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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0238600 |
| Transcript ID | LotjaGi3g1v0238600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G06400.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D; TrEMBL-Plants: tr|V7BUN9|V7BUN9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0238600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:38461115..38470211) extracted from Lotus japonicus Gifu genome v1.2.
AAAGCAGATTTCATTTTCATTGAGACGGGTTACTAAAAATATTAATAAACGGTATTCCTTCCATAATAATAGCAATAATA ATACACGGTAGCAGGCATCTGATGCAAAGAAAAAAGCGGGTAAAATAAAAAAGGCAACGAGTGCGGCGAAAACAGAGGTA GGGAGACAGCGCACTACACGATCCCCACAAATCCAGAGTGTATCCATTTTCTCAAGTCAAAATAATTTCCAATTTTACCC AACTCAAATTTCCCTCCCTCCCTCTCTCTTATTTTCCGCAACATAATAATTGTAAGAAAAAATAGTAACATCGAATCGAA TCTAATCGGTTACACACACCAACACTGAGTGAAAACAAGAAGCAAAAGAGGTGGTTCAATTCATGGGTGGGTACAGAACC GATGACGAGTACGATTACCTTTTCAAGCTGGTTCTGATCGGCGATTCTGGTGTCGGCAAGTCCAACTTGCTCTCCAGATT CACCAAGAACGAGTTCAATTTGGAGTCCAAATCCACTATCGGCGTTGAGTTCGCTACCAAGACCTTGAACGTTGATGCCA AGGTCGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAAAGGTAAAATTGAACTCTGATTTACTTATTTTGATAGTTG ATTAGAAGTTAGAAACCCTACTTGCTTTGCTGCTGTAAAAACAACACGACTCTATGTTTTCTCTGATCTTATTTCGATTT AGCTGTTTAAATTGCTTGATTACACTATATAATGTTATTTCTAAGTTTTTGTTACTTTTGCAAGGCCTATAGGGTTTTGT AGACATAAAAAAAAAGAAAATTTAGACTTGATGCTAGATGTTAATTATTGCAAATTATGATTGATAAAAGCACTTGGAAG TGCTTATCTGGAATCGGAACTTCCTTTTGGTTGGTCTCATGTAAACATTTTGGGGCACTAAAAGATTGAAGATAAAAGGT CTTAGGAAATACTTGGTTGGGAAATTTGGGCAGTATTTATATTTCTTTGAAGTATCGTTTCGTATGTTATTGCTAGAAAA ACTGTGTGTTGGTAAAACTAAAAAACCCCATATCAGTGGTAAAGAGGAGGTGCACAAGTCTTGGCTTCCTTAAGGCTTTG GGACAAACCAATAAAATAGCTCACTCACCCACAACTAAACACTTGAATTGGGTTCGCCCATGAAAATATAATATGGCATC AGAGCCTAAAAAGCCTCACACCTGATGATTGTGTCCCATATTGATGGGTAAAGAAATCTAATTAAGTAAATATAAAAAAG AGGGTGTTAAAATCCCACAAAGTAACTCACTCTCTCACTAAAGACTTGTATAGGCCCACTCATGAAAATGTAACAGTACT GATACTGATCTTTTCTACATCATTACAATTGCACTTTTTCCATCTGTTATTCTGTCAGGCACTCAGGCTAAATCTATAAG ATAGCCACCCTTTGCATGCATATATTAGAAAGGAAAAAAAATACAGACAGTTTTGAAGTGCTCAGTTGTCTTATCTAAAA ATATGCAACTACTACTAGGATCTTCTGGATGAGCTAAATCTTATACTATTTTGGGGGTTGATTTGTGATTGTGAACAATA TATTAGTACTCTAAAGCCTAACATACTATCTAGCAATTTCATTGTGTTGGTTTCTTTATGGAAATTGGATCTTGGTTATT GCATGGCAGTTGATAGTCATGGCTCGTGCTAATTTCAACTACCTGCTATCCCCTTTTCTTAGGGAAACTTCACCGAGTAG TGTCAGTTTTGTCACCCTTAATCCAGTTTCTTGGAATCCACAAATGAAGTAATTTTTTTTGACTTGCTTTATGACCTAAA TTGTCTTCATGGGGATCTTATGATCCTGATAGAAACCAGCCCAAAGAGAAGATATAAACCAATATTATTGAAGATATAAA ACTACAAAAATGCTGAGATATTTGAGAGACCCAGCTTCTCCCCAAGTCCCAATTCCCAGATGATCCAAAAGATGCTAATC CCTCTTAGCTCACTCTTATTTATAATACTGCCACACCTATACTTGAACTAACTCTCTCAACTGACTAAACTACTAACACC CTAACTAAATACTTCAACTAACTAAGAGAATTGATAACAAACTATTGGAGTACCTATGAGTACTCCGCCCCTGAACATTC ACCTTGTCTTCAAGGTGAAGAATTGAATACAAGCTACAAAATTGAACAGCTATTCCAAAGATCTAATAGTGACAATTACA GTTTCCACCTGGATCTCATTGCTGAAAGCTTAAAGTACAAGTTACTGAGAAGGGGTAATATTTCCTTCCCTGGTTCGTTT GATCACCCATTTCTTGTAGCATTACAACAATGTGTCGATTCTGCATCAGAAATTGCTCATTTGGATCTTTGTTGTCGTTT AGAGAAAAAACAACAGTGTATTTGCATGCTCCCTGTACTCTCTTAGTTTGGGGTTGACCCAGTTGTTCATCAAGTGTTTG GAGTGAATATCCTCTGCATGCTGCTCTAACTAGACTCACCCATTTTTTGTTTGCTCCATGCCGACACGCACAGGACACCT GGCTTGTTGTCCTTTCTATTGAAGATTTTAGCTTTTGCCTTCTCCCAAAGCATATTACTATTCAAGAACAGAGAAGTAGT ACATGTCTTAGTCGGTGGCTCCATCAAAAGAGAAACATCGACCACCTATGTCCTCGATGTGGAGTTCCGGAGGTGAGAGT GTCTTTCTCAAACTGCTTGGACCCTCAACCTTCAAGGGTGCAATCTGCTCGCTGCTCTTGCCCCTGTCAATACTGTCTTG ACGTGGATTTTTGGCTACTTTAGCAGCTACAACCGCATCACAGTTGGGAGGTTCCGGTGTGGCCTGTTTGGTTGACCCAT TCAACGTCGGCCACTCCTTGCTCAAGCACTTTTTCACCTTTGCTGACCCATTTTCATCCTTCTCTAATTCTACCCTAGAA TTTTGCCATTCTTTCCTATGGTTGGCACTCAACCCTTTGCTTAGAAGGAAACTTTCCAGCATCAATTCCATCCTCGACTA TTGAATGCGCTCCTCTGCTCCGTATCTCTGGTGGAGCCGGAGGTGGTTTGATCCTTGGATGCCCCGCTTGACACGCATGC CGCTCCTAATCAACCACTCCCTTGTTTTAGCGTGCAACTTCGTTTGTTGTGTCCGTTGAATTTTCCAAGATTCAGCCTAG CACGTCTTCTTGCAATCACAGTTACAAGATTGATCCTCTACATCTCTGAGGTTAAGTTTTTATCCGCCTCTGCTGCAGTC TCCAATTCCCCCCACTACGCTTCTGCGGCCTTCAATTCTCTCCTTTCTCGTTCCTTCTTTTGCCTTCTCTCATGGAGTTC TCTTATTCAATCTGTAATCCACTTTGAATCCCTCCTTTCTTGTTGTTCCTTCCATCTTCTCTCATCTTTTCTCTAATCTG CGAACTGCTTCTTCATTTCCCCAAGAAGGTCAATGATCTCCTTCTTGGCCTTTTGGTGGCCGTGAACTCATGAAATCCTC TCTTTTCTTGCCAGCCATCTCCTGGACGGTACCCGGTGCCCACAACATCTGGATTGGTTCTTTGGCACCAACAATAGAAA CCAGCCCTACATTATTCTAGAGTCCCAATATCTCTCCCTAAGTCCCAGCTCCCAAATGGTCCAAAATCTGTTAATCCCTC TTAGCTCACTCTTATTTATAAGACTCCCACCCCTACACTTGACAAACTCGCTCAACTGACTAAACTACTAACACCCTTAC TAAATCCATTAACTAAGAGAATTGCTAACAAACTATTGGAGTACCTATCAGATCCCCTTTGATTTATCTGTAAATCAATA AGGGTTTCTTTGTGGACGTTTTTGGACTGCATACTACTATTTTGAGCCTACATACTATAAAGAATTTTAACATCTCAACA ACCTGAAGTGATTACAATGTACAAACTAATGGAAAAGGAATACATGGCCTTGTTAATAAATCAGTAGTTCTTAACAAATT GTCAATATATCAGTAGCTCTATGCACAACAGCCTAATAGGCTCTGAATCTCTACTAATCATGTAACCCCCCCTCCTCCCC CCCCCCCCCCACAGTGACTCATGCTTAATAGTTAATACAACATGTGCTTATATGGTTAGGACTCTACTGATTGCTTGTTT CATGTGTATTCTTCGAACATATTTATCTAAACAATGCACTTCATTGTTCCTAGATAAATAGGGAATGTTGTTAGAGAATT TGATGTAGACAAAAATGTTGGAGACGGATAAGTGTTGAGAACACCAGGCCGAGACGTGAATTAGATTCACTATCCTCAAG AGCTCGTTCATTTATGAAAACTTTCCAGAATTTAACAGCCCGACCTGAAGTTCAATCAGGTAGATGAACTAGGGTGTCGT AATTCACAACCCAGTGTGTGTGTATATCAGTGTAACTAATCGCGGATCGCGGCAAATCGCGGCGAGGCCAAAATCCGCTA TGTCATATAGCGGATAGCGTCGCGGGCAAATAGCGGAAACCGCATAACGGTTAAAAAAAGTAAAACTTCATATAAAAAAC AGCTTGTCACAAGCTATTATTTCAAATAAAAAACTGCTACATAATGAAAATGCATGAAATAACCATTCATAACATAAAAA TATTAAAATATCCAAGGCAGTTCAAAATAACCAGTCATTGTAAACTCAACACAGTGAAAATAAAAACACAAAAGGTTCTA CTCATTATCCCCTCCTTCCTCCTCCCCAAAATGATCATTATCTTCACCATCAGAGATAGAGATATATCCTGAAGCATCAA CCTCTGAGTCCTCCAAATCAATATTCTCTATCTCTTCTTCATCCTCTTCAGCTACAACAATCTCTTTTCCTTTTGAAGAA CCTTTCTTCTTCTTCTTCTTCTTCCTTGGACCTTCAGCACTTGAGCTCTTGTTTCTTTTTTTAGTTTTCTACCTAGTTGT AATTCCATCATCTCCAAGTCCAGAAGCATCCATTACAACATCCTAAGTATGGTCATCATCTGCAAAAACCCTCTCATTTC CAACATAATCTTCATTCGCATCCATCTTCCCAACTAGCCACTCATTGCACTCATCAGTGTCGGTCAGCGAGATAGGATCC ACTAATCAAGCAATTTCCTAATTCAATGCTGGAATCTGCAGCCCAATAATCAAGCAATTTCCTAAAAAACGTTCAGGTTT CCCAGGAAATCCGTGATTTCCGCTTCCGTGTCCATCGCCGCGATTGCGTTTATCGCGGTGGCCGCGACGTCGTGGCGTAG CGATCGCGCCGGCCCTAATTTTCGCTTCGTTAACACTGGTGTATATATATATATAACTGAAGAAGAGAGAAGGAAGGTAT TTCTCTTATGGATCATGGAGTCTAAAGTGAGACTCAATATTGGGCAAGGTCCTTTAATTACAAGGTTTGGATGGTAGGGA GTTAATATGGACGGTGGACTGATGAAGATGGATGGTACAACTTTGAACGGTGATCACATTTTAATTTTATAACAAGAAAC ATGTAAGGCTCAAAAGTTCAAGATTGAAGTGGCAAAAAGCCCGTAAAATCCAAACTTCAAGCATGTCGGGCGGGGGTCAA ATTGGACGATTTGGATTAGATCTGGCAAATCTATGCCCAAACTCATGCGTGCAAGGCTGCAAGCCCAATCCTTTTACTGG CCTCTTTACCACCTCCAAGATGAATTTAGTATATAAACCATAACTAGGTCATTGACAAAGGCGATGTGTGATTTCAAAAC TTTTGAAATACGACACAAATTATGGCATATATGTATGGAACTGCCAAAACCTAGTTGCGTTAACTCAATAATTGATAGGA CTGATAGGAGGTTTATAATCTGAATCCCCAAGTACATTAAGTGATTATCACTTAAAAAGGGACAATAAAGAAAAAGATAA TTGGTTGCCCGCTTGGGTCTAATGATATGCTGGCACAACTACTCAATGACAGTCTTTAACTGAAACATTTTTCATGCAGA ATATGTTTTGCTCTGGTTATAATTTTTGAAGAAGCATATTCTCTAAAATTGGTGATTGGAGTAGTCTTTTTTTAAATGGC ATTAGGTGTTTTCATCTTAACAAACACAATTTTAACAACTCAATCATGTAACAAGTTGTAAACTGGCATTTCTTTGAGGT ATTATTCTTTGCACAGCTGAGACTGGGCCTTAACTTCTAATTTCAGATCATTTTACAAGGTTAGTTCCTTAACATCTTAG AAGGCTATAGAGGTTAACTTGAAGTTGCAATTTATGTTATGCCTCTTATCACCTTTTGGATTTTTTCTTCAAATTTATTG TTTTCAGCACACATGTGCATGCAACCATGTAGAATTGAAAATGTGTCGAAGGAATATATATATATGTGCATAACATTATA TTCACTTCAATGGACATCAGTACAATTGGCTTTGAATAAACTTTGGATCTTGCAAACCAATACGTAGGCGGTGTTTAACT GTTTGTTTATATGGTTAAGATAGTACGTTGCAGGTGATCACTTGTTTTGCATGTTAATATTTAATATTAATCTTTATCTA TAATTGTGCCAAAATAATTTACTGATTAGATATGTGGTGGAAAGTTATTTAGAGTCTGTTTGTAAAATCTTTGGTTTATT AACGTAGCAAGAGCGTGGGTTTTCAGTTGAAGTGCCTCGCAAAGAGGGATTGTTAAGAAACAAATGGGCTCTAACTGACT CTATCTTATTAATCTGAGTTCCTGATTAGTTTGAATAAGCCTTCTACAAATAATGATTGTCGCTTTAAAAATGGAACGAA GAACAAAATGGTTATAGCTTGACATATGCATCTGATGATATCAGTGTTATGAAATAGCGGTTATAACGGGTTATAACGGC GCTAAAACGGCATAGCGCCGTTATAACGTAGCGGAAAACAGGGCCGGCGCGATCGCTACGCCGCGACAAACGCAATCGCG GCCGCAAACGCCATAGCGGCGATGGACACGGAAGCGGAAATCGTGGATTTCCTGGGAAACCTGAATGTTTTTTAGGAAAT TGCTTGATTATTGGGCTGCTGATTCCAGCATTGAATTAGGAAATTGCTTGATTAGTGGATCCTATCTCACTGACCGACAC TGATGAGTGCAATAGTGGCTGGTTGGGAAGATGGATGCGAATAAAGATTATGTTGGAAATGAGAGGGTTTTTGGCTTTTT GCAGATGATGACCTTACTTAGGATGTTGTAATGGATGCTTCTGGACTTTGAGATGATGAAATTACAACTAGGCAGAAAAC TAAAAAAAGAAACAAGAGCTCAAGTGCTGAAGGTCCAAGGAAGAAGAAGAAAGGTTATTCAAAAGGAAAAGAGATTGTTG TAGCTGAAGAGGATGAAGAAGAGATAGAGAATATTGATTTGGAGGACTCAGAGGTTGATGCTTCAGGATATATCTCTATC TCTGATGGTGAAGATAATGATCATTTTAAGGAGAAGGAAGGAGGGGATAATGAGTAGAACCTTTTGTGTTTTTATTTTCA CTGTGTTGAGTTTACAATGACTGGTTATTTTGAACTGCCTTGAATATTTTAATATTTTTATGTTATGAATGGTTATTTCA TGCATTTCATTACATGTCTTGTTTTTATTTTTATGTAGCAGTTTTTTATTTGAAATAATACTTGGTGACAAGCTGTTTTT TAGATAAAGTTTTACTTATTTTAACCGCTATGCAGTTTCCGCTATTTGCCCGCGATGCTATCTACTATATGACATAGCGG ATTTTGGACTCATCGCGATTTGTCGCGATCCGCGATTAATTACACTGGATGATATACTCTCACATCTACCCAATGATAGT GTTCCAGGGAAATTTTGTTTCAAGCAAAATATGTTCTGCGGTGGTTGTTTTAATCTGAAGAACTATAGCATACTCTTGTT GGTGATAAGAGTTCATAAGAATATTCCAAATGGAATTATTTATCGAAACTGAGTTGGTGCATGCGTTTCTGTTGAAATCT ACAAGAGAACATTTAGTTATATTATTAGAAATGGGTAGAGAAGTTTTTTTATTTCTTGTTTTTTTCTGTACCAGCTACTG CATCAACTTGCTTGAATTGTGTGTTTTTGTGATAGGTACCGTGCCATTACTAGTGCTTACTACCGAGGAGCTGTTGGTGC CTTACTTGTCTATGATGTAACGCGCCGAGCTACATTTGAGAATGCTGCAAGGTGGTTGAAAGAGTTGAGAGATCACACAG ACCCCAACATTGTGGTCATGCTTATTGGAAATAAGTCGGATCTTCGACACCTTGTTGCTGTCCCAACAGAAGATGGAAAA TCTTTTGCCGAGAGGGAGTCACTCTACTTCATGGAGACTTCTGCTTTGGAAGCAACCAATGTTGAAAATGCATTCACTGA GGTTCTTACTCAGATATATCGCATAGTGAGCAAGAGAGCAGTTGAAGCTGGCGACAGTGGCAGTTCCTCAGGACTCCCAT CCAAAGGACAGACAATAAACGTGAAAGAGGATTCTTCAGTTTTGAAGAGATTTGGATGCTGCTCAACCTAGATTCTTCCT CCATGGTGGTTGGTTTCTATAGCCTGTGTCATTCTGTAAATGCCTACACACGTGAATGGTGATATCATCTTGTACAATAA GGCTAGTCTTACAAATTGTTTTGGATGATGTTAACATACAAACATCATCCATGCAGGATTTATGTTTCGTAAAAGGGTCT TTTTAAAATCGTATTTGTGACAAATAGAACTACCCAAGTTCACATAGTTCAAGTTTTATTTGCAGGATTTTGCTATTTGT CTTGCTCCAATTATGGTGCAGCTAATTACAGTTTCAATCTGTTTTAGAATCAAAGGATTGAAACCCTTGTGTTTTAATTT TATGTAAGTGCTTACAGTATAAGTTTGGATTCTCTTTCAATCTTTCAGTGTGGCATGTTTTAGAATCACTTATAATTAGA AGCTACCAGCAGAATCATGTAGCGGATTATGCGTAAATCGGAAAAATGATGCCTGCTTAACAACGTTCTTCAGAACTAAT CTTGCCCAAACATGCAAGTAGGAGGGGGGAGGGGGTATAAAAGGAATCGAGTTTCTG
CDS sequence (LotjaGi3g1v0238600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGGTACAGAACCGATGACGAGTACGATTACCTTTTCAAGCTGGTTCTGATCGGCGATTCTGGTGTCGGCAAGTC CAACTTGCTCTCCAGATTCACCAAGAACGAGTTCAATTTGGAGTCCAAATCCACTATCGGCGTTGAGTTCGCTACCAAGA CCTTGAACGTTGATGCCAAGGTCGTTAAGGCTCAGATTTGGGACACTGCTGGTCAGGAAAGGTACCGTGCCATTACTAGT GCTTACTACCGAGGAGCTGTTGGTGCCTTACTTGTCTATGATGTAACGCGCCGAGCTACATTTGAGAATGCTGCAAGGTG GTTGAAAGAGTTGAGAGATCACACAGACCCCAACATTGTGGTCATGCTTATTGGAAATAAGTCGGATCTTCGACACCTTG TTGCTGTCCCAACAGAAGATGGAAAATCTTTTGCCGAGAGGGAGTCACTCTACTTCATGGAGACTTCTGCTTTGGAAGCA ACCAATGTTGAAAATGCATTCACTGAGGTTCTTACTCAGATATATCGCATAGTGAGCAAGAGAGCAGTTGAAGCTGGCGA CAGTGGCAGTTCCTCAGGACTCCCATCCAAAGGACAGACAATAAACGTGAAAGAGGATTCTTCAGTTTTGAAGAGATTTG GATGCTGCTCAACCTAG
Protein sequence (LotjaGi3g1v0238600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITS AYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEA TNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 217 | 214 | 5.9E-125 | – | |
| PANTHER | 4 | 217 | 214 | 5.9E-125 | – | |
| ProSiteProfiles | 9 | 216 | 208 | 35.682 | – | |
| SUPERFAMILY | 9 | 179 | 171 | 5.44E-58 | ||
| Gene3D | 11 | 194 | 184 | 4.3E-67 | – | |
| SMART | 11 | 177 | 167 | 1.0E-26 | – | |
| CDD | 11 | 175 | 165 | 5.63159E-127 | – | |
| TIGRFAM | 12 | 170 | 159 | 3.0E-37 | ||
| SMART | 14 | 177 | 164 | 1.8E-111 | – | |
| PRINTS | 14 | 35 | 22 | 2.2E-42 | – | |
| Pfam | 15 | 175 | 161 | 5.4E-61 | ||
| SMART | 16 | 173 | 158 | 1.8E-12 | – | |
| SMART | 19 | 210 | 192 | 5.3E-5 | – | |
| PRINTS | 37 | 53 | 17 | 2.2E-42 | – | |
| PRINTS | 55 | 77 | 23 | 2.2E-42 | – | |
| PRINTS | 117 | 130 | 14 | 2.2E-42 | – | |
| PRINTS | 152 | 174 | 23 | 2.2E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0238600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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