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LotjaGi3g1v0229600.2

Overview

Field Value
Gene ID LotjaGi3g1v0229600
Transcript ID LotjaGi3g1v0229600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ribulose bisphosphate carboxylase/oxygenase activase; TAIR: AT2G39730.1 rubisco activase; Swiss-Prot: sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic; TrEMBL-Plants: tr|V7AKH4|V7AKH4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0229600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:35932781..35935601) extracted from Lotus japonicus Gifu genome v1.2.

TGGACTTCATGCATGTTTCATTTGGGGACTAATTAGGGACTTATTTGGTACAGTTGAAATTGAATGGCTATAGCAATGGA ACTCCTTTGACAAGCTCAGCATTCTTTGGAACTGGCTTGAAGAAAGTGAGTTCTGTGATTCCCAGCCAGAGGAATTTCAA GGTTTCTGCACAAATTGAATATGATGAGGAGAAGCAAACCTCAAAGGACAGATGGGCTGGACTTGCCTATGACATTTCAG ATGACCAGCAAGATATTACAAGAGGGAAAGGAATGGTGGACACTCTCTTCCAAGCTCCCATGGAAAGTGGGACTCACTAT GCTGTCATGAGTTCCTATGATTATATCAGTGCTGGTCTTCGCCAGTAAGTTCATGCTTGAAAATCTTTCTAGAATTGATT CTAAAACCAAAATCAATTGTGATTTGTGATGACAAGCTTTTGTGTGTTTAATTGATTATGATAAAAGAGAATTTCATCCA AACATGCTATAAATTGGTTTGAACTTATTAGCTAACAAAAATTTGAAGCTTTTGAAACTGTTTCCACTCTTGGATCTTCA TGAATGCTGATATGATGGACTTGTTTTCAGGTATAATTTGGACAACACCATGGATGGCTTCTACATTGCTCCTGCATTTA TGGACAAAGTTGTTGTTCACATCACCAAGAACTTTCTAAGCTTGCCAAATATTAAGGTTCCTCTTATTTTGGGTGTTTGG GGAGGCAAAGGTCAGGGAAAATCATTTCAATGTGAGCTTGCCTTTGCAAAGATGGGAATCAAGTAAGTTTAATTACACGC TAGTATTTATTTACATGATTTGGATACTCTAAAATGAAATGAGAGAATCATTTTAGATGATAAAGTAAGTAATTACACCA CTTAATTCAAAAATCAACAATTTTGATTGTGATCATATACTTTTGTTTATGAGTACATCTATAGCTAACTATGGTGTTAC TTTACCCTTGACTCCTTCATTTTAGAGGAGTTAAACCCAAATTTACAACTGCCTCTCCCTGCCCCAAAATTTAAACAAAA TGTTGGTTCAAGCTAGTCCATCAAAGAGGAAATTGACATACTCAACCTTAACTCTTTCTTCCATTGCCTTTTAATTCAGC CCTATCATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCTGGGGAGCCTGCAAAGTTGATCCGGCAGAGATACCGCGA GGCTGCAGACATCATCAGAAAAGGAAAGATGTGCTGCCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGCG GAACCACACAATACACAGTGAACAACCAGATGGTGAATGCTACCCTCATGAACATTGCTGACAACCCAACCAATGTCCAA CTTCCTGGCATGTATAACAAGGAGGAGAATCCCCGTGTCCCCATCATCGTCACTGGTAATGACTTCTCAACATTGTATGC TCCTCTCATCCGTGATGGTCGAATGGAAAAATTCTACTGGGCACCGACTAGGGAAGACAGAATTGGTGTCTGCCAAGGTA TTTTCAGAACAGATGGTATTCCCACCGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCTATTGGTAAGCCA TACCTCAACCGAAGTTTCAAGTTATAATTTTCAGTCCCCATTGTAGCTTCATAAACTTGACTTGGCAGCAAAGTAGGCAT GTAAGTGTGTTTAGTTTCACATTTGGAAACCTTAGTATCAATTTTCATCAACTAGAATCACTTTTAAGTGGTTGCATACT TGTTTGGCAATCAACTTAGAGAACTGATTTTAATCCGAAAATCAATTACGCGGAGAAGCTAGAGAGAGTAGTTTTTGCAG TCAATCAATTGTGAGATTTTATAATTAGATTTCACAACATTACCATATAGGAACCACTTTTCCCATAAACTTGTCCAAAT ATAAATGACTTCACTTTCAATTAACTTTAACTAACTTTTACCATAATCTGACGACAACATAAATCGAAACATGCACTAAG ATTACTTTGTACACAAAACAACAGTGATGTAGCTCTATGCTAGTTGCATCACCGCTTAGCTTAACAAGAGATATTAACAG CGGGGCATGGAACCAAAATTATTTGTAAAAGTAGGGACTAAAACTAAAAGAAAACATAGATGGTAGGAACTAAAACCAAT TCTGAATGCATAATGGAAGACTAAAAACTAATTTACGCCTAAGTTTTATTTGCTAATTCCTTGTCTTTATAAGTTATAGA AGTTTGAGACATTGGTATGGTGTCAGATTGTATGGATGAAATGTGAGTAATCAAATGCTTGATGCATTTTCTATGTAGAC TTCTTTGGTGCCTTGAGGGCTAGAGTTTATGATGATGAAGTGAGGAAGTGGATTTCTGGTGTGGGAGTGGAGAATGTTGG GAGAAGGCTTGTGAACTCTAAAGAAGGACCTCCAACTTTCGAGCAACCAAAGATGAGTATTGAGAAGCTCCTAGAGTATG GAAACATGCTTGTGAAAGAGCAAGAGAATGTGAAGAGGGTTCAATTGGCTGACAAATACCTCAAAGAGGCAGCTCTTGGA GATGCAAATGAAGATGCCATCAACACTGGAAACTTCTATGGTTAGACCTTTAATCCTAAAGCTCTTGATGGAAACTTGTG GCTTTAGGATTATGGTTCAGCAATAAACAAGACTAAATAAGTGTTGTCTTATTGTCTGGATGCAGGACAAGGAGCTCAGC ATGTTCATGTTCCTATCCCTGAAGGTTGTACTGATCCTGCTGCTGAAAACTATGATCCAACAGCTAGAAGTGATGATGGA AGCTGCACATACAAATTTTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0229600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGACACTCTCTTCCAAGCTCCCATGGAAAGTGGGACTCACTATGCTGTCATGAGTTCCTATGATTATATCAGTGC TGGTCTTCGCCAGTATAATTTGGACAACACCATGGATGGCTTCTACATTGCTCCTGCATTTATGGACAAAGTTGTTGTTC ACATCACCAAGAACTTTCTAAGCTTGCCAAATATTAAGGTTCCTCTTATTTTGGGTGTTTGGGGAGGCAAAGGTCAGGGA AAATCATTTCAATGTGAGCTTGCCTTTGCAAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAATTGGAAAGTGG AAATGCTGGGGAGCCTGCAAAGTTGATCCGGCAGAGATACCGCGAGGCTGCAGACATCATCAGAAAAGGAAAGATGTGCT GCCTCTTCATCAATGATCTTGATGCAGGAGCTGGTCGTATGGGCGGAACCACACAATACACAGTGAACAACCAGATGGTG AATGCTACCCTCATGAACATTGCTGACAACCCAACCAATGTCCAACTTCCTGGCATGTATAACAAGGAGGAGAATCCCCG TGTCCCCATCATCGTCACTGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGAATGGAAAAATTCT ACTGGGCACCGACTAGGGAAGACAGAATTGGTGTCTGCCAAGGTATTTTCAGAACAGATGGTATTCCCACCGATGACATT GTCAAGCTTGTTGACACCTTCCCTGGCCAATCTATTGACTTCTTTGGTGCCTTGAGGGCTAGAGTTTATGATGATGAAGT GAGGAAGTGGATTTCTGGTGTGGGAGTGGAGAATGTTGGGAGAAGGCTTGTGAACTCTAAAGAAGGACCTCCAACTTTCG AGCAACCAAAGATGAGTATTGAGAAGCTCCTAGAGTATGGAAACATGCTTGTGAAAGAGCAAGAGAATGTGAAGAGGGTT CAATTGGCTGACAAATACCTCAAAGAGGCAGCTCTTGGAGATGCAAATGAAGATGCCATCAACACTGGAAACTTCTATGG ACAAGGAGCTCAGCATGTTCATGTTCCTATCCCTGAAGGTTGTACTGATCCTGCTGCTGAAAACTATGATCCAACAGCTA GAAGTGATGATGGAAGCTGCACATACAAATTTTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0229600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDTLFQAPMESGTHYAVMSSYDYISAGLRQYNLDNTMDGFYIAPAFMDKVVVHITKNFLSLPNIKVPLILGVWGGKGQG KSFQCELAFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV NATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCQGIFRTDGIPTDDI VKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVENVGRRLVNSKEGPPTFEQPKMSIEKLLEYGNMLVKEQENVKRV QLADKYLKEAALGDANEDAINTGNFYGQGAQHVHVPIPEGCTDPAAENYDPTARSDDGSCTYKF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32429
1 384 384 8.0E-268 –
PANTHER
PTHR32429:SF15
1 384 384 8.0E-268 –
Gene3D
G3DSA:3.40.50.300
33 217 185 8.3E-43 –
SUPERFAMILY
SSF52540
38 243 206 3.71E-20
IPR027417
Pfam
PF00004
73 214 142 3.4E-14
IPR003959
Gene3D
G3DSA:1.10.8.1070
218 330 113 3.6E-49 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0229600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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