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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0253300 |
| Transcript ID | LotjaGi3g1v0253300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein, expressed; TAIR: AT1G06400.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E; TrEMBL-Plants: tr|I3T8S5|I3T8S5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0253300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:42722110..42728578) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAACATTCCTATTCTGTTCCCACGATTTTGAAACAAATCCAGCCGTTACAGTACCAGAAAATTCCTAATTTACCAAC CTAACAAAAAAATACAAAAACTTTCTTAAAAGTTACAAATTTTTAAAAAATTGAAATAAATATCTTTCTCCCTCTTCTGG GTGCGTCTCAGTGTCACTCACTAACTTTTTTGAATTTGTGAGAAGCAAAGTTGTGAACGGAAGCAAAAGTAAGCATGGCT GGGTACAAAGCTGATGATGAGTACGATTACCTCTTCAAGCTGGTTCTGATTGGCGATTCTGGTGTGGGAAAATCCAACTT GCTTTCGAGGTTCACCAGGAACGAGTTCAACTTGGAGTCCAAATCCACCATAGGGGTTGAGTTCGCTACCAAAAGCTTGA ATATTGATGGCAAGGTCATCAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTTTGTTTCTTCTTCTTTGATACTT CGCTATTGATTGATTGATTGGTTGGTTGATTTATCTAGTGCATGTTTGGTAATTCTTTTACAATTGATTCCAGAGATAAA ATTAATTTTAGGGAGAAGCTTTTCTAAGTAGCTTTTGGTTTGGGTGCTAGAAATTAGAAAATATAAGCTCATCCAAACAT GCTACTAATCTTTCTCGAAAGTTCATTGATAGTGACCTTTCTATGACAATTTTCCATTTTTCTAAGTCTAGGGAGAAGCT TCTGTAAGTAGCTTTTGGGTGTTAGAAATTATTCTGAGAAAATTTAAGCTCATCCAAACATGCTACTAATCTTTCTGTAA AATTCATGGATATGTGACCTTTCTGTGAAAATTTTCCATTTTTCTATTTCAAAAACAAATAAAATTAAGGAAAAAAATGT TTGTTAAAAAAACCCCTTGTTGATTTAGTGTTTGGAAGTGTAATTTTATTTATTTATTTAGATGAAAGTCAGATATGAGA TTCTTGTAATTTAGTAATGAGATAAATATTGTTTATACCCTTTGTCAATAGAAGGGACTGGAGTTTGTTTGTGATTCCAC TCGAGGATTTTAAGGATGTTAGTGCTTTTATCTATGGTCTGTGGCTTTGTGAACTATAATAACTGCTTTCTTTTCTAAAA CGAGGTGTAGGATTGATGTCATGTAAGACACCACTATATGATGAAGATTATCTTGCTTTTTTCTTTATGTACCTTTGTGC TTTCAACTGAATTTTGTGGATTTATGAAGCTTGCCTAAGCTTATGGTACTATCGTTTTGTGTTTAGTCATTTGATGCTTT ATCACTGTATAGTACATAAGCTTATTTGAGATGTTATTCTAGCTCATTAGCTGTTGAATTTAAGCTGGTGTGTGTAATAT ACATAGATTGATTTGTATACTCTAGGATTTTCAGTAACTTATTGTTCATATGGTCAAAACTTGCCAAATCAAATCTTTTA TTCTCTTTAACGCTTTGCTATGGATATCTTGATCTTAAGGTTCATACTTTCATGGTCTCTCACTTCTTCAACTCCAACCA CTTTTATGTTCCAGTTGCTTAATATCATTTTTGGCTTCTGTCGTTTGGAATTGGTAATCTGAGTCAATATTTAGTGTTCA TTTGTTATTATTAGGTCCACTGTTCATCTTAATTGGCTCTCATGGAAAACCATGGGGTGTATTCTTGCGTGCTGTCACTG AAACTTTGACCTGAAACCAAATCAGGTCTTTTCGTGTAATTTGCTTTATATCACCCCCCCCCCCTGGTCAGCTAAAATGC TAAATCAAATACAGCATTAGATCAGAGATCAATAAAAGAAAATATAGAAAAGCAGGGCTTATCCAAGCTTCTACAATTTT TGATAATTATGTTGCCCAGTGTATTAACAGTGCCAATAAACCCGTTGCGTTGATTGCTGCCATTAGTGAGACATTTTTGG TTTCTTAGATCATTTAATATGGGTCTTGATTTGGTGATTTGCTTGGTGATTGATAGAGGTCCAGGATTGTGATTTGCTAT TTGGTTCTGTTTTTCTAGTTGCAAAGTTCTGATTAGGGTTGTGATTTGCTATTTGATGCTGTTTGTGCCTCACACAGTCA TAAGTACAGATGCTGTTAAATATTAGGAGATCAATTTGATAATGATAGTTTTTCGAGATTTTCTTCATCATATCTTCTAG CTTTCCTAATTTTGAGCACACATTAACCTTTCTGAACATAAGAATCAATAAAACGAAAATGTATCCCCATCCTTTTCATG TTACCATTTTCATCGTGAGCATTGCCTACTTAAACTTGAAACTTATCATCGTTGTGGACCTGTAGCAAAATTAGAAGAAC ACACATTTGCTAATTTGCTATCATTATCTTTATCACAACATAATATTGTCAGCAGAAGCCTAAATATAAGTAAAGCTAAG GAATAAAGAGATGGTGAAATCCTGTGCATGAAATTTATCTCTAAAATATCATTTCGTGGCTAGGAAAGTGATGAATGATG ATACAGTTGTTGGATGGGTGTTTCTGATGATGAAGGGATTCACCTTAGTAACATTTGCTTAATCAGTTATTTGTCATGCA AATTTTGGAACTCTTAACATGTTTCTAAAGGAAAGATACGACAGTATTTAAAAGTGCTCAGTAATCTAAAAATTTCTCTT TATTGATATTATTAGTCATAAATTGTGAATCCAATAATCATCTCACTGGAGAGGTGAAATATTACATTTCTTATTTCTTT TACAGCAAAAATGATGCTTCAATTTCCTATCAATCAAAATGATTAGTGAAAAGTTATAAACCAGGGCATCTATGAAGTAT TATTTTTTCTACATGTATAGGTTAAAATTGCCCTTGAGGAGATTCTAATTGCATGTCATTTTGAGGTTTAGTTCCTTTTC ATCTGAGAGAACTATATAAGAGCACTAGGTAACAAGAAGCTGAACTTGTATTGTGGTTTTCTTTGCCTTTTGGACTTTTC TAGCAATTTGTATGCTACTGTACTTATATAATACTTGGTGTGGATATGGCTAGGGTACAGCTGATTAATTTCTTCACCTG TATCCTAGCGGATAATTATCTATATGATACACATAACAGATATATGGAAGACAGAGGGTAGGTGCTGCTCTGCTGGTCAC TGTATTGGCACTAAATCCCACTAAATAATAGGAGGTTCCTAAATTGAAATATATCTCCTCTACAATTGGTTATGTGAATC ATATGATATAATGTTGAGTGAAAAAAATGAAGATAGTTGGCTTCCCATCTAGATCTAATGAAATTCACTTCTACTCAATG ATAGTCTTTCAAGGCAACATTTTTCCAGCCAAATATGTTATGCTGATGTTGTTTTAACTTGTGAAGCAGCATATTCTAAT GGTCTACAAGAAAAAAAATATGAGGGATGTATATGCTAATATAAGAGTATGACTATCTTTATGGCAGTGTTTTAAAGCTC TGTCATTTTTTACTTGCCTGTGCTATTACATAATGGCCTTGACTTTCACTTTTAATTTTTATTTCTTTCTTCCTTCTTGA AATGTTGTTAGCTAACAACTAGGGGACATATAATGGGGTGAAAGCAAAGAGTAAGATAAGATGGAAATTAGTAGAGGCAA AGCTTTTATCTTTTTTACTTTTAATTATTTGCTTTTGGTATCTGAATTTGAAGGTAATCCTTTGAATTCTATTACAGACC TGTGATCAAATCGTGCCTCCAACCATCCCTTTCCCCAATTTATATAGCTTAAAATCTAAAGGGTTTTGTGGATCAACTAT CTACATGAACTATGTAAAAAAAATTTGGTATCAAGAAATATTACTTGCTAATTGTTGTATTCAGGTAGTATTATTGGGTA GATAGATTATAATGGGACACAACATGTATTTTGTTCAATGTTTAGTCAATCTAAAAAATAGAACAACGGGACTAAATTTT AAAGAAATTGGTATATTTTGGTTTCACTAAAAATGTGGAATAAAAGAGTGGAACAAAACAATATGTTCTTTTTGGTATGC TGATGGAACAGCTTCTGTTCTTTTCTTTTTGGTTCTACCTTTTTAGTGGAACTTGGTGTACTAATTTTTTACCTTAAAGT TATAATTCTTTTATGCTCCAAATTCAGAAGAAAAGTAGAAAACTCACGTGTTCTGTCGCTATCTTATTTGTTTGCGCGAA GTGTATGTACCATACCAAAAGGTTGTAATCTACAACAGGTACAATATTTTAACTACATTACAGTTGATAACTGTTAAATT CTTATAAAACTTTCTGAATTCCTTCTATATTTTCCATGTACATTTCCCTTGGAGGTTCACTGTGTAACTGTCAACCTTGT TTGTAGATGAGGAGCTTGATGGAATCTTACTTCTTTCTAGACTTCTTTTTTTACCCCATAAATTCTGTTAAGGAAAAAGA AATGGCAGCATTCAATTTCTATTCAATAAAATGTCAAATGATGAAACAGAGTAGGTTCTAAATTTGAGATGCAGTGCACT AAAAAGTATAATGTAATACCACACTGAAATGGTTACCGAAATGATTCTATGACTCAAATTGTGTGTTTGTAATAGGTACC GTGCCATTACCAGTGCTTACTACCGCGGAGCTGTTGGCGCCTTACTTGTGTATGACGTAACCCGCAGTACCACATTTGAG ACTGCTGGGAGGTGGTTGAAGGAGTTAAGGGATCACACCGACCCGAACATCGTGGTCATGCTTATCGGAAACAAGTCAGA TCTTCGACATCTTGTTACCGTCTCCACCGAAGATGGAAAAGCTTTTGCAGAGAAAGAGTCCCTCTACTTCATGGAAACTT CTGCTCTGGAAGCAACCAATGTCGAAAACGCATTCTCTGAGGTTCTTACTCAGATATACCGCATAGTGAGCAAGAGAGCG GTTGAGGCTGGTGACAGGGCAAGTACTTCTGTTGTTCCATCCCAGGGACAGACAATAAATGTGAACGAAGATTCTTCTGT TTTGAATAGATACAGATGCTGCTCAAATTAGATGCTTTATTAGAGGCAAGTGGTTTTCATAGCCTGCATCAATTTGTAAA TGGTTACATGTGATTGGTGATATATGATGCTGTAGAATAAGACTAGTCTTACATATTGTTTGGAAAATGCTTACATGCAT CTATGCAGGATTTGTGTTTCTTAAAACGATGTTTCCAAAAACGCATTTGAAACAAGTCTGTTTATCTAAATTCCATAGGA CCATTGTTGTTTGAGGATCTTAATATCTGCTATGCTTGTAATGCTACGACTATGGTGCAAATGAGTTTAGTTTTCTGTAT GAGCAAACCACCATTTTCTCCTTTCAAAGATATTAGGTCGGTCACTTTAGTTCTTGATACTTGAAAATTACATCATTCAA TAGGCTTTCAATAGTTATCCTAACAAATCTCTCACCTTCCTTCAACTTTTGGTCCTCATATTTGTCAAATGTGAATAGAT AGGTTGTGGACTAACATGAATGATTGAAGATGGTTCTGGGATTTTTTTTGTGAAATAATTGTTTTCTCATTATGTTTTGA GGATAAAGGTGTCAGATTGGTGATTAGCTTTGTAATCACGTTAGACCAAAAGGATTCATATTGATTATGAAGCTGTAAAC ATAGTCATTACTAGATTGGAAGTTCAGTTTCATTGTGGTTATGATTCTTTTTTTTTTTACAGCAAACATAAATATTCCAT TAATCAATAAGAGACATGTCTTTGAGTACAAATGATTGAATGCAAAAAGGAGTAAACCCAACCCAAGCACTATTTTCATT TTCCAAAGAGAACCTAGATAGGTGATGGGCTACCATATTTGCATTCCTGCTAATATGAATAAGGGAAAAGGAACAGAACC TACAACTTAAACCCAATATATCTTGCAGAATATATTTCTGATAGGAACCATGTGAGCTTTTATGCAACACAACATTTACT ATCCTCTTGCAATCCGATTCTACAATGACAGATTGGAATCCATGATTTAGAGCTAATTCAAGACCAAACATTGTGGTTAT GATTCTTGATATATTCCCATCGCTGAAGTTTCATTCTTGAGAGAATTACATGATGATATGATAATACATGTTAATCGAAT GTGGCAAATATGTGTTCAAAATTATTGTAACATTTCATTGGGAACAACCCTATTTTTATCTGAGTTTTGCATGCTTTTTT GCATTAGTTCTTACATTAAAGAAATACGAATAAAGGTTATCAACCAATTTTTTTAGAATACTAATATGTCTAACAAAAAT AGATTCCAATGTGACTAAAAAAGTGAATGGTCAATGATACTTGTTCATATTTCTTCACAATAGACACACATATGAATAAT CATGTCAAGTCCACATACAATTAAAAAACCCAGCATAATTATTTATGGTAATGTTGTGCAAAAATGGACATGAGCTTATT ATGTATCAAGAAAGTTTGACAACTTTGGACAAAAAGTACATTTATATTTTAGAATCTCTAATTTAGTCA
CDS sequence (LotjaGi3g1v0253300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGTACAAAGCTGATGATGAGTACGATTACCTCTTCAAGCTGGTTCTGATTGGCGATTCTGGTGTGGGAAAATC CAACTTGCTTTCGAGGTTCACCAGGAACGAGTTCAACTTGGAGTCCAAATCCACCATAGGGGTTGAGTTCGCTACCAAAA GCTTGAATATTGATGGCAAGGTCATCAAGGCTCAGATTTGGGATACTGCTGGACAAGAAAGGTACCGTGCCATTACCAGT GCTTACTACCGCGGAGCTGTTGGCGCCTTACTTGTGTATGACGTAACCCGCAGTACCACATTTGAGACTGCTGGGAGGTG GTTGAAGGAGTTAAGGGATCACACCGACCCGAACATCGTGGTCATGCTTATCGGAAACAAGTCAGATCTTCGACATCTTG TTACCGTCTCCACCGAAGATGGAAAAGCTTTTGCAGAGAAAGAGTCCCTCTACTTCATGGAAACTTCTGCTCTGGAAGCA ACCAATGTCGAAAACGCATTCTCTGAGGTTCTTACTCAGATATACCGCATAGTGAGCAAGAGAGCGGTTGAGGCTGGTGA CAGGGCAAGTACTTCTGTTGTTCCATCCCAGGGACAGACAATAAATGTGAACGAAGATTCTTCTGTTTTGAATAGATACA GATGCTGCTCAAATTAG
Protein sequence (LotjaGi3g1v0253300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITS AYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEA TNVENAFSEVLTQIYRIVSKRAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 217 | 214 | 1.3E-120 | – | |
| PANTHER | 4 | 217 | 214 | 1.3E-120 | – | |
| SUPERFAMILY | 9 | 179 | 171 | 2.07E-57 | ||
| ProSiteProfiles | 9 | 216 | 208 | 35.226 | – | |
| CDD | 11 | 175 | 165 | 1.08758E-126 | – | |
| Gene3D | 11 | 200 | 190 | 2.4E-66 | – | |
| SMART | 11 | 177 | 167 | 3.0E-27 | – | |
| TIGRFAM | 12 | 170 | 159 | 1.9E-37 | ||
| PRINTS | 14 | 35 | 22 | 6.4E-43 | – | |
| SMART | 14 | 177 | 164 | 2.2E-108 | – | |
| Pfam | 15 | 175 | 161 | 2.9E-60 | ||
| SMART | 16 | 173 | 158 | 1.4E-11 | – | |
| SMART | 19 | 217 | 199 | 3.4E-5 | – | |
| PRINTS | 37 | 53 | 17 | 6.4E-43 | – | |
| PRINTS | 55 | 77 | 23 | 6.4E-43 | – | |
| PRINTS | 117 | 130 | 14 | 6.4E-43 | – | |
| PRINTS | 152 | 174 | 23 | 6.4E-43 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0253300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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