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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0242600 |
Transcript ID | LotjaGi3g1v0242600.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger family protein; TAIR: AT1G03840.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9ZWA6|IDD3_ARATH Zinc finger protein MAGPIE; TrEMBL-Plants: tr|A0A061GB64|A0A061GB64_THECC Beta-galactosidase; Found in the gene: LotjaGi3g1v0242600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:39413227..39413686) extracted from Lotus japonicus Gifu genome v1.2.
ACAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTTTGATGGCCACCAACAGATTCTTGTGTGAAACATGTGG GAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGGACACAACCTTCCATGGAAGCTCAAGCAAAGGACAA ACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTTGTGTCCACCATGATCCTTCAAGGGCTCTTGGAGAC TTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAGAAGTGGAAGTGCGACAAGTGCTCAAAGCGTTATGC TGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAGAGAATACAAGTGTGATTGTGGAACTATCTTTTCAA GGTAACTAACCTATCTTGCTGATAACAGCACCGTTATCCGTTCTAGCATGTATAGATTAA
CDS sequence (LotjaGi3g1v0242600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCAACAGATTCTTGTGTGAAACATGTGGGAAGGGCTTTCAAAGGGATCAGAATCTTCAGCTCCATCGACGCGG ACACAACCTTCCATGGAAGCTCAAGCAAAGGACAAACAAAGAACCGAGGAAGAGAGTTTATGTGTGTCCAGAGAAGAGTT GTGTCCACCATGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATCAAAAAGCACTTTTGCAGAAAGCATGGAGAAAAG AAGTGGAAGTGCGACAAGTGCTCAAAGCGTTATGCTGTGCAGTCTGATTGGAAAGCCCACTCAAAAACCTGTGGCACCAG AGAATACAAGTGTGATTGTGGAACTATCTTTTCAAGGTAA
Protein sequence (LotjaGi3g1v0242600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEPRKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEK KWKCDKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 119 | 119 | 9.8E-101 | – | |
PANTHER | 1 | 119 | 119 | 9.8E-101 | – | |
Gene3D | 2 | 29 | 28 | 3.6E-6 | – | |
SUPERFAMILY | 5 | 102 | 98 | 6.31E-8 | ||
ProSiteProfiles | 6 | 28 | 23 | 11.593 | ||
ProSitePatterns | 8 | 28 | 21 | - | ||
Gene3D | 39 | 119 | 81 | 4.9E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0242600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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