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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0237400 |
| Transcript ID | LotjaGi3g1v0237400.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TBC1 domain family member; TAIR: AT4G27100.2 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|G7IJN4|G7IJN4_MEDTR Ypt/Rab-GAP domain of gyp1p superfamily protein; Found in the gene: LotjaGi3g1v0237400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38079741..38082522) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCG CAGACTTGTAAACATCTCATCTCTATGCTCTATTGGATTATTAAATTCTTTATAGCACATTTTTTCATGAAAATATTTCT TTTAAGAATTAGTAAAAAAATCTAATGTTTGGTTATTCGAGTTTCCTCTTTCTTTTTTACAGGGTTTTTTGTTTATATTC CTAGTTTGCTTCTCCCTGATTTTACTCTCAATTAACTCTCGTTTAAGTTGCACAATGCATATGGGTTTGTTAAGATGTCC ATTCATTATGATATTGAAACTAATTACAATTTCCTTTATTTATTGTTAGAAATATAATATAAAACCATTCGGAGTCCCTT ACCCAAGAGCTTTAGCTTTTGGGACAATTGGTTCATGGCATGGTATCAAAGCCTCTATGACCAATTGGTCTAGAATTTGA TCCTTGTTGCCCCCATTATTCTAATAAAAAAGGTTGAATATCAGCACATGGTTTGTGGGCTTGTGCATTGTCCGCACTTC AAGCTCAAGTTGGCTCTTGCGTGAGGGGTGTGCTAGAAATATAATATAAAACCATTCAGGGTCCTTTACCCAATATAACA AAATTATGCTGATTGGAAAGATGGACTTCTGTGTAGAAAATTACGAGTGAGCTTATAATGTATTTGTATAGCTAGAGAAA TGATAAAACATATCTTGAGCCTTCATCTAACAACTTATTTAGGAGAATTGGTTATTGACATGATGGTATTAGAGGGGAAG AACGTCCATGACTTAGTGTTGAACAGTTCATCTTTGTCCCCTATTATTCCAAATAAGCATTGAGGTGTGTTATGGGTGTA ATAAAGCCATTCTTGCGCCTTCACATAGAAGCATAAGTATTTAGGAGGGTTAAGATAAGTTTGGTTATCCATTTGCACTT ACGCAAACAGACTTCACATGCACTTCAAGAAAAAAAAGTGAACTGAACTCTCGCGAAATGAGTTGAAAGTCCGTTCACAT TGTACTCATATGGGATCCAAAGACACACTTTGTCATTGATGGTAGTTGTTTGAAATTTTATTCAACAAGTTGGCGCACAA GCATTCTTGGTGAACAGTGAACTCTACACTTAACTGCTATAATTTTTTTTCATATATATTACAAATTTTATTAATAGTAT TTCAGACTTTCAGCTTTATCTCAATTTCTCACTATCTATATTCTTGACTTTTCAAAGCGAGGAAATTTCAGATGCACTAA TAACTCTGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAATTGATCCAAAACTTCACAAACATT TAGGTATTTTCTTACATACTTTCGCTGTATTTTATTTGTCAAATATGGAATAAAATTTTCTGATTTTAATTGTATGGTTT GGTTGTGATTGTTGTTTTAAGAAATGATGATTGTGAGAAATTATTAATGGAAACTGGTTTGTTCACTGTTATCTTGTGAT TTGAAGTTGTTAAATAAACCCCCTCTCTTTTCTTTATTAACATTTCATATAATGTTTGAGAGATGATAAATAACAATGTG CTGTCTTCTCATTTTGGAGCATAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATGGTTCTGTTT CGTCGGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGGTGTGTTTGGATTCTCTATTTGTGATATATTCTATTAC ATTTATTGAACAAAGGAACATTAATTTACTCTCTGAGTATAGTAGTTGTTCTCTCAGTATGGATATGATTTTCAATTCTG TTTTGCTATTAATCATTATTCTTTCAGATTGTTAACATTACTTTATATTAAAAGTTATTGGGTCAAATTATTGATAATAT ATTTATAGTATCTTCTGTTTGCTAGATGAGTTTGCATTGTTCCCTTTGTGTTAATATAATATATGTACGGTGTGTGTGTG TGTAATATTTTTCCTCATGGAAACAGTTTATGGAATCATATTTCCTTTCTTTTTCTATTTGCAAGGGAGTATCTTGGGAA TCTTTGTAAAATGATGATTGATAACTAATAGCTTGAAATGTTTACCAGATGATGTGGGCTCTAGAATATGATCCTGACTT GTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATCAAT GCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTTGCT GCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGGTTAGTCTTGT GACATTCAAGTTTAAGTTCAAGAAAAGGAAAAATTGCTTTGATACAAAAGGAATGAAATTATTTTTCCGTACTTAGTGAA CAAGCTGTGACAAGGTTGCATTTGTTTCATAATGAAAGTTGTGTCTTAAGACATTATATTCCTTAACAAGTTTTGCTTTG CTTTTTGTATCTGTTTAATTCCTTCTTTGCACCTTGGATATGAATTTTCTCAGATATTGAATGACACAACTGGAAATCTA GATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAAAGGTAGTGTTTCTCTACTATGCCAT TTACCCTCTTTTCATATCCTCATATTTCCATATAATGGGAGGAAAAGCAAACAAAATCATAG
CDS sequence (LotjaGi3g1v0237400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACCTATGCTCCCCTATGATAATTCTTCTCGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTCTAATGCG CAGACTTCGAGGAAATTTCAGATGCACTAATAACTCTGTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTC AAGTAATTGATCCAAAACTTCACAAACATTTAGAGCATCTTGGTGGAGGTGGCTATCTGTTTGCTTTTCGGATGCTAATG GTTCTGTTTCGTCGGGAATTCTCCTTTTGTGATTCATTGTTCCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGA CTTGTTCTTGATGTATGAAGAGCCTCAATCAGCTACTAAGAAAACTGAGGGCCCTAAAGGAAAAGCAAAGTCAATACATC AATGCGGAAAGTATGAAAGAGCGAATATGAGAAATGGAACAAAGAATTCTGAAGCTCCTCTTCCTATATCTATTTTCCTT GCTGCTAGTGTGTTGAAAGATAAAAGTGCAGAACTACTTCATGAAGCGCGAGGCTTGGATGATGTTGTCAAGATATTGAA TGACACAACTGGAAATCTAGATGCCAAAAAGGCTTGCTCTGGGGCTATGAAACTTCACAAGAAATACTTGAGAAAGCAAA CAAAATCATAG
Protein sequence (LotjaGi3g1v0237400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTNNSVGVEAQLSNLASITQVIDPKLHKHLEHLGGGGYLFAFRMLM VLFRREFSFCDSLFLWEMMWALEYDPDLFLMYEEPQSATKKTEGPKGKAKSIHQCGKYERANMRNGTKNSEAPLPISIFL AASVLKDKSAELLHEARGLDDVVKILNDTTGNLDAKKACSGAMKLHKKYLRKQTKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 214 | 214 | 3.4E-101 | – | |
| PANTHER | 1 | 214 | 214 | 3.4E-101 | – | |
| Pfam | 1 | 100 | 100 | 2.6E-19 | ||
| ProSiteProfiles | 1 | 103 | 103 | 21.082 | ||
| SUPERFAMILY | 41 | 209 | 169 | 1.4E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0237400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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