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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0233100 |
| Transcript ID | LotjaGi3g1v0233100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Organic cation transporter, putative; TAIR: AT3G20660.1 organic cation/carnitine transporter4; Swiss-Prot: sp|Q9LHQ6|OCT4_ARATH Organic cation/carnitine transporter 4; TrEMBL-Plants: tr|A2Q643|A2Q643_MEDTR Major facilitator superfamily; Found in the gene: LotjaGi3g1v0233100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36746212..36751916) extracted from Lotus japonicus Gifu genome v1.2.
GAATATTCTTAAATATCCTTTACAACCTTCATTTATCTCTTATTTCAAATATTATATCTTTTCATCACACTACTCTCTCA ACAGATTTACACTCCCTTGAAGAAGCCATCATATTCGTGTGTTCTTTTTATATTGGAATAACGGTCCCAACAACGTTGCG CACGGAAGCTGAACCAACCAAAACCAGCGGAGAAAAACAAGAGAGAAGAACACACGCCCTAAATGGCGGCCACATTGTCC GACGACCTCCGTACGCCGATGCTCCCGGCGGCCGAGAAGAAGGCGGAGGTGGAGAAGATCTGCATCGACGAGATGCTGCA GAAGTATTGCGGGGAGTTTGGGCGGTGGCAGCTGAAGCACTTTGTCCTCACCAGTCTTGCTTGGGCGCTTGAGGCGTTTC ACACCATGGTGATGATTTTTGCCGATAGAGAACCGGATTGGAGGTGCGTCGCCGGCTCCGGTTGCAGCGCCGCCGTGGGA AGTGTTTGTGGTCTCCGTCCGGGGGAGTGGGAGTGGGTCGGCGGGAACGGTGCGTCGACGGTGTCAGAGTGGGGATTGAT TTGCGGTGAGAAATATAAGGTGGGGCTGGTCCAGGCCATCTTTTTCGCCGGCTGTATGATCGGTTAGTTCACTTTCTCAT TCTCTTTCTCTTTGTTTTTTATTTTTTTATATTAATGAATTTTTTTAAATCAAAAACATAAATTATACCCATCTTTGGAC CTTCCCATTCTCAACTCAAATTTCTCTAGCTCTTATCATTTAAAATTCAAATTATTTTTGTAGGATGAAAACATTTTTTA TTCCTAAATAGTTTAATATAAAAACTGGGTGAGTTGGTTTAGTGATTCAGCATTTAGTGGTTTCAATAAAAAAAAACTCA TTGTACAAAATCTTAGTGTTTAATGCGTTGATAGTACACTAGAGATTAGTCTTGGAGTATTGGTTATGAGATATCTTACT TAACACCGAATAAAATAATGCACTTGCTGCATAATATGAGAATAGATAATATTTTTGTAGCTCAATATGATATATACGTT TTTGTGAAACAGAGATGGTTTTTTTTTTTTTGGTGCTTGAGAGATGGTTCTTTTTAAATCAAACATGTCACATGCAACTA TTTATTTATTTACGAAGTAAACAAAAATTGAATAGTTGTATTTTGAAGTTGTCAGGAGGGTGTGAATGGTTCAGAAAATA TGAGAAAAATATAGATATGTATGATCTTGTGAGATTCTTGTTTGTTAGAGGGTATTGGGTTAGGACGAGGGAGAATATGA ATAAAGAATAAAGATGATGATGAGCAACGAGGTCGGCGTGACAGAGAGGAGAAGAAGGAGAAAACGGAACACGATTACTC TGAGTCTGTTACAGAATGATAAAAAAGTCTAAAACAGAAACGGACCAAAGTAGACCTTTCTGGTTGTCGTTTCGGTACTG ATTTATTTGACTACTAGTCTAGTAGTATCTCTTTAGATAAGATTGTTGTCTCAACAACCAAGTGGATGACAGTACGTCAG ACTAGTTTAGATGAGATAATAATATTTTAACGTAAGTTAAATTTTTTTAAAATAAATGTTAGGGTGAAATCAGAAATATT GGGTCAGGGGTTAAACTTTAACACAACAAATAAATTAACAACTACTACTTGAAAGAGACCTTAAAAAATTGTTTGGGCAA AAATAACAATTGAATATTATGAGACTTTTTTATGAGGCAACCACCTATTTTGGTATGACTTGGTTAAGTCCCAAATACTT GTTACGATATTTTATTTGGAGTGATTTGAGTAAATTTATCTATAGAATAATATTTTTGACAAATACACATCCTCCCATAA GATTTTTTATTATTGTTCTGATCACATATTATTTAACAAAACATAAAAGGTCTTATATTATCAAAAAAAAATATGCGCAT TTTATAAAATAGGGCAATTAGTAAGATGAGTTTAATTTCTATGCACTAAAGATGTAAAGTTTTTTTACACCGTCAACCAA TTAAATTTCAAGGATGCATCACGTCAATTAATGAAATTAAATAAAAAGAGAGATATGATTTTCTCACATCCTTAAAATTT GATTGGTTTGCGGTGAAAAAAAATCTTACACCAATAGTGCATCATCATTTTTCTCTAGTGAGATTAGCTCTTATATTTTA ATATCAAACAAGCTTATCCGTAAAGGTTATAGACCTACTCACAATTAATTTATTTATATGTACATCTAATTGAATGTTCA CAAATTAGAAAATAAATGTAATTGTTGTTTCTACGTCATATAGTGTTATTTTAGACCAACTATGCTCATTATTGAACTCT ATCTACAACAAATAAAATGAGTTTATCTTCAATGATTATTTACAATTTAAAAAAAAAATAAAAAAAAAATGATTATTTAC GGTTCACTTTCATTTTACATTATTTTTATATTTTTGTTAAGTAGTAGATAAACTCATATTTTTTAATAATGACTTTTTTA CAAAGGCATATGCTTTCCAACTTAGTTTAACTGGATAGATATGCTCCCCGGCCCGCCGGCTTCATTATATTAATATATCC TTGATTTCCGTGTACTATTGTTTCACTTAACCATAATTAAAAACTTGAATTTTAACAGGAGAATTATTTATGAAAAAAAT TACTATTAGTTAATTTTCTCTACAATGAGATGTGATTTTAAAAGTTTTCTATGGAAAAGCAAACCAAACATGTAGAATGA TTTCGAGCACACAACTAGTTTAGTCCATGCTTCCTTTTTCACATTGTGTTTCATTTCTTTAATGTATATAGTGACCTTAA AGTTCTATACACACTAACATCTAATATTACTCAAATTTGACTTTTACTCTCTTTTTGTTTTCACTTTTTCTCTCTTTTGT TTTCACTTTTTCTTTCTCTTCCAACCACGACATGAGTAGTCCAATTTCTGTTCATTGGTCCATCTGTCTTTAATAAGAAT TGATTGATAACGTTCCCCTGCATCATGCCATGGTGGTGCCGGCATTTATTTATGTAGGAACAGAAGTGAATATCCCCCCA TTTCACCGTGTCCACTTAACACTTGTGTGATGATCACTCACGTACCTTGACAGAGTAGTGGACCAGTGGTAGTAAAATTG CCATTCTTGAGAGAGTTATTGATGCCAACATTGATACATTTGTGGTTACTTTCCTTTTCATTTCAATTTTACATCCCATA TCTCTAATTTTTTCCCATCACATTTAGAGATAACAATTTTCAACTGAAATGACAATGGTGATCCCCATGTTAATTGTCCC ATTTGGGATCCGATCTCAATAACATTTGTTCATGAAAAATGAAGATGAGGTAAAAATCTTCTCGAGATGAATTTGAAATT GAGGACAAGGATCATACTTCTTGTTTAGTAGAGTCCTCGCTCCGGTATTTATTTATAAAATTATAATAAGAGGAGGACTC CATTCACTCCAAGTTAAGTAGTTAAAAGTGTTGGATGGATTGGATGGAGATGATCCAAATTGAATATAACAGGTACTATT CACTATGGCATAGAAACAATATGATACTAATCCTATTGCAATTTCAGGTGCTGGCGTATTTGGTCACCTCTCAGACTCCT CTCTTGGAAGGAAAGGCTCTCTCACAGTGGTTTGCGCCCTCAATGCAGTCTTCGGCTGCTTAACAGCAATGTCCCCTAAC TACATCACCTACGTCTTCCTCCGCCTCCTCACCGGCTTCACTACCGGTGGTGTCGGCCTCTGCGCCTTTGTCCTTGCCAC CGAACCCGTCGGCCCCACCAAGCGAGGCGCTGCGGGAATGTCCACCTTCTACTTCTTCTCCACCGGCATCGCGCTCCTAT CCGGCATCGCCTATGTCTTCCAAACATGGCGAACCCTCTACATCGTCACCTCCATCCCCTCGTTCCTCTACATCCTCCTC GTCCTTCCCTTCATCTCTGAGTCCCCAAGATGGTACAGTTACAAATATAATATAAAATTATTCATGTATCTCAATAACTC AAATTTTTAGGATAATTAATTCATGACATTGGAATAATTGGTTCATGACAGGTACCTTGTTCGTGGAAGAATAACCGAGG CCACAAAGATCATGTCCTCGATCGCTTCATCCAACGGAAAGCACCTACCAGAAGGGGTGCTTCTCGGACTGGATGAAGAC GTATCAGCATCAGGATCAGCATCAACATTACCATTACTAACACACAATGGCTCATGCAACAAGGATGCAGTTGCTGGGTC CATAGTGGACGTGCTTCGCTCTCCCATAACACGCATTAGATTGTTCCTAGCCGTGACTCTAAACTTCTTAGCCTCTGTAG TGTACTATGGTCTCAGTTTAAACGTGACGAACCTCGAAACCAACCTCTACATGAGCGTATTGCTGAACGCGGTGGCCGAG ATGCCTGCGTTCACGATAACCGCGGTGTTGCTGGACAAGTTCGGGAGGAGGCCGCTGGCGATAGGGACAATGTGGTTCAG CGGGTTCTTTTGCTTTTTGGGGTGTCTGACTGGAAATGTTGGAGTGTGGAAGGTGGTGAGGATGGTGTGCGGTGTATTGG GGATTTTTGGGATGGCGGGGACTTATAACTTGTTGTTTATTTACACGTCGGAGCTGTTTCCCACGGTGGTGAGAAATGCC GCGCTTGGTTGCGCCACGCAGGCCTCGCAGATGGGGGCTATACTGGCGCCGGTTGTGGTGGTTATGGGTGGTGCTTGGCC ATTTGTGGTGTTTGCTGCCTGCGGGATGTTTGGTGGGGTGTTTGCGTTTTATCTGCCGGAGACGCTGAACCTGCCACTCT ATGATACTTTTAATGGATTAGAAGCTGGACTTGCATAATGCTGTGTCTATTAGTACCACTATCTACATGTTTATGTGTTA GGCAATTGTTTTGCTTTTCTTTTCAATTTTGCTTTGATATGGCAAATTTTTGTACAATAGAAAAAAGAAATCTCAGAAGT TTGAAGGCTTTACTTTGTGGGAAAAAAGGGTAGATATATTGCTTAAACTTGAGAGCATTTCAGATTTGGTTCTTATCTCC CTTGAGTTGAACACTTCAAAAAATTATTACATAGTGTAATTCTCTTAAACTCGTTTCAAAGCTACCACCAGCACGACTAA TATTGCCAACCCCATAAAAGTTCCTCCCATGACTATGTGATCATTGAAGTTTGCTGTTGTTGTTCCATGATCATCAGCAC CAGCAGACAAATTTTGAAGAGTTGAGAGCCCAAATATGGTATGAAAGTAGTTTGACACATTGCTTACCATTTCAGATACG GTAAGCTTGACATTGTGGATTACTCTTAACAAATCAACAAAATCAATTCCTGAGTTAGAATCAGGTAACTCTCCAGCTTT TTCAAGAGCTCCCTTTACATCAAAACCAGAAACTGCAGCAAAATCTGTCTTAGCATCCAATAGCATAGATTAGAAAAAGA GTAATGGAAGGTATGTAATAGGAAAAAAAAGAAAAAGAGGGATCTAATTTTTCTCCGTAGTCAATTCTATAAGTCATAAG TTACTCAAAGAAGCTTCTGTCCAAAATTGATTGACTTTAGAATCAATTGTATACGAGGATTTCAAATTAAGTTATGTTAC CACTTACCTATGTGCTGTGATTGGAAGAAATCTTGTAACGTGGGATTTTGCGCAATTGCGTTCCATATATTCGGGTCACA AGCAATAGAAGCAACAGCATTCTGG
CDS sequence (LotjaGi3g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCCACATTGTCCGACGACCTCCGTACGCCGATGCTCCCGGCGGCCGAGAAGAAGGCGGAGGTGGAGAAGATCTG CATCGACGAGATGCTGCAGAAGTATTGCGGGGAGTTTGGGCGGTGGCAGCTGAAGCACTTTGTCCTCACCAGTCTTGCTT GGGCGCTTGAGGCGTTTCACACCATGGTGATGATTTTTGCCGATAGAGAACCGGATTGGAGGTGCGTCGCCGGCTCCGGT TGCAGCGCCGCCGTGGGAAGTGTTTGTGGTCTCCGTCCGGGGGAGTGGGAGTGGGTCGGCGGGAACGGTGCGTCGACGGT GTCAGAGTGGGGATTGATTTGCGGTGAGAAATATAAGGTGGGGCTGGTCCAGGCCATCTTTTTCGCCGGCTGTATGATCG GTGCTGGCGTATTTGGTCACCTCTCAGACTCCTCTCTTGGAAGGAAAGGCTCTCTCACAGTGGTTTGCGCCCTCAATGCA GTCTTCGGCTGCTTAACAGCAATGTCCCCTAACTACATCACCTACGTCTTCCTCCGCCTCCTCACCGGCTTCACTACCGG TGGTGTCGGCCTCTGCGCCTTTGTCCTTGCCACCGAACCCGTCGGCCCCACCAAGCGAGGCGCTGCGGGAATGTCCACCT TCTACTTCTTCTCCACCGGCATCGCGCTCCTATCCGGCATCGCCTATGTCTTCCAAACATGGCGAACCCTCTACATCGTC ACCTCCATCCCCTCGTTCCTCTACATCCTCCTCGTCCTTCCCTTCATCTCTGAGTCCCCAAGATGGTACCTTGTTCGTGG AAGAATAACCGAGGCCACAAAGATCATGTCCTCGATCGCTTCATCCAACGGAAAGCACCTACCAGAAGGGGTGCTTCTCG GACTGGATGAAGACGTATCAGCATCAGGATCAGCATCAACATTACCATTACTAACACACAATGGCTCATGCAACAAGGAT GCAGTTGCTGGGTCCATAGTGGACGTGCTTCGCTCTCCCATAACACGCATTAGATTGTTCCTAGCCGTGACTCTAAACTT CTTAGCCTCTGTAGTGTACTATGGTCTCAGTTTAAACGTGACGAACCTCGAAACCAACCTCTACATGAGCGTATTGCTGA ACGCGGTGGCCGAGATGCCTGCGTTCACGATAACCGCGGTGTTGCTGGACAAGTTCGGGAGGAGGCCGCTGGCGATAGGG ACAATGTGGTTCAGCGGGTTCTTTTGCTTTTTGGGGTGTCTGACTGGAAATGTTGGAGTGTGGAAGGTGGTGAGGATGGT GTGCGGTGTATTGGGGATTTTTGGGATGGCGGGGACTTATAACTTGTTGTTTATTTACACGTCGGAGCTGTTTCCCACGG TGGTGAGAAATGCCGCGCTTGGTTGCGCCACGCAGGCCTCGCAGATGGGGGCTATACTGGCGCCGGTTGTGGTGGTTATG GGTGGTGCTTGGCCATTTGTGGTGTTTGCTGCCTGCGGGATGTTTGGTGGGGTGTTTGCGTTTTATCTGCCGGAGACGCT GAACCTGCCACTCTATGATACTTTTAATGGATTAGAAGCTGGACTTGCATAA
Protein sequence (LotjaGi3g1v0233100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATLSDDLRTPMLPAAEKKAEVEKICIDEMLQKYCGEFGRWQLKHFVLTSLAWALEAFHTMVMIFADREPDWRCVAGSG CSAAVGSVCGLRPGEWEWVGGNGASTVSEWGLICGEKYKVGLVQAIFFAGCMIGAGVFGHLSDSSLGRKGSLTVVCALNA VFGCLTAMSPNYITYVFLRLLTGFTTGGVGLCAFVLATEPVGPTKRGAAGMSTFYFFSTGIALLSGIAYVFQTWRTLYIV TSIPSFLYILLVLPFISESPRWYLVRGRITEATKIMSSIASSNGKHLPEGVLLGLDEDVSASGSASTLPLLTHNGSCNKD AVAGSIVDVLRSPITRIRLFLAVTLNFLASVVYYGLSLNVTNLETNLYMSVLLNAVAEMPAFTITAVLLDKFGRRPLAIG TMWFSGFFCFLGCLTGNVGVWKVVRMVCGVLGIFGMAGTYNLLFIYTSELFPTVVRNAALGCATQASQMGAILAPVVVVM GGAWPFVVFAACGMFGGVFAFYLPETLNLPLYDTFNGLEAGLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 46 | 46 | - | – | |
| PANTHER | 17 | 522 | 506 | 2.3E-283 | – | |
| PANTHER | 17 | 522 | 506 | 2.3E-283 | – | |
| ProSiteProfiles | 46 | 508 | 463 | 22.203 | ||
| Phobius | 47 | 67 | 21 | - | – | |
| Phobius | 68 | 119 | 52 | - | – | |
| CDD | 87 | 504 | 418 | 6.07728E-127 | – | |
| Gene3D | 103 | 516 | 414 | 6.7E-65 | – | |
| Pfam | 117 | 512 | 396 | 1.5E-33 | ||
| SUPERFAMILY | 119 | 510 | 392 | 5.62E-44 | ||
| TMHMM | 120 | 142 | 23 | - | – | |
| Phobius | 120 | 139 | 20 | - | – | |
| Phobius | 140 | 150 | 11 | - | – | |
| Phobius | 151 | 170 | 20 | - | – | |
| TMHMM | 152 | 169 | 18 | - | – | |
| Phobius | 171 | 175 | 5 | - | – | |
| Phobius | 176 | 197 | 22 | - | – | |
| TMHMM | 176 | 198 | 23 | - | – | |
| ProSitePatterns | 181 | 206 | 26 | - | ||
| Phobius | 198 | 208 | 11 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 209 | 231 | 23 | - | – | |
| Phobius | 232 | 236 | 5 | - | – | |
| Phobius | 237 | 256 | 20 | - | – | |
| TMHMM | 237 | 256 | 20 | - | – | |
| Phobius | 257 | 338 | 82 | - | – | |
| TMHMM | 338 | 360 | 23 | - | – | |
| Phobius | 339 | 356 | 18 | - | – | |
| Phobius | 357 | 367 | 11 | - | – | |
| TMHMM | 367 | 389 | 23 | - | – | |
| Phobius | 368 | 389 | 22 | - | – | |
| ProSitePatterns | 385 | 401 | 17 | - | ||
| Phobius | 390 | 395 | 6 | - | – | |
| Phobius | 396 | 417 | 22 | - | – | |
| TMHMM | 399 | 421 | 23 | - | – | |
| Phobius | 418 | 422 | 5 | - | – | |
| Phobius | 423 | 446 | 24 | - | – | |
| TMHMM | 426 | 448 | 23 | - | – | |
| Phobius | 447 | 457 | 11 | - | – | |
| Phobius | 458 | 477 | 20 | - | – | |
| Phobius | 478 | 482 | 5 | - | – | |
| TMHMM | 481 | 503 | 23 | - | – | |
| Phobius | 483 | 503 | 21 | - | – | |
| Phobius | 504 | 523 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0233100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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