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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0237400 |
| Transcript ID | LotjaGi3g1v0237400.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15; TrEMBL-Plants: tr|A0A151RDM2|A0A151RDM2_CAJCA TBC1 domain family member 15; Found in the gene: LotjaGi3g1v0237400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38078421..38086283) extracted from Lotus japonicus Gifu genome v1.2.
AACTGCAATTGCAAATCTATATAGTAAAAGATCAAGTAACTGAAAAAAATCTATCTAATGGAAATGGCAAAGTGACTCTC ATCTAGAATTACAAATCCTAATTCATGAAAGAGAAACATAGAAAAAGTGAAAAACACAAGTTTGTGTACTATGTCTATAT GCAATAAGGTTTCGTGAGAATTTATGAGTCTTCTCTTCTATTCCACCTCGTGACAGGGCATTACTACCTTCCTCCACACC ATCCCCACTACGTACGGCACTACCAACCCCACAACGCCGCAGATGCTAACAACTAATCATTATTACACACAAAATTGTTA AAAAAATATTTTTTTTATTGTTCTCTGTAACTCTTTCAAGCTGGGTCACCTTTGATTTCTTCAATTCACAAGTTTTTGTA TCTGGGTCTTGTTGATCTTTTCAAAGAGGTTCAGCTTTTAGGTGCTGGCAAGGTTGTTTGATACTAAAAATCTTTGCTTT TTGGTTTGTTGGTGTTTTTCTTGAGAGCTCTTCTGGCTTTTTGTTGTGGGGTTGGGATGTGGAGAGATCCAGGAGTTCCT GCTGATTCTTTCTATGAAATTCGCCCTGAGTGCACTGATGTTCCCATTTCTCGATTTAAGATCAAGGTCTGTTTTCTTTC CCCCCAGTATTTTTTTTCCACTATGGAGTGTCCTAATCTGAGAATCTTTGTTCATAGATGAACATAATGAGCATTGGTAG AAATTGGTATTGGTCAATGCATAATAATATGAGGTTCTGTTTGGTCATTTGAGGATGTTAGTGTATTTTTTTTTTTCCTT TTTAATCTGGCTTGTCTGTCTTTCTAAGGTAAATTGTATTGAGCTTAACAAGTGGAAGGGACTTTTGTTCATTTGGGGAT AGGTTGATTTTGGATAATTGAAAATCATTTATGAGTGATCTGAAATGTGTTGTTGACCTTTACAGAGTTGACAATGATGT GTTTTAGTGATGCTCCTTTATTGAAGGAATAAAGTATTTTGAGCTTTTAGGATCTTCTATTTCTTGCTTCTTGTGAATTT CAAATCCAGTAATGTCATATCATGTATCACTTTTAATCAATAAAGTTTGATTCACTGAGAGGAGTTTATTGTACAGAAAT TACTGTATCATGAATGCCAAATTGAATGTAGTTTCGTTTCTAAATTATATGATTGTCCACATTATTTTGGATCAAATCCT GATTCTTATGGTAGATGCATGAAATAGGGGCACTTAGGTTTTAATTTATCTCGTGGAACTTGATTAAGTAAAACACTTGT TGTATTAATTATTAAGATTTGTTTGTATTTCACTATGTCTTGACTATACAATGGCATATAGGCTGTTATGAATTGGTTGA TTGCTTCATTTTGGAAAAGTTTAAAACTTTTAAGAGAACTAAATCTGAATATGGATAAAATACACTTGGTAATTAGCCAA GGATCATGACAAATACTAAATGATTAATTTTCCTTGTGGGGTTTCTATCTTATGAGACAAACATAAATCAATTAGATGAT CCGACTCCTCAATACAAAAATCTTGTGCCTTCTTCATCTTGAAAATTTTACATTTATTTGGATTTCCGATTTTGTAATAC GTATATACTGTATTTTTATTTTTAACTTCTTTTATTATGTGGTCCAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCAT GCTGCATTTACTACAGAAGGGTATCTGGATATAGGCAAGACTCTGCGCCGAATCTACAGAGGGGTAATTGCTTTTTTATC ATAATAATGCTGGTTCAATTCACTTGAACATGTCCATGCATGACTACATGCTCATTTAAAAATGACAGATGGTAGTCATG GAAAGTTCTCCTAGTGATCATTTTCTTCATAAGTAATATTTTTTCTTCATGATGATGAGTAATGGATGTGCCGTGCTGAT TATTGTTTTATGATGCCTCTAAATTTTATTCAAGATTATGGTTTTCTTGTGTGGGCAAGTGTAGAAAGACAAGTATTTGT TTGTAAATGTGATTGTGAGTTGATGGATACTTTATTGAAGCTTTTGAATAGGGAGTTCATCCATCAATTAGGGGAGAAGT TTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGAAGGTAAT CAATCTTCCCATTTTATAGATTTTTATTTTGTTCGATAACTATTCTGTTTTTACTCCCTTGTTACCCTCACAGGTCAGAG CATTGTAGAGCATTTAAAATTTTTATGACGTTGAATTTTGTCGCTGCCTTAGTTTTCCTATTAAATAAAAATGCCACGTC CTTAAAAAATAAAGGAGGAATTGCTTCCACATCCTTTATATAAGGATAAAACAAGGGAAATTACATAGTACTTCTGTAAT TTTATAACTGCTGTTTCTGAACTCTAAATCTAATATATCATTACTTGAATATCACTTATGTTTTTGTCATCAGGATGCAA TATGCTACGTGGAAGGAAGAATGCCGCCAACTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACAGCACCTGTTATTAG TGAAGATGGTCAGCCAATTCAAGAGCCATTGGTTCTATCAGAAACAAATTCAGCCGAGGGATTGGCTGTTCTTCCTCAAG ATAATAATTGGCCTTCAAGTTTAAATGCTGCAAGTAATGTAGAAACAGTGGCGGACAAGAGAGTAGTCCAGTGGTTGTTA ACTCTCCATCAAATAGGTTCGTGAATTTCTTTTCGTGCAGTGTCTATTATATATCGGCTATGGTATGTTAGTTATTTCAT AGGCATATAAGTATTAGGTGAAATCCTGCTCCAGAATTATTTTGTTCATAAATCTGTTATGCCTGAATGTTTAGTTGTAC AAATGCAATTTGATTTATATGGCATGACATAGTTGGCTTTGACTTTGATTTCCTTAAATGGGTAGTAATTTATTGTTATC TTTTGAAGTATTATCATGTAGTAAAATAAAATCCCATCATAATAGATGTCATAGTATAATCCACATGGTGTGTGAATGAC CGTTTTCTTGGACATAACAAATTTCAGGTCTTGATGTGGTTCGCACTGATAGGACGTTGGTTTTTTATGAGAAGCAAGAA AACTTGGCGAAACTATGGGATGTTCTTGCACTTTATGCTTGGATAGATAAAGATGTCGGCTACGGTCAAGGTGGGTTTTT AATGTATATTACATGTTTGGTCTCTTTGGATAATTGGATATAGACCGGTACTATATTTTTTTGAATTCTGAGATCTTAAC TTCATACATTTGGTAATTCCATGTATGTATTTGCGCTATTCTGTAATATATTTGGCTAGTTGTTGACCCTAATGTTAACC TAACAACCCTGGCATTAAAAGGAAAGCCAATATTCATAGAATATTTAATGTATGGTACCTTGTTATGTTCAAGTATTTTT GGGGTTTGAAACCACATAACAGCACCTTCATATTTATTTAATCACTCTTTTTAAGTGTTCGGTCAAATTAAGACCTCTAA ATTAATTTTCATTGAAGAAAAATGAACTGTGTAGAGAAATCTGAACCTTGAGAGAAGAAAACACCAATTAGGTTAATGGA TTTATCTATAAAAGAAGAATATATATGATAGGATTTACTCGTTTATGTACTAGTTGTCCAGTTCTACTTTTTTTCCGTGC AATCTTGCATGAAATAATTGCAACCACCATTTGCAATTAATTTAAGCTTCATGTTTTAACATCTTACAATTCTGAACAGG AATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGC GCAGACTTGTAAACATCTCATCTCTATGCTCTATTGGATTATTAAATTCTTTATAGCACATTTTTTCATGAAAATATTTC TTTTAAGAATTAGTAAAAAAATCTAATGTTTGGTTATTCGAGTTTCCTCTTTCTTTTTTACAGGGTTTTTTGTTTATATT CCTAGTTTGCTTCTCCCTGATTTTACTCTCAATTAACTCTCGTTTAAGTTGCACAATGCATATGGGTTTGTTAAGATGTC CATTCATTATGATATTGAAACTAATTACAATTTCCTTTATTTATTGTTAGAAATATAATATAAAACCATTCGGAGTCCCT TACCCAAGAGCTTTAGCTTTTGGGACAATTGGTTCATGGCATGGTATCAAAGCCTCTATGACCAATTGGTCTAGAATTTG ATCCTTGTTGCCCCCATTATTCTAATAAAAAAGGTTGAATATCAGCACATGGTTTGTGGGCTTGTGCATTGTCCGCACTT CAAGCTCAAGTTGGCTCTTGCGTGAGGGGTGTGCTAGAAATATAATATAAAACCATTCAGGGTCCTTTACCCAATATAAC AAAATTATGCTGATTGGAAAGATGGACTTCTGTGTAGAAAATTACGAGTGAGCTTATAATGTATTTGTATAGCTAGAGAA ATGATAAAACATATCTTGAGCCTTCATCTAACAACTTATTTAGGAGAATTGGTTATTGACATGATGGTATTAGAGGGGAA GAACGTCCATGACTTAGTGTTGAACAGTTCATCTTTGTCCCCTATTATTCCAAATAAGCATTGAGGTGTGTTATGGGTGT AATAAAGCCATTCTTGCGCCTTCACATAGAAGCATAAGTATTTAGGAGGGTTAAGATAAGTTTGGTTATCCATTTGCACT TACGCAAACAGACTTCACATGCACTTCAAGAAAAAAAAGTGAACTGAACTCTCGCGAAATGAGTTGAAAGTCCGTTCACA TTGTACTCATATGGGATCCAAAGACACACTTTGTCATTGATGGTAGTTGTTTGAAATTTTATTCAACAAGTTGGCGCACA AGCATTCTTGGTGAACAGTGAACTCTACACTTAACTGCTATAATTTTTTTTCATATATATTACAAATTTTATTAATAGTA TTTCAGACTTTCAGCTTTATCTCAATTTCTCACTATCTATATTCTTGACTTTTCAAAGCGAGGAAATTTCAGATGCACTA ATAACTCTGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCACAAACAT TTAGGTATTTTCTTACATACTTTCGCTGTATTTTATTTGTCAAATATGGAATAAAATTTTCTGATTTTAATTGTATGGTT TGGTTGTGATTGTTGTTTTAAGAAATGATGATTGTGAGAAATTATTAATGGAAACTGGTTTGTTCACTGTTATCTTGTGA TTTGAAGTTGTTAAATAAACCCCCTCTCTTTTCTTTATTAACATTTCATATAATGTTTGAGAGATGATAAATAACAATGT GCTGTCTTCTCATTTTGGAGCATAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTT TCGTCGGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGGTGTGTTTGGATTCTCTATTTGTGATATATTCTATTA CATTTATTGAACAAAGGAACATTAATTTACTCTCTGAGTATAGTAGTTGTTCTCTCAGTATGGATATGATTTTCAATTCT GTTTTGCTATTAATCATTATTCTTTCAGATTGTTAACATTACTTTATATTAAAAGTTATTGGGTCAAATTATTGATAATA TATTTATAGTATCTTCTGTTTGCTAGATGAGTTTGCATTGTTCCCTTTGTGTTAATATAATATATGTACGGTGTGTGTGT GTGTAATATTTTTCCTCATGGAAACAGTTTATGGAATCATATTTCCTTTCTTTTTCTATTTGCAAGGGAGTATCTTGGGA ATCTTTGTAAAATGATGATTGATAACTAATAGCTTGAAATGTTTACCAGATGATGTGGGCTCTAGAATATGATCCTGACT TGTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATCAA TGCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGC TGCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGGTTAGTCTTG TGACATTCAAGTTTAAGTTCAAGAAAAGGAAAAATTGCTTTGATACAAAAGGAATGAAATTATTTTTCCGTACTTAGTGA ACAAGCTGTGACAAGGTTGCATTTGTTTCATAATGAAAGTTGTGTCTTAAGACATTATATTCCTTAACAAGTTTTGCTTT GCTTTTTGTATCTGTTTAATTCCTTCTTTGCACCTTGGATATGAATTTTCTCAGATATTGAATGACACAACTGGAAATCT AGATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAAAGGTAGTGTTTCTCTACTATGCCA TTTACCCTCTTTTCATATCCTCATATTTCCATATAATGGGAGGAAAAGCAAACAAAATCATAGGTAAACTACCATGCTAG AAGGTACATGCTAGTGCCTAGTGTCACTGTTAAAATTTGAAAATCAATTGCCATTAACTCTCTAGAGTTTGTCATTTTCG GTGTGTATGCCATGAACTTTGATTAGTTTGAGACCTCATCATATTCTCCAATACATTAGACTGGTTATCTATAATATCTT TTTTCCAAGTTCTAATCATTGATCTTTTAATTACAGTGATCAGGATGCAAAACATGAAAATGTTTTTTTTTTTCCCATTT CATTATCTTGCCTTGCATCTATCTCAACATTTCCTTTCTTAAATTATTCTTTGTTTTTATTTTTGCTCTCTTATAGTTAC TATGGCTGTTCTAGTCATACCATTTGAATCTGTGCATATTAACCTGTGTGACCAAATCATCACTCATTGCACAAGAAGGA AGCAAAAGAATAACTGATCTCATCATGATGCATCTTTCCTTCGATCCCTCTACTTCCAAAATACATATATGAATATGGTT GTGTTTGGTTACATCCTTGAAGGGGAAAAGCACTGCTGCTTTAGCATAGATCAATACAATAATTTTTTTGAACAAAATAT GTGATGTCTCTCTATTTTGGTAACTCCTGCTCATGTCTCCCTTTGTTAATCATAGTGTCCTTATTTGTGAGAGTGTGTAT GCATTCCTGTTCTTTTTTTCCTATTTCCAGTATAATATCATTTGTTAATCTCCTATCTATACACGTGATTTTGTAATTTC TGCAGGCCAAGAAACAATAGCACCAAATCTATCCTACGTTAACTTCTTTTGTGCTGATCAAATCATGTGTTACTTCCTGC CTGCTATTATTTTATGCATTGGAGACAATAAAGGAGTCTATCAAATTGGGAATGGAGTTTGCAGAATATAAAATAGGGAT TTATCCAAACTTCACTCCCTGAGAGGCTGTTGTACGTGAAATTAGTTTCATTATTTTCTTGTGTATCCAAAAGAACAAAT GAGATTGTATAGGAAAATAGATTTTTTGTATAACAATTTGTACTACGTAATATTGCATTGTAAAATGGGGGGAAAATGGT ATAGGAAACAGCCACCCATGCTAATGAGATTGATTTTGATCTTTATTTCTTGCCTTCCTTGTCCTTTTCTCTCTAATCAT TAAGTAATGTAATGTTGCTGAGGTTCTTTTCTAAAAAAATTGTTACATCCAATAAAATTTTGAGCTATTCAAAATAACCT TTGCAATTGGTTGATTATTAACCCTTTAGTTTTTACTGATGTTTGAATTTGTTGAAAAATAAGCTTGAGTTAAATAATCA TCCCACCAACCTTTTAATATTCC
CDS sequence (LotjaGi3g1v0237400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGAGATCCAGGAGTTCCTGCTGATTCTTTCTATGAAATTCGCCCTGAGTGCACTGATGTTCCCATTTCTCGATT TAAGATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCTGCATTTACTACAGAAGGGTATCTGGATATAGGCA AGACTCTGCGCCGAATCTACAGAGGGGGAGTTCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTAT GATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGAAGGATGCAATATGCTACGTGGAAGGAAGAATG CCGCCAACTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACAGCACCTGTTATTAGTGAAGATGGTCAGCCAATTCAAG AGCCATTGGTTCTATCAGAAACAAATTCAGCCGAGGGATTGGCTGTTCTTCCTCAAGATAATAATTGGCCTTCAAGTTTA AATGCTGCAAGTAATGTAGAAACAGTGGCGGACAAGAGAGTAGTCCAGTGGTTGTTAACTCTCCATCAAATAGGTCTTGA TGTGGTTCGCACTGATAGGACGTTGGTTTTTTATGAGAAGCAAGAAAACTTGGCGAAACTATGGGATGTTCTTGCACTTT ATGCTTGGATAGATAAAGATGTCGGCTACGGTCAAGGAATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGAT GAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCGCAGACTTCGAGGAAATTTCAGATGCACTAATAACTCTGTTGG GGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTG GTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGGGAATTCTCCTTTTGTGATTCATTGTTC CTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACTTGTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAA AACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATCAATGCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAA AGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGCTGCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCAT GAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAATGACACAACTGGAAATCTAGATGCCAAAAAGGCTTGCTCTGG GGCTATGAAACTTCACAAGAAATACTTGAGAAAGGCCAAGAAACAATAG
Protein sequence (LotjaGi3g1v0237400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRDPGVPADSFYEIRPECTDVPISRFKIKAGKTLSARKWHAAFTTEGYLDIGKTLRRIYRGGVHPSIRGEVWEFLLGCY DPKSTFEERDQIRQRRRMQYATWKEECRQLFPLVGSGRFITAPVISEDGQPIQEPLVLSETNSAEGLAVLPQDNNWPSSL NAASNVETVADKRVVQWLLTLHQIGLDVVRTDRTLVFYEKQENLAKLWDVLALYAWIDKDVGYGQGMSDLCSPMIILLDD EADAFWCFERLMRRLRGNFRCTNNSVGVEAQLSNLASITQVIDPKLHKHLEHLGGGGYLFAFRMLMVLFRREFSFCDSLF LWEMMWALEYDPDLFLMYEEPQSATKKTEGPKGKAKSIHQCGKYERANMRNGTKNSEAPLPISIFLAASVLKDKSAELLH EARGLDDVVKILNDTTGNLDAKKACSGAMKLHKKYLRKAKKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 440 | 439 | 1.4E-208 | – | |
| PANTHER | 2 | 440 | 439 | 1.4E-208 | – | |
| SUPERFAMILY | 39 | 289 | 251 | 1.09E-50 | ||
| SMART | 60 | 352 | 293 | 5.4E-32 | ||
| ProSiteProfiles | 63 | 329 | 267 | 34.62 | ||
| Gene3D | 151 | 253 | 103 | 5.0E-15 | – | |
| Pfam | 178 | 326 | 149 | 1.1E-33 | ||
| SUPERFAMILY | 267 | 435 | 169 | 2.88E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0237400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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