Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0254200 |
| Transcript ID | LotjaGi3g1v0254200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G22690.2 LOW protein: PPR containing-like protein; Swiss-Prot: sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690; TrEMBL-Plants: tr|I1JMN6|I1JMN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0254200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43112085..43118757) extracted from Lotus japonicus Gifu genome v1.2.
CAACATAACTACCATATGAATGAACCTGTCACTCCCATCCCAGGATTAAACTAAGATGATTACAAGCATTTCCAACATCT CTGATGCTGCTTTTCCATTCGTTCATACCTCAATTCAAAAATCCCAAAATTCTAATCAGCACCAATCCCCCACTTTGAAA TTCACTCAATTCAAAGCAAAAGAGATACAACCACTCCAACCAAAACGAAATGTGCAGTTCAACTTGGACCAAACACAACA CATCCATGGCCACTTCATCAAAACCTGTTCCAATTCCAGTTTTCAACTCCCTCTTCCTGCACTTGAATCCTATTCAAGTG GTGCAACAATTTACAGCTTCCTCCTAACATCTTACATAAAAAACAATTGCCCTGAAGATGCAGTGAAAATCTATACCTAT ATGCGTCGAGCCGACACTGAAGTGGATAACTTCATTGTCCCATCAGTTCTCAAAGCATGCTCTCTCATACCTTCATTTCA GCTAGGACAAGAGGTGCACGGTTTTGTTGTGAAAATGGATTCCATAGGGATGTTTTTGTATGTAACGCGATAATCATGAT GTATGGCGAGGTTGGGAGCCTGGAATTTGCACGCCAATTGTTTGATAAAATGGTTGACAAAGATGCTGTTTCTTGGAGTA CTATGATTAGGAACTATGGTAGGAATGGGTTGCTTGATGAGGCATTGGATCTTTTGAGAGATATGCGTGTTGCGGGAGTA AAGCCTAGTGAAATTGCAATGATAAGCATCATTCATGTCTTTGCAGAACTTGTTGATTTGAAATTGGGGAAAGCCCTGCA TGGTTATGTAATGAGGAATAGAAACTGTGGGCAATCAGGGGTTCCTCTAAGTACTTCTCTGATAGATATGTATGTCAAAT GTAAGAATTTAGCTTATGCAAGAAGTGTTTTTGATGGTTTTTCTGGGGCTAGTATTGTTTCATGGACGACTATGATTGCA GGCTACATTCATACCAATAATTTGAATGAAGGTATTAGACTTTTTGTCAAAATGCGAAGGGAGGGTGTGATTCCAAATGA GATTACAATCCTTAGTTTGGTCAAAGAATGTGGCACAGTAGAAGCTCTAGAATTTGGTAAGTTGTTACATGCTTTCACTT TAAGAAATGGGATTACCATTTCTTTGGTTCTGGCCACTGCTTTTATTGATATGTATGGTAAATGTGGTGATTTTAGAAGT GCGAGATATGTTTTTGATAGCATTGAGAACAAAGATTTAATGATTTGCAGTGCCATGATTTCGGCTTATGCGCAAACCAA TTGCATAGATGAGGTGTTTGATATCTTTGTCCAGATGAATGATTGTGGAATAAGGCCAAATGAGATAACCATGGTTAGTC TCCTTGTGTTATGTGCAAAAGCTGGATCCCTTGAAATGGGTAAGTGGATCCATTCTTACATAGACAAGCAAGGGATTAAA AGAGACACGAAACTTAAAACGTCTTTGGTTGACATGTATGCAAAGTGTGGAGACATAGATACAACCTATAGACTTTTCGC TGCAGCCACTGACCGAGACATTTTGATGTGGAATGTCATGATATCGGGTTGCGCAATGCTTGGTGATGGTGAGGCAGCAC TAGAACTCTTTGTAGAAATGGAAGCACAAGGGGTTATCCCTAATGACATCACATTTATTGGAGCTCTTAAAGCTTGTAGT CATTCTGAATTGTTGCAAGAGGGGAAGAGGCTCTTTCATATGATGGTTCATGACTTCGGATTAGTCCCTAAGGTAGAGCA CTATGGATGCATGGTGGATCTTCTCGGTCGAGCCGGATTGCTTGATGAAGCTCAGAAACTAATCATTGACATGCCCATGA GGCCAAACAATGCTGTATTGGGATCTCTGCTTGCTGCATGTAAGCTTCACAAAAATGTTAAACTTGGGGAATGGGCAGCA GGACAATTTCTCTCATTGGAATCCCACAAGTGTGGATATAATGTTCTTATGTCAAACATATATGCGGCAGAAAATAGATG GGGTGATGTTGCCGATATTAGAAGAGCTATAAGGGATGCAGGAATTAGTAAAGAGCCAGGTGTCAGCTCCATAGAAGTGA ATGGATCAGTTCATGAATTCATAATGGGAGATAGGGAGCACCCGGAAACTAGAAGAATTTACGAAATGGTCACTGAGATG AGAGAAAAACTGGACAATGTTGGATACACCCCGGATATATCTGTTGTGCTTATGAACATAGATAGGGAGGAGAAAGAAAC TGCACTTAACTATCACAGTGAAAAACTGGCTATGGCATATGGTCTCATTAGCACAGCTCCTGGTGCTCCAATTCGAATTG TAAAGAATCTTAGAGTTTGTGATGATTGTCACAATGCAACCAAGTTACTCTCCAAGATTTATGGGAGGGAGATAATAGTG AGGGACCGGAATCGTTCTCACCACTTCAAGGAAGGATCTTGTTCTTGTCATGATTATTGGTAAAAACTGTGCAAAGGTTA AAGATTTCACATATATAGGCCGTACATATTTGCTCAAGCTTCACAAATAATGCGGTTAAAGACGTAAAGCATGCTTTTCT TTGTCTAATATACTTTAGAAATTAATTACTCAAATTAGCAAAATAGTGTATTAGATCATAAAACTGAGATAGTTTTTTTT CTATTTTATGTTAGTAGTTAAATTTTTTAGAAGTACATCATGAGTTAGTAAGTTCCCGAGAGTCTGAGACTATATAAGCA TGCATCTCATGTATAGTAAGCTTCTGCAATGAATACAAAGAATTTTTTCATCATGTATGAAAGGAAGAACAAGAAAGAAA AATTGGGCTACCAGAATCTAGAGCTTGAATACATTTTCTTTCTTGTTCTTCCTTTCATCATGCTTCCACGATAATGTCAA TGCACGATCATCTCGTCAACACATTGACTCCCCTCCCCCGTTTCTTAATCCAAATGAAAGTTGACTGGAACTCAAATTCT GAGGAAGAACAAAACCAGCTATTTTCTAAAAGGCTTAAATGCACTTTTGGACCCCCCAAATTTATATTTTTTGTGATGGT TGACCTTGATCTTATTTTTCTACGAACTCCAAGCAAAAAGACACTACTAAAAAATAAACATTTCACATCAGAGTTTTCAC ATAGGTGAATGAAATATCTGATGTAAAAGATAACGGCAAAGTAACTTTGTACGTTTCCCTCTCCTTCTCCTAGACCCAAG GCCACCGCGCGAATTCCATTCTGAATCGCATCACATTCGTTGGTCTTCTCTTCTCAGGTGCTCTTCGCAAATTTGCTATC ATCTCTCTTGCTCTCTTCATTTTCTCGGAATAAGGTAGATTTTCTTGCAGTCCCTGTCGTTGATTTCTCAGTTTCTGCTT TCATGGAATGTCCAACTAAATAGGTATGTGTTAACTTTTGTCTGTCTCTCAAATTTTGGGGCCCTAATTGCCATTTCTGT TCATGTTAGGCTCTTAATTTTGGCTTGTTTAACTAGGGTCTATAACTCTATATGGTTCTTATTATGTGTTGCTGTAACTT GCAATCAGTTTTCATAGTGTGAAAAGTGTACATGTGTAATTAAAACACAAGACAATGACAACTTAATAACACAATCAATG ATAGGAGAGTCTATCCCAATAAACTGAATGATTTCTCTAAGATTGATGAACAGTTATTACTAGTGTTTGATAAATGACTA TTTGGATTTACCATATATTGCACTACTTGTGATTTGCTAATTGGAATGTAATGATGAGTATTAATCAATCTTAACTCAAT CTTAAAGAGTTTTGATCAGTTTGATTCTTATCAATCTTAACTCAACTTATGGTGACTTGGTGAATCAACATTTTGCATGT ATATATATTCATGACCAAGCAATCAGATTAGTTTTTTTTACTTGTTTGACACGATTAGCCAATGTGATTTCCTTTCTTCA CCTGATGAAATAATTATGTGCTTTCTATTGAGTCAAAGAGAGTTTGAGGAAACCAACTTGCTGGCCAAAAAAATTGGGAT AAAAATGTAAGGATATGTCAATTTGGGTGTTCAAACTGGTTCTGTCAGCTTTTGTGGTATCTGTAAATCCTAATCTCAAT TCTCAGCATGCTATCCTTTTCTGTGTTAGTGATGATTCATATTACCACTTTTAACTCACAGCCATATCGAATTTGTGAAT TGCAAGATATTCGATGACATTTTTTTGTGGTTGACATGTACTAATATACCCTTTGTTTGTCTCTCTTGTGCAGTTCTTGT TTTTTGGTGCAGCTTTTAAGGAGTTTGGTAAGAATTTGAAACAGATAGATGAATTTTAGCGAGCCTGAGGGGTGTGGCTA AGCATGGTCCCGAACTTCATTTTGTTCATTTCTATATAGCTGTCCTACATATGTTAAAGCATCTCTAATTTATTCCTTGG TTTTGGTAGTATCTTCTTCTTTCTCACTGATTAATTATCAACGTCTTCATAACCATAAATTAGTTTCAGTTGAGTTTTGG TAATCTTTTGATCCATCCATATTTATGGAGCTCTGTACTGGAAACCAATATTCAACAGTTTTGTCAATTACCATTTAAAA AGAAAATCATTGTCAACCTTGCATGATCTGCTGATATACGAAAAAGGTTTCATGTCTTTAATACGATTATTTAAATTCCA TTTCCCTGTGCATGATCTGCTGATGTAGGCTGAAGACAACCTTGCCCAGGCTTTTTGTTCAGTGGGAGAATTACAATTAT CTTTAGACCATTGTAAATCATCTATCCAGGTAAGACTCTTCTCAATAAGCCTACTATCTTACAGATTTGCTTGTTTCTGC CACTTTGCAAAAGCAAAAGCAAATGGATGAGGGAGGAGAGATTTGTGTTTTTGACATATATTTGTCAGAATTGTTTCTGT AGAGCTAGGACTTATCAGTTATCAGGGATCTTTTTTCAGTAGTAGAAATTTAAATAGTTGTGTGTAATTATGACATCAGT AGGTTTCTGTATTGTGCTGAGAATTGAGTATTTCAAAATCTCTATACTGATGCACTTTACTGTATTGAGAAAGTCTCCTC TTAACACCCACTTGCTATTTAATTTGACAAGTTTGGTGATCATCTTACTACAGGTGATCAAGATAGTCAAGTAGTTCTCT TCGCATTGATACAAAAGATGTATGGATGATTTCTCCTTCTTCCATCTTTTTTTATTATTAATCAAACTTAGTTTTTGAAA GATTATATGTTTCACTATTTTAATATCAAAGTTCACTCTAAAATGTGGAATCAAGGATCAAGAAGGGATTTGGAGAGGAA GGAGTATTCTATTTTTTAGCAGTCACTTGCTGGATTTGGAAAGCGAGCTTAAGGATTTTAAGATGCATAGGATGGAAAAC ATGGTAATATCTTTAAAACTAATCTATCGGTGTTTCTTTTCTATATATATGAGCTCCTGCAAATCAAGCTTCTCTCAGGT CAATTTTGTGGACTGATGTGAATTTGCATCAGTGCTATGGAGCCTCAACTTAGAAATGTGATCATCCTGTTGAACCTTGA GGGAAGCTTGCTTGACTGCATGTTTTATGCCTATCTGGCATTGGCTTAATTTCCCATTCTTCAATAGTAGCTAACTCCCA TTATACTAGTGGAAAATTTATCTATTTTGACAAATCTTCAGTGTGATGTTCATATATTTTTCTCATGTGAAAAATTTTAT GTACAAGGAGGACCACTGGCCCTATAAGACGTGCTAAAGGTGGTTGGACTGCAGAGGTTTATTTATCAATTCTGCTACTG GAGGTTTTCTGTTTCTGCACTGAATTGATGCATTTGATCTGGTTTGCTTTTTCTACTGATATACCTTTGCTTTCATTGTG TGAGTGAGTGGAAGATGTCTGATACTTGCTGCTGCTGATATGCTAATGATTTCATGTCTTCACCATGCTTGCTGCCTAGA ATTTTTGTATACCTTGCTATCTGTCCTCATTAGCAATTGATCACCTTTATGCATACCTTGCTATCTGTCAAAGCAATTCC AGGTTCATAATCAACTTTTATATTTTATGGGCTTATTATTTAACAACTAGCTCAAATTTCACCACTAGAATTTTTGTTTC AGATGAGGACAAGGAACTGGCGAAACTCCTCACTGGTTACCAAGACATGGTTGGGTTTTTAAATGTGCATAAAGTTGCAC GGTTAAAACTAGTGTCTGACACGTGTTGTGTCTGTGTAGTATGTTGATGTTCAACTCCATATTGATCAATTGCAGTGTCT GTGTAGTATGTTGATGTTCAACTTCATATTGATCAATGGCAGTTGTAATTTTCCCCTTTTATACTTTGCCATTGAATTTG AGGAGGAAAATTGAAGACTTTTGTAGTGTTGCAAGGTGTTTTGTATTCCTTTTCCTGAATCTATTTATCGGAGAATGGGG TATAAGAAAGCTAAATCTCATCCCCAAATTAAGAAAATATATGGTAATTAGTAACATATTATCAAATTTAGAATATATGG TAACTTATATTGCTTGATATGAGAATTGCTATATAGTATGATACGAAACATAAGAACTAAAATTGAATGCTCTGATCTTT TTTTAAAAAGGAAATATATAATTAAAAAATAAAATTGTAATGAGATGTTTTTGTCAATGTATCAATTTAAAACTTTAAAA AACTAAAGGCTGAAGCAAAATGCAAGAAAAGGG
CDS sequence (LotjaGi3g1v0254200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTCTCATACCTTCATTTCAGCTAGGACAAGAGGTGCACGGTTTTGTTGTGAAAATGGATTCCATAGGGATGTTTT TGTATGTAACGCGATAATCATGATGTATGGCGAGGTTGGGAGCCTGGAATTTGCACGCCAATTGTTTGATAAAATGGTTG ACAAAGATGCTGTTTCTTGGAGTACTATGATTAGGAACTATGGTAGGAATGGGTTGCTTGATGAGGCATTGGATCTTTTG AGAGATATGCGTGTTGCGGGAGTAAAGCCTAGTGAAATTGCAATGATAAGCATCATTCATGTCTTTGCAGAACTTGTTGA TTTGAAATTGGGGAAAGCCCTGCATGGTTATGTAATGAGGAATAGAAACTGTGGGCAATCAGGGGTTCCTCTAAGTACTT CTCTGATAGATATGTATGTCAAATGTAAGAATTTAGCTTATGCAAGAAGTGTTTTTGATGGTTTTTCTGGGGCTAGTATT GTTTCATGGACGACTATGATTGCAGGCTACATTCATACCAATAATTTGAATGAAGGTATTAGACTTTTTGTCAAAATGCG AAGGGAGGGTGTGATTCCAAATGAGATTACAATCCTTAGTTTGGTCAAAGAATGTGGCACAGTAGAAGCTCTAGAATTTG GTAAGTTGTTACATGCTTTCACTTTAAGAAATGGGATTACCATTTCTTTGGTTCTGGCCACTGCTTTTATTGATATGTAT GGTAAATGTGGTGATTTTAGAAGTGCGAGATATGTTTTTGATAGCATTGAGAACAAAGATTTAATGATTTGCAGTGCCAT GATTTCGGCTTATGCGCAAACCAATTGCATAGATGAGGTGTTTGATATCTTTGTCCAGATGAATGATTGTGGAATAAGGC CAAATGAGATAACCATGGTTAGTCTCCTTGTGTTATGTGCAAAAGCTGGATCCCTTGAAATGGGTAAGTGGATCCATTCT TACATAGACAAGCAAGGGATTAAAAGAGACACGAAACTTAAAACGTCTTTGGTTGACATGTATGCAAAGTGTGGAGACAT AGATACAACCTATAGACTTTTCGCTGCAGCCACTGACCGAGACATTTTGATGTGGAATGTCATGATATCGGGTTGCGCAA TGCTTGGTGATGGTGAGGCAGCACTAGAACTCTTTGTAGAAATGGAAGCACAAGGGGTTATCCCTAATGACATCACATTT ATTGGAGCTCTTAAAGCTTGTAGTCATTCTGAATTGTTGCAAGAGGGGAAGAGGCTCTTTCATATGATGGTTCATGACTT CGGATTAGTCCCTAAGGTAGAGCACTATGGATGCATGGTGGATCTTCTCGGTCGAGCCGGATTGCTTGATGAAGCTCAGA AACTAATCATTGACATGCCCATGAGGCCAAACAATGCTGTATTGGGATCTCTGCTTGCTGCATGTAAGCTTCACAAAAAT GTTAAACTTGGGGAATGGGCAGCAGGACAATTTCTCTCATTGGAATCCCACAAGTGTGGATATAATGTTCTTATGTCAAA CATATATGCGGCAGAAAATAGATGGGGTGATGTTGCCGATATTAGAAGAGCTATAAGGGATGCAGGAATTAGTAAAGAGC CAGGTGTCAGCTCCATAGAAGTGAATGGATCAGTTCATGAATTCATAATGGGAGATAGGGAGCACCCGGAAACTAGAAGA ATTTACGAAATGGTCACTGAGATGAGAGAAAAACTGGACAATGTTGGATACACCCCGGATATATCTGTTGTGCTTATGAA CATAGATAGGGAGGAGAAAGAAACTGCACTTAACTATCACAGTGAAAAACTGGCTATGGCATATGGTCTCATTAGCACAG CTCCTGGTGCTCCAATTCGAATTGTAAAGAATCTTAGAGTTTGTGATGATTGTCACAATGCAACCAAGTTACTCTCCAAG ATTTATGGGAGGGAGATAATAGTGAGGGACCGGAATCGTTCTCACCACTTCAAGGAAGGATCTTGTTCTTGTCATGATTA TTGGTAA
Protein sequence (LotjaGi3g1v0254200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSHTFISARTRGARFCCENGFHRDVFVCNAIIMMYGEVGSLEFARQLFDKMVDKDAVSWSTMIRNYGRNGLLDEALDLL RDMRVAGVKPSEIAMISIIHVFAELVDLKLGKALHGYVMRNRNCGQSGVPLSTSLIDMYVKCKNLAYARSVFDGFSGASI VSWTTMIAGYIHTNNLNEGIRLFVKMRREGVIPNEITILSLVKECGTVEALEFGKLLHAFTLRNGITISLVLATAFIDMY GKCGDFRSARYVFDSIENKDLMICSAMISAYAQTNCIDEVFDIFVQMNDCGIRPNEITMVSLLVLCAKAGSLEMGKWIHS YIDKQGIKRDTKLKTSLVDMYAKCGDIDTTYRLFAAATDRDILMWNVMISGCAMLGDGEAALELFVEMEAQGVIPNDITF IGALKACSHSELLQEGKRLFHMMVHDFGLVPKVEHYGCMVDLLGRAGLLDEAQKLIIDMPMRPNNAVLGSLLAACKLHKN VKLGEWAAGQFLSLESHKCGYNVLMSNIYAAENRWGDVADIRRAIRDAGISKEPGVSSIEVNGSVHEFIMGDREHPETRR IYEMVTEMREKLDNVGYTPDISVVLMNIDREEKETALNYHSEKLAMAYGLISTAPGAPIRIVKNLRVCDDCHNATKLLSK IYGREIIVRDRNRSHHFKEGSCSCHDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 14 | 110 | 97 | 1.3E-21 | ||
| PANTHER | 20 | 106 | 87 | 5.6E-116 | – | |
| ProSiteProfiles | 25 | 55 | 31 | 8.857 | ||
| Pfam | 28 | 55 | 28 | 0.0058 | ||
| TIGRFAM | 28 | 55 | 28 | 0.002 | ||
| ProSiteProfiles | 56 | 90 | 35 | 13.285 | ||
| Pfam | 58 | 88 | 31 | 3.5E-8 | ||
| TIGRFAM | 58 | 92 | 35 | 2.6E-9 | ||
| PANTHER | 97 | 214 | 118 | 5.6E-116 | – | |
| Gene3D | 117 | 210 | 94 | 2.4E-14 | ||
| ProSiteProfiles | 159 | 193 | 35 | 11.433 | ||
| Pfam | 159 | 205 | 47 | 2.2E-9 | ||
| TIGRFAM | 161 | 195 | 35 | 4.0E-7 | ||
| Gene3D | 211 | 324 | 114 | 4.0E-20 | ||
| PANTHER | 212 | 327 | 116 | 5.6E-116 | – | |
| ProSiteProfiles | 229 | 259 | 31 | 6.818 | ||
| Pfam | 234 | 259 | 26 | 0.19 | ||
| ProSiteProfiles | 260 | 294 | 35 | 10.446 | ||
| TIGRFAM | 263 | 296 | 34 | 3.7E-6 | ||
| Pfam | 264 | 292 | 29 | 3.3E-4 | ||
| ProSiteProfiles | 295 | 329 | 35 | 7.235 | ||
| PANTHER | 313 | 526 | 214 | 5.6E-116 | – | |
| ProSiteProfiles | 330 | 360 | 31 | 6.38 | ||
| Gene3D | 335 | 576 | 242 | 1.2E-33 | ||
| ProSiteProfiles | 361 | 395 | 35 | 12.014 | ||
| Pfam | 361 | 408 | 48 | 4.1E-9 | ||
| TIGRFAM | 364 | 396 | 33 | 4.0E-8 | ||
| ProSiteProfiles | 396 | 431 | 36 | 6.752 | ||
| ProSiteProfiles | 432 | 462 | 31 | 7.191 | ||
| Pfam | 435 | 460 | 26 | 0.015 | ||
| Pfam | 534 | 658 | 125 | 5.0E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0254200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…