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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0237000 |
| Transcript ID | LotjaGi3g1v0237000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DDRGK domain-containing protein 1; TAIR: AT4G27120.1 DDRGK domain protein; Swiss-Prot: sp|Q94C53|DDRGK_ARATH DDRGK domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9UMM9|A0A0L9UMM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0237000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37969047..37973295) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAGGGACATAACGACGTCGTTTCATCCGATGAATATCATCCAAAACGTGAAAGTAAAACCGTGATGATCATCTCTA TTCGCAGCGAAATCCATTTCGTGAGAAACCACCGAACAAGCCAGGAAAAACTGGAGCACCATTTGCATCAATGGAGGAAC TACTCGTAGCTGTACTCTCGATTCTCCTGCTGGGAGCACTGATCCCACTCTATCTATGGAAGCGTCGTCAGGATTCTCAA CCCTCCGCTCACCACGACGAACCTCAACAGGTTTGCAACCTTCACTTTTCCCCTCATCTCGCCGCCAAAACCCTAATGAC ACCATTCTTAGATCAATTTAACAAATTCGGCAGGCTCCACGCAGGGAAACTGTGGTGCGCGCCACCGCAACTCGCCGCAT GCGTCGGAGACCGGCGGCGTCTGGAGCTAGCACTTCTTCAGATCCACCTGCAGCGCTTCAAGGTTTCTCGCATAACTCGT TGATTTTAATTCAATTTTTTTTCATGTGCGTAGAAACTTTTGCGTTTTGGTGATGATTATGCATCACTGTGTTACATTAG ATGCGTATGCACTTTGTTGTAAATTGTTTGCGGTAGAATTTCATCCTTTGGGGTCAAATATTTGGCAATGTTATTTATTT GGCGTACTGTTTTTGTTATGTGGAAATATTGTTAGATCTTTGTTTGTTTGGTGATATGAAATGGAAGCATGATAAGTGCA CTGCTGTGTTTGAACTTGGAAGGATGTATAAAGTTGATTATGAAACTGAGTTGCATTTTTTTGAAGTGATCAACTGTTTG TATACGTTTGAACAGATTCGGCAGGTGAAAGCGATGATGAAGCTGGTGGTGGCGAGTCTTATGAGGCTAGAGCATCAAAG AAAAAAGAAATGAAAAGGCAAGAGAGGGAAGCTCGGCGACAGGTATTCTTTCTTTATAACATGTTTAAAACTGATTCAAT TCATTTCTCAGTAATTAAAGATACCTGGATGTACTTTTGGCTAACATTTTGTTATTCACAGCATGGCTTGTTACTTACTG TTCCAAAAGGCAAAGTCATTTGAATTTGACTTACCAAAAAGGAGGGTTTCTAGATGTCAAGGATGTTGTGCGTTTTTAAA GCTTGAATTTGGATACTGATGTTTTTAATTTGTATATAATTCTCAAGCTAATGTCTTAAACTGTTGAGTATATGATAGAA GGGCTTTGAAGAATACTAGTCAGACTTAACATTTAGATATGGGTGACAAATGTATTAGTCTGAACACCCTCCCCTCAGTA TTTTTATGTATTCCTTGAATTCTGGTGCCTAGGTTTTAGTTTTTACTCCCCACCCCCTCCCCGCGGGGTTTCGATGTTGA TTGAAGTTTGAGTAGTTATTTAATCCTGGTGTATCTTTTTGGAAGGCTGAAGAAGCTGCGCGAGAGTCAAGGAATTCAAA GCAAGACCGCTATGCAGAAATGCGAAGGTTGAAGGATGAAGAGCGCGAGGCGCAGGAGCGCATGTTGGTGAGTTAACAAC ACAACCTTATTCTGATTTGGTTTCAGGATTTAATTTCTCATGGTATATCAATCGGCAAAGTACATGCTTCCTCATGGTTA ATACAGGAAGAGGAGGCCAAGGCTCGGAAGGCCAAGGAGGAGGAAGCAGCTGCATTAGAGTTTGACAAGTGGAAAGGGGA ATTTTCAGTTGATGATGAAGGTACCCTTGAAGATGTGCAGGAAAAGACTGAAGACTTGCTATCCAATTTTGTAGAATATA TCAAGGTTACTCTACAATCTTACTTTCCTTCAGTTCTCCTTACTAAATTTTGAGAAAAGTTAAATATTTCTTTAGGGCAT CAATAGATTCAAAACCTTATCTCAACTAGCTAGAGTTATAAATGTTTGCTTTTGAGATGTTTTATAACCATTCTAATTTA CATTTAATATTTTTTAAATCATTCAGAAACACAAATGTGTTCCCTTAGAGGACCTTGCTGCAGAATTTAAATTGCGCACT CAGGTATTCTATCCCTTTAAACCCATTGACTCCCTCCATCACAACCTTTTCTTGTATTGGTTGTTGCTATATATTTCATT CGAGGAGCAATATAAATGAGCTTATAGGTAAAGATGGGTAATGGAGAAATTTAATTAATATAGTTGATAACAATAATAAA ATTAAGAAGCTATGAGATAAGTTCGTTTACACCCTTGCTTTGGTCAAATGAGCTTATAAGCTAGTCAAATATATTTTAAG CTAGCTTAAATGTATTATCAAACACACTCATTGGAGTACAGCACTAATACAGGTGAATACCGTAGACCAAATGGAGGGCA CTCTAATGGTGGGAGGTCAAACCATTGCGAGATCTAGTTTAAAAGGGTTTATCATTAGAAATGTTTCATGACTAGATATT ATAGTGTTGTAGTTAATCGCACCTAGTGAGAAAAGGCTTTGGTGGTTTTTTTTTTTTTCCAGAGAAAGGTTACAGGTATC TTAAGTTGAGTTACAGTGCTATGCTCAGCTTGTATTTAGGGTTTAGGGTGTTAAACCAGCTGGTCAAATCCTTTTCTAAT GTTTCTATGTAGTGAAGCCTTAATTACTTACTTTGTTGGGGGTTCTATATCATTGTATTTAAGTATGAATTGAACTGTTA TATGAGTTGTAGTTTTTGTCAATGGCCTTCCCTTCTTATGACACACTAAACTGATGCAGGAATGTATCAATCGCATCACA TCTCTGGAAAGCATGGGTAAGAGCCTTTCTTTTAGATCTATTACCCTTCCTGTTTTATATTTTTCTTATTTTTGTCTTCT TCATCACCAACCCTGTGTTGGGATCTAGATAGCCAATTTACATTGTTAGATGGCCAAGTCATTGGCAAGGTTTTCAATAA ATGGAAGAAATATTTGACTCAGTTGGGAAGCCTCATATCTTTTATGCTTTATACCCCATTGTCACAACTCACAAGCTATG GGCTGTCCCTTGCCCGGGTCTGCCCTTATATCAGAACCTTCCTACAAAGAACGGCTAGGCATAATTTTAAATAGCACATC CCACTTTATGTTACTCAATTTACCATATTTTTAACCAACAGTATGTTTTTTTTTTCCCTTGTGCGATCAAGGAGCATACA TTACAATATACTGTGTCAAAGTTACTGTGTTAGGAGTTCTCTGATGATTTTCATCATTAAATGGCCAATTGTAATTTATG TTGATTTTACTTTAGTTTTGGCATAGTTGCCTTCTGACCTTGTCATCTGATAAATTTATATTCTGCATTTTCCTCCTAAA GAGTCTGTATAACTACAAATTCATTTCATAGAAGGTTTTTTTTAATGTTTGGAAAACAATTGAAATGATGCTTCTTTTTA TAGACTTCAATCTCTAATCATTACTTGCTGGAGCTTATAATCAGCACTGCTGCTGCTTCCCCTTAGTTTTGCTTGTTGCT TTGAAACAGTAATTTCTCTTTGATGACCCATCTTACTGTTCTGGAGAGATCAATATTTTTGCCAGGATTACCATGATGAT TTTGTAATGTAGTTGCAGCCTGACAAAATTAAAATTGTTATACTCCTGAAATGTTATTGGCTTTTTAAAGACTATAATGT CATATTCTTGTGTTTCATCTATTCCTGCTGACGGATATAATAGTAAGTTCATTTATGCATCAGGTCGGCTTTCGGGTGTC ATGGATGATAGGGGCAAATTTATATACATCTCACAAGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGGCAAGGGAG GGTTAGCATTTCCCACTTAGCTAGTAAATCAAACCAGTTCATTGATTTGGAGCCAAAAGTTGAATACACTGAGGACATAA GTAATGTGGAGGAGATAACTGTCAGCTGACAAGGTTTTTTTGACTGAAAATCCCGTGGTGTACATAAGAAAAAGAATGGC AGTTATCTGATTTGTCTAAGATTTGGTTCAACACTTTTTGTTAACAACTTTTGTATGTAACTGCAATTTCAGATTTTACC TGCAAATGCATTTTCCTGCCGAAATTAGTATTGAAAGAGAATGTATTAATTGGAAATTCAGTTGAAAATTTTCCATGCAA CAAATAGCGCTCACACTTGAATCTTCTGTTACTTTTATGACTAGCACAATCTTTTTCGGTATATTTAAGTATCCCACAAT GTCTAATTGCAAAGAAAAAATGTACTCCCTTACAAATATATATTCTGTAAAAAATGACAACATGGAAAAGGCGCCTTTTC CTTGACTAA
CDS sequence (LotjaGi3g1v0237000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAACTACTCGTAGCTGTACTCTCGATTCTCCTGCTGGGAGCACTGATCCCACTCTATCTATGGAAGCGTCGTCA GGATTCTCAACCCTCCGCTCACCACGACGAACCTCAACAGGCTCCACGCAGGGAAACTGTGGTGCGCGCCACCGCAACTC GCCGCATGCGTCGGAGACCGGCGGCGTCTGGAGCTAGCACTTCTTCAGATCCACCTGCAGCGCTTCAAGATTCGGCAGGT GAAAGCGATGATGAAGCTGGTGGTGGCGAGTCTTATGAGGCTAGAGCATCAAAGAAAAAAGAAATGAAAAGGCAAGAGAG GGAAGCTCGGCGACAGGCTGAAGAAGCTGCGCGAGAGTCAAGGAATTCAAAGCAAGACCGCTATGCAGAAATGCGAAGGT TGAAGGATGAAGAGCGCGAGGCGCAGGAGCGCATGTTGGAAGAGGAGGCCAAGGCTCGGAAGGCCAAGGAGGAGGAAGCA GCTGCATTAGAGTTTGACAAGTGGAAAGGGGAATTTTCAGTTGATGATGAAGGTACCCTTGAAGATGTGCAGGAAAAGAC TGAAGACTTGCTATCCAATTTTGTAGAATATATCAAGAAACACAAATGTGTTCCCTTAGAGGACCTTGCTGCAGAATTTA AATTGCGCACTCAGGAATGTATCAATCGCATCACATCTCTGGAAAGCATGGGTCGGCTTTCGGGTGTCATGGATGATAGG GGCAAATTTATATACATCTCACAAGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGGCAAGGGAGGGTTAGCATTTC CCACTTAGCTAGTAAATCAAACCAGTTCATTGATTTGGAGCCAAAAGTTGAATACACTGAGGACATAAGTAATGTGGAGG AGATAACTGTCAGCTGA
Protein sequence (LotjaGi3g1v0237000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEELLVAVLSILLLGALIPLYLWKRRQDSQPSAHHDEPQQAPRRETVVRATATRRMRRRPAASGASTSSDPPAALQDSAG ESDDEAGGGESYEARASKKKEMKRQEREARRQAEEAARESRNSKQDRYAEMRRLKDEEREAQERMLEEEAKARKAKEEEA AALEFDKWKGEFSVDDEGTLEDVQEKTEDLLSNFVEYIKKHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDR GKFIYISQEEMKAVADYIKRQGRVSISHLASKSNQFIDLEPKVEYTEDISNVEEITVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| TMHMM | 4 | 23 | 20 | - | – | |
| Phobius | 6 | 23 | 18 | - | – | |
| Phobius | 24 | 298 | 275 | - | – | |
| MobiDBLite | 30 | 130 | 101 | - | – | |
| MobiDBLite | 30 | 52 | 23 | - | – | |
| MobiDBLite | 88 | 130 | 43 | - | – | |
| SMART | 93 | 278 | 186 | 5.2E-85 | ||
| Coils | 95 | 166 | 72 | - | – | |
| Pfam | 97 | 277 | 181 | 3.2E-52 | ||
| SUPERFAMILY | 185 | 254 | 70 | 1.7E-25 | ||
| Gene3D | 189 | 246 | 58 | 7.0E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0237000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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