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LotjaGi3g1v0244700.1

Overview

Field Value
Gene ID LotjaGi3g1v0244700
Transcript ID LotjaGi3g1v0244700.1
Lotus japonicus genome version Gifu v1.2
Description Ras-related protein, expressed; TAIR: AT5G60860.1 RAB GTPase homolog A1F; Swiss-Prot: sp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f; TrEMBL-Plants: tr|I3S9N9|I3S9N9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0244700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:39982324..39985343) extracted from Lotus japonicus Gifu genome v1.2.

CTTAAATTTTCTCTCACCCTAATTTAGTAATTTTATAAATTTATGCTTTTTAGCACATAAACACCCTACTCAAAAAAGTT AAAAATATTCTATCAAAAAAAGGTTAAAAATAATAATAATAATAATAATAATAATAATAATAATACAGATCATCAACTTT TGAAATTTGAAGCCTTGAAAACTTTTTTCCTTGATTTTCTCAAATAAAAAAAAAGAGACAAGACCTATGGTGGGGTGAAA GAAAAACGTAAAAAGAAGCAAACCGTGTGGGTGTGTTTTCTATCTGAAGACAGAAACAGATATCATTCCAGCTTTGAATG CTTCTCCCTCCTCCTCCTCCTCCTGTAATCAAAGAAATTCAACGACCCTTTTCTCTCCAATGCTGAAAGTTTCAAGCTTT ATACGCAGTTACCAAATCGAATGCCTTAAAAACCATTAACCAAACTGACCCATTTCATTGAATCTCAGATCTTTTGAAAC CCCTCCATCAAAGTTCAAATCCAGCTGAAGGAAGAGGAAAAATGGGTGCGTACAGAGCGGATGATGATTATGATTACTTG TTCAAGGTGGTTCTGATCGGAGACTCTGGCGTTGGGAAATCCAATCTATTGTCTCGATTCACCAAAAATGAGTTTAGCTT GGAATCCAAATCCACCATTGGTGTTGAATTCGCCACCCGCAGTATCCATGTTGATGATAAGATTGTAAAGGCGCAAATTT GGGACACCGCTGGCCAAGAAAGGTTACCCCTTTTGCTTTTTTTTCGGTTTTCCTCATTGGCTCTGATCTCATTCAATTTG GGATTTCTCTTTCTAGTTTTTGTATGGCTGGGTTTTTCATGATTGGAAATGCTTTGTGTTGATTTCTTTAATGGGGTGTA TTAGTTTTTAGCTTGGGATTTGATTTAGCAATGGTGCATGCTGTGCGATTTTTTTTTGTTGGTTGTGGGGGTTATTGCTT TTGATCTGGATCATCAGGACAATGGAATGTTAGGCAATGTCCTTTTTTTTTGAAAAAGGAATGCAAACATGTGATTAGGC ATTAGATTTTGGTGTAGGATGGAGAATGCCGTTCACATTTTTCTGGGGTGGGGATGATTTGGGTACCATTCATGTGACTA ATTCATAGTACTATTTATGGCATTGTGGATGGATGTATGAAGCAAGTTGCACAATTGATGAAATTGATCATTTGGTGATA TAATGAATTGATTGATGGCTTATTTCTCGTTGTTTGGTTTCAACTTTCAAGTGATGGATTTGATGAAATCATTGATTTGG TGAAATAATGAAGGGGTTGATGGCTGTTTTCCCGTTGTTGGTTTTCATGTGATGGAAGCTGGTGGGGAGGGGCGATAGAT CATACAACATTTCTTCTAGACCCATTGATTTTTGCAAGTTCTGATATTTTTTCAGTTTGCCAATTTGCTTACTTTCTTTA GTAGTGTGTTGTCCTAGAGATATAATGGGAAGATGACAGGAAATAAAATGTGAAGTTGATCATGTGACTTCTAAAGTTTG GCTTGCTTTCATGTTGTTCATACACCAGATACTTACTTTAAATGAAATGAAACAGAGCTTTGAGTCTGTGACCTGTTAAC TAAAATATCACTGTTTCAAACTTCTGATCAATGCTTAATGAAATGGTGTTAGCTTTGTGTGTAGTGTAGGACTAGGATGG TTATTTGTACTTTAGGCTGAGGTTTAATGAGATACTTTGGTTTATTTTCATTATGCCAATGAGAATGGTGTATACTCATG GACAAACATGGTCCAATATATGAGAGTGGAGCGGAGCTATTGCGGGCTGCATGAGTATAGTAACAACTTAATATAGAAAT TACCTCGATTCTGTCCTTCAATCATTGACATCGATTTAATCCCTCAATCTGTACAAAAGAGTTGGTGCCACTTACGATGG TTGAGGGACTAACTTGATACGATGGTTGAGGGACTAACTTGATGTTGAAATTATTTGGAGGGTTGAAGTCATGACTATTA TATTTGGAGAATCGAAATAGGAGCTTACACTAAATAAAATAGGAACAGAGATGAGTTTGAAGAAAATAAATCTTTTTAGT TTTTACAATGATCTGATTTGTAACCTAGCTGTAGTATGCTTACACTTGTAAACTTGCAGTTATTTTTCATCTGCCTCATG AAACTTACTTATTATGACTAGTTACATTATATGCATTCCATAACGCAGTATATCTCAGTCTCACTCTTGTTAATTGCTGC AGATATCGTGCAATCACAAGCGCATATTATCGAGGAGCTGTTGGTGCATTGCTTGTGTATGATGTTACTAGACATGTGAC TTTTGAAAATGTGGAGAGATGGTTAAAGGAACTTCGTGATCACACAGATGCCAACATCGTAATTATGCTTGTGGGAAACA AGGCAGATCTTCGTCACTTGCGTGCCGTGTCCACCGATGATGCCAAGGGGTTTGCTGAAAGGGAAAATACTTTTTTCATG GAAACCTCTGCCCTCGAGTCCTTGAATGTCGACAATGCTTTCACAGAGGTTCTCACTCAGATATATCGAGTTGTTAGTAA GAAGACGCTCGAGATCGGGGATGACCCTGCAGCCTTGCCCAAGGGGCAGACAATCAATGTTGGCAGTAAAGATGATGTCT CAGCTGTTAAAAAGGTTGGATGCTGCTCGGCATAGTTTGAGAGAGAATAGAAAGGAAGCTCTTCACAACAAAACAACATA TCTATCTGTGCATGATTCAACTAATCATCAATCCTCAACATTTTGGGATCCATGTGAAATGTTTTAATACCTACACTTTT TGTCTTTTGTAATTTTTCCCACATCTTTTGTCTTGTTTATTACTTTCTCACCTTTTTTCCCCTCTAAGCATTGTTTGGTC TATAGGAATGATGTCATTTTACCCTTATAGGTATATGAAATTTACTCTTTGTATTGAATGAAAGGGATATCCTGTTCTAA TCTTGATCAGTCCAGTAAGTAAGGGCCTGTTTGTTTCCTGTTTTCAAAACAAAAACTGAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0244700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGCGTACAGAGCGGATGATGATTATGATTACTTGTTCAAGGTGGTTCTGATCGGAGACTCTGGCGTTGGGAAATC CAATCTATTGTCTCGATTCACCAAAAATGAGTTTAGCTTGGAATCCAAATCCACCATTGGTGTTGAATTCGCCACCCGCA GTATCCATGTTGATGATAAGATTGTAAAGGCGCAAATTTGGGACACCGCTGGCCAAGAAAGATATCGTGCAATCACAAGC GCATATTATCGAGGAGCTGTTGGTGCATTGCTTGTGTATGATGTTACTAGACATGTGACTTTTGAAAATGTGGAGAGATG GTTAAAGGAACTTCGTGATCACACAGATGCCAACATCGTAATTATGCTTGTGGGAAACAAGGCAGATCTTCGTCACTTGC GTGCCGTGTCCACCGATGATGCCAAGGGGTTTGCTGAAAGGGAAAATACTTTTTTCATGGAAACCTCTGCCCTCGAGTCC TTGAATGTCGACAATGCTTTCACAGAGGTTCTCACTCAGATATATCGAGTTGTTAGTAAGAAGACGCTCGAGATCGGGGA TGACCCTGCAGCCTTGCCCAAGGGGCAGACAATCAATGTTGGCAGTAAAGATGATGTCTCAGCTGTTAAAAAGGTTGGAT GCTGCTCGGCATAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0244700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERYRAITS AYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAVSTDDAKGFAERENTFFMETSALES LNVDNAFTEVLTQIYRVVSKKTLEIGDDPAALPKGQTINVGSKDDVSAVKKVGCCSA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00177
1 179 179 0.0073 –
PANTHER
PTHR24073:SF1057
4 216 213 7.0E-127 –
PANTHER
PTHR24073
4 216 213 7.0E-127 –
ProSiteProfiles
PS51419
9 215 207 36.111 –
SUPERFAMILY
SSF52540
9 182 174 5.1E-60
IPR027417
CDD
cd01868
11 175 165 8.27396E-130 –
Gene3D
G3DSA:3.40.50.300
11 192 182 6.5E-68 –
SMART
SM00173
11 177 167 5.3E-28 –
TIGRFAM
TIGR00231
12 170 159 2.3E-40
IPR005225
PRINTS
PR00449
14 35 22 3.9E-42 –
SMART
SM00175
14 177 164 1.1E-111 –
Pfam
PF00071
15 175 161 1.2E-61
IPR001806
SMART
SM00174
16 173 158 3.7E-12 –
SMART
SM00176
19 216 198 2.6E-8 –
PRINTS
PR00449
37 53 17 3.9E-42 –
PRINTS
PR00449
55 77 23 3.9E-42 –
PRINTS
PR00449
117 130 14 3.9E-42 –
PRINTS
PR00449
152 174 23 3.9E-42 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0244700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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