCA CTTTCAATTAACTTTAACTAACTTTTACCATAATCTGACGACAACATAAATCGAAACATGCACTAAGATTACTTTGTACA CAAAACAACAGTGATGTAGCTCTATGCTAGTTGCATCACCGCTTAGCTTAACAAGAGATATTAACAGCGGGGCATGGAAC CAAAATTATTTGTAAAAGTAGGGACTAAAACTAAAAGAAAACATAGATGGTAGGAACTAAAACCAATTCTGAATGCATAA TGGAAGACTAAAAACTAATTTACGCCTAAGTTTTATTTGCTAATTCCTTGTCTTTATAAGTTATAGAAGTTTGAGACATT GGTATGGTGTCAGATTGTATGGATGAAATGTGAGTAATCAAATGCTTGATGCATTTTCTATGTAGACTTCTTTGGTGCCT TGAGGGCTAGAGTTTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTGGGAGTGGAGAATGTTGGGAGAAGGCTTGTG AACTCTAAAGAAGGACCTCCAACTTTCGAGCAACCAAAGATGAGTATTGAGAAGCTCCTAGAGTATGGAAACATGCTTGT GAAAGAGCAAGAGAATGTGAAGAGGGTTCAATTGGCTGACAAATACCTCAAAGAGGCAGCTCTTGGAGATGCAAATGAAG ATGCCATCAACACTGGAAACTTCTATGGTTAGACCTTTAATCCTAAAGCTCTTGATGGAAACTTGTGGCTTTAGGATTAT GGTTCAGCAATAAACAAGACTAAATAAGTGTTGTCTTATTGTCTGGATGCAGGACAAGGAGCTCAGCATGTTCATGTTCC TATCCCTGAAGGTTGTACTGATCCTGCTGCTGAAAACTATGATCCAACAGCTAGAAGTGATGATGGAAGCTGCACATACA AATTTTAGGTGATTTTGAGTAGATACATAGAGAGATTTGGGAAGTATCTAAAAGAATGCTACTTACTGTGGAATGTGGAT TAGTATTCGCTTTTTTATGTAAGGTGCATTAATATGAACTTTTCAGTTGTACACTTTGTGTGAATTCTGGTGTAACCCAT GGTTGGGTTTTATTGAGTGACATCTTGTAGATATCATTATTGCCAGCACCCTTTCCTTCTTTCCTTTTGGATTTTTCACA ATCATCTGCCAAATTGGTGTTCATGAGTATATTTATATGAGTAAAA
CDS sequence (LotjaGi3g1v0229600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAACTTTGGTCCCAACTGTTGGAGCTGTCAACTTGGCACCGTTGAAATTGAATGGCTATAGCAATGGAACTCCTTT GACAAGCTCAGCATTCTTTGGAACTGGCTTGAAGAAAGTGAGTTCTGTGATTCCCAGCCAGAGGAATTTCAAGGTTTCTG CACAAATTGAATATGATGAGGAGAAGCAAACCTCAAAGGACAGATGGGCTGGACTTGCCTATGACATTTCAGATGACCAG CAAGATATTACAAGAGGGAAAGGAATGGTGGACACTCTCTTCCAAGCTCCCATGGAAAGTGGGACTCACTATGCTGTCAT GAGTTCCTATGATTATATCAGTGCTGGTCTTCGCCAGTATAATTTGGACAACACCATGGATGGCTTCTACATTGCTCCTG CATTTATGGACAAAGTTGTTGTTCACATCACCAAGAACTTTCTAAGCTTGCCAAATATTAAGGTTCCTCTTATTTTGGGT GTTTGGGGAGGCAAAGGTCAGGGAAAATCATTTCAATGTGAGCTTGCCTTTGCAAAGATGGGAATCAACCCTATCATGAT GAGTGCTGGAGAATTGGAAAGTGGAAATGCTGGGGAGCCTGCAAAGTTGATCCGGCAGAGATACCGCGAGGCTGCAGACA TCATCAGAAAAGGAAAGATGTGCTGCCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGCGGAACCACACAA TACACAGTGAACAACCAGATGGTGAATGCTACCCTCATGAACATTGCTGACAACCCAACCAATGTCCAACTTCCTGGCAT GTATAACAAGGAGGAGAATCCCCGTGTCCCCATCATCGTCACTGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCC GTGATGGTCGAATGGAAAAATTCTACTGGGCACCGACTAGGGAAGACAGAATTGGTGTCTGCCAAGGTATTTTCAGAACA GATGGTATTCCCACCGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCTATTGACTTCTTTGGTGCCTTGAG GGCTAGAGTTTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTGGGAGTGGAGAATGTTGGGAGAAGGCTTGTGAACT CTAAAGAAGGACCTCCAACTTTCGAGCAACCAAAGATGAGTATTGAGAAGCTCCTAGAGTATGGAAACATGCTTGTGAAA GAGCAAGAGAATGTGAAGAGGGTTCAATTGGCTGACAAATACCTCAAAGAGGCAGCTCTTGGAGATGCAAATGAAGATGC CATCAACACTGGAAACTTCTATGGACAAGGAGCTCAGCATGTTCATGTTCCTATCCCTGAAGGTTGTACTGATCCTGCTG CTGAAAACTATGATCCAACAGCTAGAAGTGATGATGGAAGCTGCACATACAAATTTTAG
Protein sequence (LotjaGi3g1v0229600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTLVPTVGAVNLAPLKLNGYSNGTPLTSSAFFGTGLKKVSSVIPSQRNFKVSAQIEYDEEKQTSKDRWAGLAYDISDDQ QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISAGLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILG VWGGKGQGKSFQCELAFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQ YTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCQGIFRT DGIPTDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVENVGRRLVNSKEGPPTFEQPKMSIEKLLEYGNMLVK EQENVKRVQLADKYLKEAALGDANEDAINTGNFYGQGAQHVHVPIPEGCTDPAAENYDPTARSDDGSCTYKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 472 | 472 | 0.0 | – | |
| PANTHER | 1 | 472 | 472 | 0.0 | – | |
| Gene3D | 121 | 305 | 185 | 1.3E-42 | – | |
| SUPERFAMILY | 126 | 331 | 206 | 6.86E-20 | ||
| Pfam | 161 | 302 | 142 | 5.2E-14 | ||
| Gene3D | 306 | 418 | 113 | 5.3E-49 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0229600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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