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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0248500 |
Transcript ID | LotjaGi3g1v0248500.3 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G39910.1 ubiquitin-specific protease 3; Swiss-Prot: sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3; TrEMBL-Plants: tr|I1MYR5|I1MYR5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0248500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:41232474..41238536) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGACCAATTTCCTGAAGGGGAACGTTACTTTGGCCTTGAGAA TTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGGTCCTTCCTTCACACCATTCTTCGATTTCAAATTTTATTGTTT TTCTCTGCTTATTTCGGTACTTAATTGTTCATTACAAATATTATTGCTTTCGCTGAATATTTAAATGCTAATATAATGCA AATGGATGAGCATATATATATACACTCACACATTAAAGCGTTTACTGGTTTATCACGAAAATGTGGATCAATTAACTGAA AAAAGACGAAGAGGGAAATGTTTTGGGGCTTGTGGTGCCCTTCCCTTCTTCAATTTGTTGGCAATTTGCTTTCATTGGCT CGAAAACTAGTTTGTCAACTTTTATTTTGCTTTAAGTGTTAATACTTTATGCGCGTAACTTGAATGAGTTCTGTTCGACG AATAGCAAAGCTTATTTTAAGTTCTTACTATTGGATAAGGATACTGGAATATTAATATCAGCTTATCTGCTACACAACAT ACCTAGACATGTATGGCTGGATTAGTCTAGCCTTCTAGGTTTGTTTAGATTAATTGCTATCCTGATGAACTATGATTGGA TCCTAGAAATTTGGCATGTGTGCTAGTTTAATTGCTCTCTTTTCTCTTTCCTCAGGCTCTATACTTCTGTGTTCCTTTTC GTGAACAATTGCTAGAGTATTATGGAAATAACAAAAGCATAACAGATGCAGAGGAAAATCTTTTGACTTGCTTAGCTGAC CTATTTTCACAGGTAATGAGGCTATGTTTGGAAAATGCGTGTTTTTTTTTTTTTAATATTTGATTTACTGTTAGAGAGTT TGAATTGTTTTCAGTGATTGTAGTAAGGTAACATATGTTGGTGTTACTTAAATGAAGGATGAAACCAATGCAGTGGGAAC CTGATTGTTTTACTTAATAACTTTTTAACCAGTCTCAGACCAATTAATTTTTATCCCAGAAATTACATAAAAATCTGTAA GAATGTGAGAATGTTAACCAAGTTTCCGCTTTGTTCTTCCAAAAGAAGAATAGTTTCTTTTGCAAATCTTAGCTAAAGAC CTTACATTCCTACAGACCCAACTCCCAGTAAGAATCTAAATTTTGTAACATTTTGACCATTTTCTTTCCTCACATGACAA ATTGATGCACTTTCCTGCTTATTTCTTACTTTAATGGTTTTGAGTTTAACATGTGTTATTTTTTCTTTGGAATAGATAAG TTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAACGATTTGTACAGAGGTTGAAAAAACAAAATGAACTGTTCCGTA GCTATATGCACCAGGTATGTGTTTAAACTGATAAGCATGAGACCAGATGTCAATAGGTGACTATTCTACACATTTATAAC TTTCTTTTGACAGTTAAACAGAATATCAGTTTGTATACACTTACGTGTTTGGCTATGTTATGTGTTTCTCCATGTTTATG GAAGAATCTATGCACACAGTCATGTTTTGTATATGTATGTCCCTGCCTAGTTGCTTCTGACTTCTGAGATATGTTAAGTA TGAATCTGATAAATCTGGATCAGAATCAATAGAAAATTTGAGATAAACTCAGTCCCAACTCAGTATCAAAGTTGATGCAG GAGCTAAGATTTAGATGAAAATACAGAGAGAAATCAGAAAAGACCCTTCCAGGTATTCAAGAGATCTGAGCTGTCCTTTC CGATTACTGAAATTCTCAACCAAATGAAAAGTGTCTCACTGTCCCTCTCTCTTTTCATATTTATTCCAGTCCACTGTTTA CGAAAAATTATTGTCTACTGGACAGTTATAAACTCCTTCCTAGTTATTCCTGCCCCTCTTTATTACTCCCTCCATTCCTA TATATAAGTCACTTTTACCTAATTCTCTAGGATTAAGAAAAGTAGTTAGCAGCATTAAATTTCAAAAAGTTTTATTAACT TTCCAAAATTACCCTTATTTAAAAACGTAGAAATTCAACAAATTTCTCACTGTTTTAATTATCTGCTTAATTTCTCATGA ATTTATTTCTCGAAGTTGATAACTTTTCAAAATCTCACTATCTCTTTCGTATTAAATATGAGAGTAAATTTGGGAAAAAA TATTTAATGTTTCCTAGATATTAGAAAGTGACTTATGTTTAGGGGAACAAAGATTTTTCACAAAAAGTGACTGGTGATAA GGAACGGAGGGAGAGCACAAGTTAGTTTCTATTATTAATGACTAATGGGTGGTTTAGTAATAGAATCTTAGCTGTAGATG CTTTTATCTGAAAGATAAGTTTCTAGCTGGCAAAGTTACGGTTGTTCAATTGGTAGATCATTAGTCAATTCTGAGTTACT CTTTTCTTGTTATTGTCGCTCATGATAGCAAAATGATTTTAAGCTTGTAGTTAAACTTGAAGGCAGGGTTAGGATGATGT TCTCTAGCTGTCCTGGGTAATATTTATGGTCGCAAATTGCAAGCCACTCCCTTGATCTGAACATATTGTACTGGAAAGGA TATTCTCTTGAACTATGTTTCATAAGATGAGAACCGAACCTCTTGACTTGGTCATGATACTTGTGCATATTGAGCCTTTA TATGCAGAAAATTAGTAATATATTTATCTCTCCAGCGGTACTGGAAAATATGTTAAACTTGTTTTTTATAGACCACTATA TGCCTCATGGGAAACGTAATCTTTTGAAATGTGTTTCCAGTTGGCTCTTGAAGATGAGAAACTCTTGAAACTTGTTTTTT ATTGAACATTATATATGCCTTAACGCAACAACCCTTTATCACTCTAGCATATATCTTTAGATGTCTGCTCACGCTTTTAC CAGTACACACAATGATTTGGCCTGTTGGCTTTATTCTTTTTGAGGGAATAATTGGTTGATTCCCGTTTAGATGTTCATCT AATGCCATTTCAGTGAAGTTGAACAATGGGGATTTGTATGTTCAAATGATGTTGTATGTCTCAATTTGTTTCGTATATAC ATCTCCTTGAACATCATAATTGATGAAATTAAAGGGGAAAAGGAAATACAGAGAATTAAGTTCTATAATATATACTGGGT TTGATCTTACAAAAGACAAAACACTTATGACTTACCCTATTTGTAGTAATGGTATACTCCTAATTCTAGTTAAATAGTGA AACTAATTAGAACTCCTATTCTTAACTAAATAATGAAGCAAAAGAGCATAAATAAGGAAAAGAAGAAACCAACCTGAAAG AATAGCCTAACTTGCCTTATATGATCAAGGATATTATAAGATGCCTTTTTATATTCTAACACTTCTCATCAAGCTAAAAC TTGCTTAGCTTTAAGCTTGCTACAAATAAGTCATTTTTTAAAAAGGAAAAATAATGAGGGACTTGATTGATAATCTGGGA TTGTTGCAAGTCCAAATTGGTTCTTTAGAGAGAAAGTCAACTAGGGTGAAAAACCAACAAAAATATGCTCGAAAACAAAA TAAGGTTGAAACATTAGCAACTTGGTAGCAACCACTAACAAAAACACCAAAAGAGAACGATTTGAGCTGATGATCACAAT AGAAGAAGCGGCGATGTGAACCAAGTCCAGTAAGGTGGTGTGTGCACCTCATGTGCTAGTGATAGCTTATACCAGGGCAT ATGATAGAGGATCAAGAGGCAGTGCTCGGGAGATTGGTTGGTCTGTTGTTTCTGAGATGGAAGAGGGTGTCACCACATCT GCACAAGATGATTGTAGAAAGTGGGCTAGTGCTTGTAACAGCTGAAGCCCTGAAAATAGAGAATCAAAGCTATGACGCAC CTTGGATTGGCCAATCAGTGGTGTCAGAGACAACTTTTGATGTCATCCTCAACACTTGATGTCTATAGAGAGGGCCAGCT CTGACAGGGACTAAGTAAAACCAAATAACAAAAAACGGATCAAAATTCGAGAAAACAATGTATGGTGGTGGGTCAACGCT GATATTAGCTAGAACGTGAAAAGCAATGATACGGTTGAAGGATTAATCAAATTGCTTGTTAGGGAGAGAATGACTTTAGT ATAGTAGTTCCCAACTTTGGGAACTAGCAATGTAACATTGATAAGACAGGTCGCGGAGGATGGTACCACTTTGATGAAAT TATAGGGTTTAGTCTTTCAGGTGTAGAATGTGGAAAATTAAATACATAATAAAATTGTATTAGCATAATACAATGGGTTT GATCTTACTAAAGTCAAATCACGTACCCTTCTAGTCAATTAATTAAGACTCCTAAAAGAAACCAATAAAAATAAAGAAAC AAACCCTAAAAAATAATTTAAATTACAGAGATGTCATCAATATATTAAGATCTCTTCTTATATTCTTAACAGAAGTTATT TGACCAGTGCATGTTATTCCTTATTTTTTAAATGTATTGTTAATTCTGTTTGTTTGACTCGATGTTCTTTTTGTTGCATG CTGTTTCTTGTTAATCTAGGTTTTTTAATTATTATTTTTTTGGAATTTAATGCAACATTGTCATTGTGAAACTTCTCATT TTTTATAGGATGCCCACGAATTCTTGAACTTTCTGTTAAATGAACTTGTTGACATTCTTGAGAAGGAGGCCCAGTTTGCA AAAAATGATCAAGAGACATCACCACCTTCTGAAAAGATTGCAAATGGACCAAAGAATGGTCTAGCTAATGGTGGTGTTAA AAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTTCAGGTAACCTTGATTTGGCAGTTCAATATTCTATATTTTAACA TATTGCTTGGAATAACCAAAATTGTGAACTTTGTATTAGATTCATATTGATACCTAATATGCACTCGGTATGTATACAAC TCAAAAATGGAGTTGCAATTGTTACTCACTCCATAGTGAGACTGAGATCACAAAATTAGTTTATTTTCCTAATTTTCTTT AAGGAATCTTATTATTGGAAATTGCTTTCCTCAGGGAATACTCACCAACGAGACAAAATGCTTGCAATGTGAAACAGTAA CGGCAAGGGACGAAACATTTTTTGACCTGAGCCTTGATATTGAACAAAACAGTTCGATTACAAGTTGTTTGAAAAATTTC AGTTCGACTGAGACGTTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGGTGCGTTACTCTTTGGCGCAATTT TTTATTTTATAACTTCCTGAATACTATTTTTGGGGCGTCAGATGTTGCTATTCTACATAATGAGGTTAAAGGTTAGTTTA ACCAATTTTGGATTGTGGGAAGTTTTCGTGATGAAGCAGTTATGTAAAATGGCTTCAATATCACATGATTATTTGTTGGC AATATCTAATCTCTTTATAATTACAAATAAATTGCTCTATTTTTATTTATTATTTATTATACTATGATGTTTTCGGTTTT TGGGTTTATGGTTGTGACGCAACGTTATCAGAAGACTCGTAGGTTTACCTTCCATTGATGATTGGCATTTTTTTCATCTG TTACCTGAAACAGTTTTTATGGCTGTGTGTCTGTCAGTGTATAGTTCTGTGAAAAAATGCATGTACTCCCTGCTTTAATT TTCATGTCCTTTATACCGGTCCTTAACCAATGTCAATTTCCTTGTGATATTTATTAGCTTGCAAGAAGCCCAGAAGAGGA TGAAGATAAAGAAACCTCCTCACATTTTGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTAGGCCGCTACAAG AAGCTATCGTACCGTGTTGTCTTCCCCCTTGAGCTCAGGTTGAGTGATACTGTTGAAGAGGCAGATATTGAGTATTCTCT ATTTGCAGTTGTTGTCCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGT TATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCTCAAGAATATTCC AGTAATACAGACCATGGTTACATTTTGTTCTATGAGAGCGTTGGCTCTGGTAACTGAAACTAG
CDS sequence (LotjaGi3g1v0248500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGACCAATTTCCTGAAGGGGAACGTTACTTTGGCCTTGAGAA TTTCGGCAACACTTGTTACTGCAACAGCGTTTTGCAGTATTATGGAAATAACAAAAGCATAACAGATGCAGAGGAAAATC TTTTGACTTGCTTAGCTGACCTATTTTCACAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAACGATTT GTACAGAGGTTGAAAAAACAAAATGAACTGTTCCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTTCTGTT AAATGAACTTGTTGACATTCTTGAGAAGGAGGCCCAGTTTGCAAAAAATGATCAAGAGACATCACCACCTTCTGAAAAGA TTGCAAATGGACCAAAGAATGGTCTAGCTAATGGTGGTGTTAAAAAAGAGCCTTTAGTTACTTGGGTGCACAAAAATTTT CAGGGAATACTCACCAACGAGACAAAATGCTTGCAATGTGAAACAGTAACGGCAAGGGACGAAACATTTTTTGACCTGAG CCTTGATATTGAACAAAACAGTTCGATTACAAGTTGTTTGAAAAATTTCAGTTCGACTGAGACGTTGAATGCCGAAGACA AATTTTTTTGTGACAAGTGCTGCAGCTTGCAAGAAGCCCAGAAGAGGATGAAGATAAAGAAACCTCCTCACATTTTGGTC ATCCATCTTAAGCGGTTTAAATACATGGAACAGCTAGGCCGCTACAAGAAGCTATCGTACCGTGTTGTCTTCCCCCTTGA GCTCAGGTTGAGTGATACTGTTGAAGAGGCAGATATTGAGTATTCTCTATTTGCAGTTGTTGTCCATGTTGGGAGTGGGC CCAACCACGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATT GATGAGTCTGCTGTTCAGACATTCTTTGGGTCATCTCAAGAATATTCCAGTAATACAGACCATGGTTACATTTTGTTCTA TGAGAGCGTTGGCTCTGGTAACTGA
Protein sequence (LotjaGi3g1v0248500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQYYGNNKSITDAEENLLTCLADLFSQISSQKKKTGVIAPKRF VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQFAKNDQETSPPSEKIANGPKNGLANGGVKKEPLVTWVHKNF QGILTNETKCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILV IHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTVEEADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMI DESAVQTFFGSSQEYSSNTDHGYILFYESVGSGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 352 | 352 | 6.7E-194 | – | |
PANTHER | 1 | 352 | 352 | 6.7E-194 | – | |
Gene3D | 1 | 350 | 350 | 1.3E-116 | – | |
SUPERFAMILY | 21 | 349 | 329 | 1.26E-87 | ||
ProSiteProfiles | 23 | 350 | 328 | 58.443 | ||
Pfam | 23 | 347 | 325 | 9.6E-53 | ||
ProSitePatterns | 24 | 39 | 16 | - | ||
CDD | 24 | 348 | 325 | 0.0 | – | |
MobiDBLite | 121 | 145 | 25 | - | – | |
ProSitePatterns | 281 | 299 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi3g1v0248500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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