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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0235600 |
| Transcript ID | LotjaGi3g1v0235600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fertilization independent endosperm 1 protein; TAIR: AT3G20740.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LT47|FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM; TrEMBL-Plants: tr|I1JFF5|I1JFF5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0235600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37471546..37476689) extracted from Lotus japonicus Gifu genome v1.2.
ATAATCTTATAATTGAATTTAAAAAAGTATCAAAAAACCCAAACAAACAAGTTCTCACACTTGAAGAGAAGCAGAAGCCA TTGGAGAAGAGAAGTGGGTTTGGCAATGTCGAAGTTATCAGCTTTGGGATGTGAACCAGTGACTGGTAACCCGCTTGCTC CGAAGAAAAGAGACTATAAAGTCACCAATCGCCTCCAAGAGGGGAAGCGTCCTCTATACGCCGTCGTTTTCAACTTCATC GACTCCCGCTACGTCAACGTTTTCGCCACTGTTGGTGGCAATAGGGTTCGTACTCTTTTCTCTCTTTTTTCCACAACCCA TTTTTCTTTGCACTCCAAAGTTTCAATCTTTAATGCTTTATCTTGTTAATTCTTCAGGTTACCATTTATCAATGTCTTGA AGGAGGTGTTATTGCTGTTCTGCAGTCTTATGTAGATGAAGATGTGAGTCCACACTATACCCTTTTTTTTATTTGATGTT TCTAACCATAGCTTTGAGGGTTGTTGTTGTTGTTGTTATTGTTGTTGTTGTTATCTACTATCACTTGTTTTATACAAGGA TTAAGGCCCCGTTTGGGAAAACAGCTTAACTAAGCGATATGGTCATAAGCCTCATAAGCGCGCTTATTCATAAGCTATTT TAAAAAGTTTATTAAAATAAATTGAAAATAAGTATATATAAGCATAAGCTCTTTTTCATAAGCTATCTTGAGTAGCTTAT GAAAATAAGCTCAAAACAGCTTATGATAGGTCATAAGTTGTCTGCATAAGCTCTCCCAAACACTTGCACAAGTGCTTATG CTATCAGATAAGCTCTCCCAAACAGGGCCTAAATGTACTTGTAGGTTGCTACTGTGATTCTTCTAAAAAACAAGTGAAAA TACATTAGCAAATTACACACCCCACTTGTTTATTTAGAAGAAATTTGAATCTTTAGCTATTCTTTTGGAGAGTAGGTTAC TAATGGACATGTTATAAAATATAAGTGGGAGTTCCTTAGGAATCCCCTATGTTATTATTATACTGCACCAATTTTAATCT GATTTTTTTGTAGACCAGAAGGATGAATCTTTTTACACTGTAAGCTGGGCATGCAGTGTTGATGGTAACCCATTTGTTGT TGCTGGAGGAATCAATGGTATAATCCGAGTCATTGATACTGGCAGTGAGAAGATACACAAGGTATTTTGGTAGTAACAAG AGTAAAAGTTTTGTAGATCAGTATTTTTGAAGCATAAGAATGAGATTATTATTATTTTTTATTTTTTGTTTGGTTGATTG TTTGGACTTCAGAATTTTGTGGGAACTGTTGCAAACTGAATGCCTTAAATTATTTATCTGTTTAATTCAATAATGTTGAC GTTAGGCATGTAATTCCTGCGGCTCCCTGACATGATACCCTTCTCTTTCCAGAGTTTTGTTGGCCATGGGGACTCCGTAA ATGAAATCAGGACTCAAACGTTGAAGCCATCACTTGTGATATCTGCAAGCAAAGTAAATAGTGCCTCTCTTTGTTATTTC ACTAACTAAAGAATCACTTATTTTTTCACTCAATGACATCTGAGGTTGACCAGGATGAATCTGTCCGGTTATGGAATGTT CATACTGGAGTGTGCATTTTGATATTTGCTGGAGCTGGAGGACATCGTAATGAAGTCTTAAGTGTTGTAAGTGCATTTGC ATCTAACGTATCTCGCCTTTTTATTGATTAATTACCAAGTCAATAATAGAAGTTTCGATTTTTAGAGATTCATCTGACCG ACTTTTTTTTTCTTATTGTAGGATTTTCATCCGTCTGATATGAATAAAATTGCCAGTTGTGGCATGGATAATACTGTAAA GATATGGTCTATGAAGGGTAAGGTATTTCGTTTTATATGTACTGGACTACTGGTGTTATTGTATTGTTGCTTTTGTTTAT TCTGGTATCATCTAGTTGAGGTTCACTGTATTTCCCATAATGTAATGGATGATACCATAGGCTAACAAAGATGAAAAGTA AACCAGGGAAGATTATATATTAAGTTTTCCCCCCCAAAAGTAGTTATGACTGTTTTGGTTTGCTTTGACTTGGTTTGATT ATCAGATTCAGAAAATAAACATTTGTAAAATAGTGCATCACCGACACTACGTAGTTGCAACCAATGTTAAATTTAGTTTA AGAGGTAAAGGCTTTAAATTGAAAGACGGATGAGAATTTGATAAGTTTATAACTCTTTCCTGTTTGGATTCAACAACTTA ACTTCTGGACTTTGTTTACAGGAATTATACTTTTTTTTTTGGGTGAGTAGAGGGTCGTTTTGGGTGAGCAAAGGGTCTTT TATATTTGTTTCATGATAACATGGAAGCTGCAAGTAACAATTTTTTAAAAAATTTCTTGGAACATTCTTGTGGGGTTGTG ATGCCCCATTCTGTTTATGCACTGGATCAATGCAAATGGGTAGTTGAGTTGATGATTTTAAGTTGGGTCCCACCATGCAG TATAGTGCCCTGTGCATAAAAACCAGAATGTACTTGATGTGTGCATAAAATATCTCATCTATTATATTGAGCCTATTTGG ATACAGATTTATTAGAGCTTATCTTCTAAAAATGCACTTATAAGCTACAATAAGTGCTCTTTGGTTTGCATCCAAACAGG TTGGTAGTGTACCAATTTTATTCTTGATTCTTGTCCTTTTCATTGCTATCCATCATGTTCTTTATGTTGCTGCAGAGTTC TCGAGCTATGTAGAAAAATCATTCACGTGGACAGATCTTCCTTCTAAGTTTCCTACAAAATATGTGCAGTTTCCTGTAAG TAATAATTTATTTTAGGTACATATGATGGATCTTTTCTAATTGAATTAGTATGTAATTTCAGATATTCAATGCTACAGTT CATACAAATTACGTTGACTGTACTAGATGGTTGGGTGATTTTGTCCTCTCAAAGGTGAGTGGTTGCTCTTTCCAGCATCT GTCTACTTTCTGGTGGAAATTAGAAGTTAGGTTTGATGTAAGGGGGAAAAATTTGCTCCCTAGTTGAAATTGATTTAACT TTCACCACTTCTATTTGTAACATAAACTTATATTTTTCCATGTTGCTTAGTCTATGTAGGAGGTCATGTTTTCCTTTTCT CTATAGCCTTTAAATATACTTTTCTTATTTTATTAAAAAAAGATCTTTAACAATTGGGAGAGTAAAAGTTTGAAAGTCTT TTTTGGCCAGTACCCCAATGAGCAATTAGTGTTTTGAATTTTCTCTGATTTCCTAAGTTATGTATCAATTCCTAAAGTGG TGGTTTATGTTACCTTTTCAGAGTGTTGACAATGAAATTCTCTTGTGGGAACCTAAAGTGAAGGAACAAACTCCAGGGGA GGTTGGTTAGAATTATTATCTTTTTTTTTTTTTGCTAAAAAACACTTTTGGCCCCTGATGTTTTAAGTTTGTGCAAATTT GATAAGTTTATAACTCTTTTTTCAAGTTCTGTTTTAATGTGCAAGTTTTCATCAGCTTCATTTTTTTCTCTGTTTTTTTC CTTTCCTGGGTTTTTAGGGTGTAGTGGACGTCCTTCAGAGATACCCTGTTGCAGAGTGTGACATCTGGTTCATCAAGTTT TCTTGTGATTTCCATTTCAAGGAAGTTGCAATAGGTAAGAATAACTCATTTCAATTTTTTATAAAGTTTGAAAGAAGACC TTTGAAGGCACCAGTGAGAAGGGTTGATAACATGGTATTTACTCCTATGAAAAGTGGTAGAGGAGGCCAAAAAGAACTTG GGAAGATATTGTTAAAAATGATATCATTATCAATAATATCTCTCATAATTTGGTTTTTGATCGAGCTCAATAGCGTAGTG TGATCTATATAGCTGACATCACTTCATGGGTTAAGGCTTCTTTCTGTTGTTGTTGATGTTGTTATTGTTGTTGTTTTTGT TTTTGTTGATGTTGTTGTTGTTGATGATGATGTTGTTATTGATGTTGTTATTGTTGTTGCTGTTGTCTTTGTTGTTATTT CCTTACAGCTGTAGTTCTGCTGTGACAAGACCAGTGTATTACACATTTTGTTCCTTACATATTTCTGACAGCTTTAACTA CTTTTGTTGGCAAGTTTTCAACTTCAACCTTTTACTGAGTTTCCACTTCCTTTTGTTTTTTCTGCGTCTGCCAGGCAACA GGGAAGGGAAGATTTTTGTTTGGGAATTGCAGTCAAGTCCTCCTGTTCTTGTTTCAAGGTTAGTTTATCAAGTTCTAATC ATTGGAATTTTTATTTTTATCAATTTTTTGTGCTCAATCTCAAGTCACTTTCTTCAGGTTGTCTCATCTTCAATCAAAAT CTGTAATCAGGCAGACAGCTATGTCCTATGATGGAAGGTAATTTTCTTTATATTTTTATTTAAGTTCAATAACTATGCAC TGACACTGTAAACAAGTTTTACACGGATATTCAATCCGGATTCACTGCTTTACCATATCATAATGATTTTAAAAAGTAAA TACAGAAAAGGAAACCTGGTAAGATATGATTGAATATCTGTATTAAACTCTTTACACATATAAGTTGAATCTTTTTTTAC TTTTCTGTTCACAATTTTGATGCATTGTGTGATTTTTTTTTAACTGTAATCCTTTGTTATGATGTAGTACTATTTTGTGT TGCTGTGAAGATGGGACAATATGGCGCTGGGATGCTGTCACAAACTCCTCGGACTAAACTATCACAAGCTAATACCAGTT TGATGTGCAAGATGTGGTTGAACATGATGCATTTAGGGTTTATCGGATTAACTATTGATTAACTTGAGTAACCAAGTTTA TTGCGTTCACCGTTTATGTATTGAAATTTTTTTTCAGTGAAAATGTTCACATGAGATGGATGTGTTACTTGATAGATGTG AAGTGTGAACCAAGTTTATTGCGTTCACCATGGATGTGTTTTTAAATTTAGTAACACATCGCTTATTTTTTATGTCAAAC GCACCCCACCCGAGGATTAGTGGGTGCTTGTTTCACTTACTTAATGTTACTCCCTCCGTTCCTATTTAACTGTCCACTTT GAGTGGAGGCACACATATTAAAGGTGTGATTAATTTTGTTGATTTTTAGAAAAAGTAAGGATTATTTTTCTATTTTACCT TTTAAAGTATATGTTATCTCTCCT
CDS sequence (LotjaGi3g1v0235600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAAGTTATCAGCTTTGGGATGTGAACCAGTGACTGGTAACCCGCTTGCTCCGAAGAAAAGAGACTATAAAGTCAC CAATCGCCTCCAAGAGGGGAAGCGTCCTCTATACGCCGTCGTTTTCAACTTCATCGACTCCCGCTACGTCAACGTTTTCG CCACTGTTGGTGGCAATAGGGTTACCATTTATCAATGTCTTGAAGGAGGTGTTATTGCTGTTCTGCAGTCTTATGTAGAT GAAGATAAGGATGAATCTTTTTACACTGTAAGCTGGGCATGCAGTGTTGATGGTAACCCATTTGTTGTTGCTGGAGGAAT CAATGGTATAATCCGAGTCATTGATACTGGCAGTGAGAAGATACACAAGAGTTTTGTTGGCCATGGGGACTCCGTAAATG AAATCAGGACTCAAACGTTGAAGCCATCACTTGTGATATCTGCAAGCAAAGATGAATCTGTCCGGTTATGGAATGTTCAT ACTGGAGTGTGCATTTTGATATTTGCTGGAGCTGGAGGACATCGTAATGAAGTCTTAAGTGTTGATTTTCATCCGTCTGA TATGAATAAAATTGCCAGTTGTGGCATGGATAATACTGTAAAGATATGGTCTATGAAGGAGTTCTCGAGCTATGTAGAAA AATCATTCACGTGGACAGATCTTCCTTCTAAGTTTCCTACAAAATATGTGCAGTTTCCTATATTCAATGCTACAGTTCAT ACAAATTACGTTGACTGTACTAGATGGTTGGGTGATTTTGTCCTCTCAAAGAGTGTTGACAATGAAATTCTCTTGTGGGA ACCTAAAGTGAAGGAACAAACTCCAGGGGAGGGTGTAGTGGACGTCCTTCAGAGATACCCTGTTGCAGAGTGTGACATCT GGTTCATCAAGTTTTCTTGTGATTTCCATTTCAAGGAAGTTGCAATAGGCAACAGGGAAGGGAAGATTTTTGTTTGGGAA TTGCAGTCAAGTCCTCCTGTTCTTGTTTCAAGGTTGTCTCATCTTCAATCAAAATCTGTAATCAGGCAGACAGCTATGTC CTATGATGGAAGTACTATTTTGTGTTGCTGTGAAGATGGGACAATATGGCGCTGGGATGCTGTCACAAACTCCTCGGACT AA
Protein sequence (LotjaGi3g1v0235600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKLSALGCEPVTGNPLAPKKRDYKVTNRLQEGKRPLYAVVFNFIDSRYVNVFATVGGNRVTIYQCLEGGVIAVLQSYVD EDKDESFYTVSWACSVDGNPFVVAGGINGIIRVIDTGSEKIHKSFVGHGDSVNEIRTQTLKPSLVISASKDESVRLWNVH TGVCILIFAGAGGHRNEVLSVDFHPSDMNKIASCGMDNTVKIWSMKEFSSYVEKSFTWTDLPSKFPTKYVQFPIFNATVH TNYVDCTRWLGDFVLSKSVDNEILLWEPKVKEQTPGEGVVDVLQRYPVAECDIWFIKFSCDFHFKEVAIGNREGKIFVWE LQSSPPVLVSRLSHLQSKSVIRQTAMSYDGSTILCCCEDGTIWRWDAVTNSSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 371 | 366 | 3.2E-179 | – | |
| PANTHER | 6 | 371 | 366 | 3.2E-179 | – | |
| Gene3D | 24 | 369 | 346 | 1.4E-86 | ||
| SUPERFAMILY | 24 | 366 | 343 | 1.26E-44 | ||
| ProSiteProfiles | 80 | 373 | 294 | 19.723 | ||
| SMART | 83 | 115 | 33 | 90.0 | ||
| SMART | 118 | 158 | 41 | 0.0017 | ||
| Pfam | 123 | 158 | 36 | 0.042 | ||
| ProSiteProfiles | 125 | 167 | 43 | 10.776 | ||
| PRINTS | 145 | 159 | 15 | 2.6E-5 | ||
| ProSitePatterns | 145 | 159 | 15 | - | ||
| SMART | 161 | 204 | 44 | 5.3E-9 | ||
| Pfam | 164 | 204 | 41 | 5.2E-5 | ||
| ProSiteProfiles | 171 | 213 | 43 | 12.38 | ||
| PRINTS | 191 | 205 | 15 | 2.6E-5 | ||
| SMART | 230 | 267 | 38 | 21.0 | ||
| PRINTS | 254 | 268 | 15 | 2.6E-5 | ||
| SMART | 279 | 320 | 42 | 330.0 | ||
| SMART | 325 | 366 | 42 | 0.52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0235600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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