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LotjaGi3g1v0248500.2

Overview

Field Value
Gene ID LotjaGi3g1v0248500
Transcript ID LotjaGi3g1v0248500.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase, putative; TAIR: AT2G22310.1 ubiquitin-specific protease 4; Swiss-Prot: sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4; TrEMBL-Plants: tr|A0A1J7GDF7|A0A1J7GDF7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0248500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:41232474..41238536) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGACCAATTTCCTGAAGGGGAACGTTACTTTGGCCTTGAGAA TTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGGTCCTTCCTTCACACCATTCTTCGATTTCAAATTTTATTGTTT TTCTCTGCTTATTTCGGTACTTAATTGTTCATTACAAATATTATTGCTTTCGCTGAATATTTAAATGCTAATATAATGCA AATGGATGAGCATATATATATACACTCACACATTAAAGCGTTTACTGGTTTATCACGAAAATGTGGATCAATTAACTGAA AAAAGACGAAGAGGGAAATGTTTTGGGGCTTGTGGTGCCCTTCCCTTCTTCAATTTGTTGGCAATTTGCTTTCATTGGCT CGAAAACTAGTTTGTCAACTTTTATTTTGCTTTAAGTGTTAATACTTTATGCGCGTAACTTGAATGAGTTCTGTTCGACG AATAGCAAAGCTTATTTTAAGTTCTTACTATTGGATAAGGATACTGGAATATTAATATCAGCTTATCTGCTACACAACAT ACCTAGACATGTATGGCTGGATTAGTCTAGCCTTCTAGGTTTGTTTAGATTAATTGCTATCCTGATGAACTATGATTGGA TCCTAGAAATTTGGCATGTGTGCTAGTTTAATTGCTCTCTTTTCTCTTTCCTCAGGCTCTATACTTCTGTGTTCCTTTTC GTGAACAATTGCTAGAGTATTATGGAAATAACAAAAGCATAACAGATGCAGAGGAAAATCTTTTGACTTGCTTAGCTGAC CTATTTTCACAGGTAATGAGGCTATGTTTGGAAAATGCGTGTTTTTTTTTTTTTAATATTTGATTTACTGTTAGAGAGTT TGAATTGTTTTCAGTGATTGTAGTAAGGTAACATATGTTGGTGTTACTTAAATGAAGGATGAAACCAATGCAGTGGGAAC CTGATTGTTTTACTTAATAACTTTTTAACCAGTCTCAGACCAATTAATTTTTATCCCAGAAATTACATAAAAATCTGTAA GAATGTGAGAATGTTAACCAAGTTTCCGCTTTGTTCTTCCAAAAGAAGAATAGTTTCTTTTGCAAATCTTAGCTAAAGAC CTTACATTCCTACAGACCCAACTCCCAGTAAGAATCTAAATTTTGTAACATTTTGACCATTTTCTTTCCTCACATGACAA ATTGATGCACTTTCCTGCTTATTTCTTACTTTAATGGTTTTGAGTTTAACATGTGTTATTTTTTCTTTGGAATAGATAAG TTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAACGATTTGTACAGAGGTTGAAAAAACAAAATGAACTGTTCCGTA GCTATATGCACCAGGTATGTGTTTAAACTGATAAGCATGAGACCAGATGTCAATAGGTGACTATTCTACACATTTATAAC TTTCTTTTGACAGTTAAACAGAATATCAGTTTGTATACACTTACGTGTTTGGCTATGTTATGTGTTTCTCCATGTTTATG GAAGAATCTATGCACACAGTCATGTTTTGTATATGTATGTCCCTGCCTAGTTGCTTCTGACTTCTGAGATATGTTAAGTA TGAATCTGATAAATCTGGATCAGAATCAATAGAAAATTTGAGATAAACTCAGTCCCAACTCAGTATCAAAGTTGATGCAG GAGCTAAGATTTAGATGAAAATACAGAGAGAAATCAGAAAAGACCCTTCCAGGTATTCAAGAGATCTGAGCTGTCCTTTC CGATTACTGAAATTCTCAACCAAATGAAAAGTGTCTCACTGTCCCTCTCTCTTTTCATATTTATTCCAGTCCACTGTTTA CGAAAAATTATTGTCTACTGGACAGTTATAAACTCCTTCCTAGTTATTCCTGCCCCTCTTTATTACTCCCTCCATTCCTA TATATAAGTCACTTTTACCTAATTCTCTAGGATTAAGAAAAGTAGTTAGCAGCATTAAATTTCAAAAAGTTTTATTAACT TTCCAAAATTACCCTTATTTAAAAACGTAGAAATTCAACAAATTTCTCACTGTTTTAATTATCTGCTTAATTTCTCATGA ATTTATTTCTCGAAGTTGATAACTTTTCAAAATCTCACTATCTCTTTCGTATTAAATATGAGAGTAAATTTGGGAAAAAA TATTTAATGTTTCCTAGATATTAGAAAGTGACTTATGTTTAGGGGAACAAAGATTTTTCACAAAAAGTGACTGGTGATAA GGAACGGAGGGAGAGCACAAGTTAGTTTCTATTATTAATGACTAATGGGTGGTTTAGTAATAGAATCTTAGCTGTAGATG CTTTTATCTGAAAGATAAGTTTCTAGCTGGCAAAGTTACGGTTGTTCAATTGGTAGATCATTAGTCAATTCTGAGTTACT CTTTTCTTGTTATTGTCGCTCATGATAGCAAAATGATTTTAAGCTTGTAGTTAAACTTGAAGGCAGGGTTAGGATGATGT TCTCTAGCTGTCCTGGGTAATATTTATGGTCGCAAATTGCAAGCCACTCCCTTGATCTGAACATATTGTACTGGAAAGGA TATTCTCTTGAACTATGTTTCATAAGATGAGAACCGAACCTCTTGACTTGGTCATGATACTTGTGCATATTGAGCCTTTA TATGCAGAAAATTAGTAATATATTTATCTCTCCAGCGGTACTGGAAAATATGTTAAACTTGTTTTTTATAGACCACTATA TGCCTCATGGGAAACGTAATCTTTTGAAATGTGTTTCCAGTTGGCTCTTGAAGATGAGAAACTCTTGAAACTTGTTTTTT ATTGAACATTATATATGCCTTAACGCAACAACCCTTTATCACTCTAGCATATATCTTTAGATGTCTGCTCACGCTTTTAC CAGTACACACAATGATTTGGCCTGTTGGCTTTATTCTTTTTGAGGGAATAATTGGTTGATTCCCGTTTAGATGTTCATCT AATGCCATTTCAGTGAAGTTGAACAATGGGGATTTGTATGTTCAAATGATGTTGTATGTCTCAATTTGTTTCGTATATAC ATCTCCTTGAACATCATAATTGATGAAATTAAAGGGGAAAAGGAAATACAGAGAATTAAGTTCTATAATATATACTGGGT TTGATCTTACAAAAGACAAAACACTTATGACTTACCCTATTTGTAGTAATGGTATACTCCTAATTCTAGTTAAATAGTGA AACTAATTAGAACTCCTATTCTTAACTAAATAATGAAGCAAAAGAGCATAAATAAGGAAAAGAAGAAACCAACCTGAAAG AATAGCCTAACTTGCCTTATATGATCAAGGATATTATAAGATGCCTTTTTATATTCTAACACTTCTCATCAAGCTAAAAC TTGCTTAGCTTTAAGCTTGCTACAAATAAGTCATTTTTTAAAAAGGAAAAATAATGAGGGACTTGATTGATAATCTGGGA TTGTTGCAAGTCCAAATTGGTTCTTTAGAGAGAAAGTCAACTAGGGTGAAAAACCAACAAAAATATGCTCGAAAACAAAA TAAGGTTGAAACATTAGCAACTTGGTAGCAACCACTAACAAAAACACCAAAAGAGAACGATTTGAGCTGATGATCACAAT AGAAGAAGCGGCGATGTGAACCAAGTCCAGTAAGGTGGTGTGTGCACCTCATGTGCTAGTGATAGCTTATACCAGGGCAT ATGATAGAGGATCAAGAGGCAGTGCTCGGGAGATTGGTTGGTCTGTTGTTTCTGAGATGGAAGAGGGTGTCACCACATCT GCACAAGATGATTGTAGAAAGTGGGCTAGTGCTTGTAACAGCTGAAGCCCTGAAAATAGAGAATCAAAGCTATGACGCAC CTTGGATTGGCCAATCAGTGGTGTCAGAGACAACTTTTGATGTCATCCTCAACACTTGATGTCTATAGAGAGGGCCAGCT CTGACAGGGACTAAGTAAAACCAAATAACAAAAAACGGATCAAAATTCGAGAAAACAATGTATGGTGGTGGGTCAACGCT GATATTAGCTAGAACGTGAAAAGCAATGATACGGTTGAAGGATTAATCAAATTGCTTGTTAGGGAGAGAATGACTTTAGT ATAGTAGTTCCCAACTTTGGGAACTAGCAATGTAACATTGATAAGACAGGTCGCGGAGGATGGTACCACTTTGATGAAAT TATAGGGTTTAGTCTTTCAGGTGTAGAATGTGGAAAATTAAATACATAATAAAATTGTATTAGCATAATACAATGGGTTT GATCTTACTAAAGTCAAATCACGTACCCTTCTAGTCAATTAATTAAGACTCCTAAAAGAAACCAATAAAAATAAAGAAAC AAACCCTAAAAAATAATTTAAATTACAGAGATGTCATCAATATATTAAGATCTCTTCTTATATTCTTAACAGAAGTTATT TGACCAGTGCATGTTATTCCTTATTTTTTAAATGTATTGTTAATTCTGTTTGTTTGACTCGATGTTCTTTTTGTTGCATG CTGTTTCTTGTTAATCTAGGTTTTTTAATTATTATTTTTTTGGAATTTAATGCAACATTGTCATTGTGAAACTTCTCATT TTTTATAGGATGCCCACGAATTCTTGAACTTTCTGTTAAATGAACTTGTTGACATTCTTGAGAAGGAGGCCCAGTTTGCA AAAAATGATCAAGAGACATCACCACCTTCTGAAAAGATTGCAAATGGACCAAAGAATGGTCTAGCTAATGGTGGTGTTAA AAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGTAACCTTGATTTGGCAGTTCAATATTCTATATTTTAACA TATTGCTTGGAATAACCAAAATTGTGAACTTTGTATTAGATTCATATTGATACCTAATATGCACTCGGTATGTATACAAC TCAAAAATGGAGTTGCAATTGTTACTCACTCCATAGTGAGACTGAGATCACAAAATTAGTTTATTTTCCTAATTTTCTTT AAGGAATCTTATTATTGGAAATTGCTTTCCTCAGGGAATACTCACCAACGAGACAAAATGCTTGCAATGTGAAACAGTAA CGGCAAGGGACGAAACATTTTTTGACCTGAGCCTTGATATTGAACAAAACAGTTCGATTACAAGTTGTTTGAAAAATTTC AGTTCGACTGAGACGTTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGGTGCGTTACTCTTTGGCGCAATTT TTTATTTTATAACTTCCTGAATACTATTTTTGGGGCGTCAGATGTTGCTATTCTACATAATGAGGTTAAAGGTTAGTTTA ACCAATTTTGGATTGTGGGAAGTTTTCGTGATGAAGCAGTTATGTAAAATGGCTTCAATATCACATGATTATTTGTTGGC AATATCTAATCTCTTTATAATTACAAATAAATTGCTCTATTTTTATTTATTATTTATTATACTATGATGTTTTCGGTTTT TGGGTTTATGGTTGTGACGCAACGTTATCAGAAGACTCGTAGGTTTACCTTCCATTGATGATTGGCATTTTTTTCATCTG TTACCTGAAACAGTTTTTATGGCTGTGTGTCTGTCAGTGTATAGTTCTGTGAAAAAATGCATGTACTCCCTGCTTTAATT TTCATGTCCTTTATACCGGTCCTTAACCAATGTCAATTTCCTTGTGATATTTATTAGCTTGCAAGAAGCCCAGAAGAGGA TGAAGATAAAGAAACCTCCTCACATTTTGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTAGGCCGCTACAAG AAGCTATCGTACCGTGTTGTCTTCCCCCTTGAGCTCAGGTTGAGTGATACTGTTGAAGAGGCAGATATTGAGTATTCTCT ATTTGCAGTTGTTGTCCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGT TATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCTCAAGAATATTCC AGTAATACAGACCATGGTTACATTTTGTTCTATGAGAGCGTTGGCTCTGGTAACTGAAACTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0248500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGACCAATTTCCTGAAGGGGAACGTTACTTTGGCCTTGAGAA TTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAAC GATTTGTACAGAGGTTGAAAAAACAAAATGAACTGTTCCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTT CTGTTAAATGAACTTGTTGACATTCTTGAGAAGGAGGCCCAGTTTGCAAAAAATGATCAAGAGACATCACCACCTTCTGA AAAGATTGCAAATGGACCAAAGAATGGTCTAGCTAATGGTGGTGTTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAA ATTTTCAGGGAATACTCACCAACGAGACAAAATGCTTGCAATGTGAAACAGTAACGGCAAGGGACGAAACATTTTTTGAC CTGAGCCTTGATATTGAACAAAACAGTTCGATTACAAGTTGTTTGAAAAATTTCAGTTCGACTGAGACGTTGAATGCCGA AGACAAATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCCCAGAAGAGGATGAAGATAAAGAAACCTCCTCACATTT TGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTAGGCCGCTACAAGAAGCTATCGTACCGTGTTGTCTTCCCC CTTGAGCTCAGGTTGAGTGATACTGTTGAAGAGGCAGATATTGAGTATTCTCTATTTGCAGTTGTTGTCCATGTTGGGAG TGGGCCCAACCACGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGA TGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCTCAAGAATATTCCAGTAATACAGACCATGGTTACATTTTG TTCTATGAGAGCGTTGGCTCTGGTAACTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0248500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNF LLNELVDILEKEAQFAKNDQETSPPSEKIANGPKNGLANGGVKKEPLVTWVHKNFQGILTNETKCLQCETVTARDETFFD LSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFP LELRLSDTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYIL FYESVGSGN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
1 39 39 7.1E-182 –
ProSiteProfiles
PS50235
1 325 325 47.671
IPR028889
Gene3D
G3DSA:3.90.70.10
1 325 325 8.1E-107 –
PANTHER
PTHR24006:SF766
1 39 39 7.1E-182 –
SUPERFAMILY
SSF54001
21 324 304 2.16E-82
IPR038765
CDD
cd02663
24 323 300 7.06203E-175 –
ProSitePatterns
PS00972
24 39 16 -
IPR018200
PANTHER
PTHR24006
39 327 289 7.1E-182 –
PANTHER
PTHR24006:SF766
39 327 289 7.1E-182 –
Pfam
PF00443
44 322 279 1.1E-43
IPR001394
MobiDBLite
mobidb-lite
96 120 25 - –
ProSitePatterns
PS00973
256 274 19 -
IPR018200

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0248500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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