Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256000 |
| Transcript ID | LotjaGi3g1v0256000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Receptor-like kinase; TAIR: AT1G78530.1 Protein kinase superfamily protein; Swiss-Prot: sp|Q9SYM9|Y1853_ARATH Receptor-like serine/threonine-protein kinase At1g78530; TrEMBL-Plants: tr|B7FLZ9|B7FLZ9_MEDTR Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0256000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43924657..43927449) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGAAATCCGTTGTTATAGCCATTTCCATAACCATATGCTTCATTGCTTTTGTCATATCCAAGATTTTAATCTCAGT CCTCATCTATAAAAGATGGAGAAGAAAGCAAATGATTTATGAAGATGGTTACACAGGTATGGCAATACAGAGGAAAAAAG GAGTGGCTTCTGCATCAAGATCCTCTCATGTGTAAACTCATGTTGAAATTTTGTATCTATCTATCTATCTATCTGTTCAT TTGTATTAAATAGGTCAGACGTTTGTAATATTTATGCAAAGAGAGATAGACACAATGTTTCACTTCACGTTCTCATGTGA CATGAGAGTTGAGATGATCCTAATCCTGTGTATTCTACTTTACTAACATTCATTGATTATTGATTGGATGATACAGGGGG AAAGATGGTGATATTTAGGTCTTCAGTGCTTAAATCTCTGAAATCTGATACGGTGTTAAAGAAGACACAGAAACTGAACA ACAAGGACATCATTGGGTGTGGTGGTTATGGTGTGGTTTATGAACTAAAGCTGAATGAGTCCACAGCCTTTGCTGTGAAG AGGCTAAACCGTGGAACTGCAGAGAGGGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGATATAAAACACCGCAA CATTGTGACTCTTCATGGATATTACACAGCACCACACTACAATCTTCTCATCTATGAGCTAATGCCCAATGGAAGTTTGG ATACCTTTTTGCATGGTATCTATTTGTTAGTTTTTACATTGCATTCTAATAGTTCTTAGTAGGAGTCAAAAAGGGCATGA AACGAAAGAAAATCATGAACATTTGCAAAATAAATAGCCATTTCATATCTGTTAAGGCCACACATTGAGTTGATTGTAAA GAGTAGAGCAAACCTCACCCCTGACCTAGTTTTTCAGGTATAAATATTAGAGACACCCATGTATGGGCCCACCACATATG TTTATTTCTTTAAATTCACACTGTAGATGTCCAACCATGGGTGTGAGTAGGTGTGTTAAGGTCTGACATTACACTGAGTT TACTTTTTTGGTAGTGCTAGGCATAACCTCAATTCTAAGAATATCTTCTGATGCAGTATATAGTTTTAGCTGTTGACCCT CTTTTCTTCCCATTTTTGCTCTAACTAAGTATAGTGAGAAGCTAAGTTGGCGGAAATGATGGACTTCTTTTGTTATAATG ATTATTGAACTTCTTTTTCTAATAGCAAAGTTGAAAATGGTGCAGGGAGATCAATGGACAAGAAGGTTTTAGATTGGTCA ACCAGATACAAAATAGCTGTAGGTGCAGCAAGAGGAATATCATATCTCCACCATGATTGCATCCCCCACATTATCCACAG AGACATCAAGTCAAGTAACATATTGCTGGATCAGAATTTAGAGGCTCGTGTTTCTGATTTTGGATTAGCCACGTTGATGG AACCAAACAAAACTCATGTTTCAACAATTGTTGCAGGAACTTTTGGATACTTGGCACCTGGTATGGTATAGATACAACTA GCCTAAACACAGTTTTTCTACCTTCCATACTACTTTTATGTGTTGCAAATTTGATTGTTGTTGTTTGTGTGCAGAATATT TTGATACAGGAAGAGCAACATTTAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCTTTTAACAGGGAAAAAA CCCAGTGATGAAACATTTATGGAAGAGGGAACCAAGCTTGTCACATGGGTAAGAAAGGAATACTTGGAGATTGTTTTCTT TGATATTGTTCATCAGAAAAGTTTTAGATCAATAATCTATATAGTATATAACTCAATTTTTAAACAAGTATCATTTATCA ACTATAGCATTCTCAGTTCTCACATTGATTTCATAAATTCATAGTTTGAATGGCAGAATAAAGCATATCATCATTCTATT CAAATTTAAACGTTAGAAATCATAGAGTTTTAAATCAGCAGAACCAAGGAAACCAAAAAACATAGAAGCATGAGCTTTGA ATGTAAATCCATAAGCCTAAGGAAGAGTTTATTGAGTTTATGTTATAGTTTAAAGCCTTATGCAAGTGTTTGCAGAGCCC TTGTAATAGTAGCTTATGACCTACTTATAAACTGTTTTGAGCTTATATTTATAAGCTTCCTACATATAGCAAGTTTTCAA CTTACTTTAATACACTTATTATCATAAGTGTTTAATTAAGATATTTACCCAAACATACCCAAATCTATACACAGCTGGAC TACGGGTAAGGAGTGCTAACACCATTTCAAGACATCCGCTCCTACTCGATAAAATTCATGAGGATCTCACTAAATTGGGA GTCAATCAACAAATTAGGAGTGAGACACATATAATTAAGAGACTGTTATAAAGTGAATAATCACCCCAATAATTCCCCTA GCTGGAGCAGTAAAATAATACATCTCTATTGACAATTAAAATGGAGCAAAATTATGATTTTTATGACAGCTACCAGCCAG CCAATTAAAATAGAACAAGATTTTCTAGCTCAACTAATATTACTTAAATTCTGGACATATCTTTGGAATGAGGACTAACT TCCAATGATTCTGATACTAATGGTATCAGGTGAAGGCTGTTGTTCGAGAGAAGAAGGAGGAGTTAGTTCTTGATAGTAGC TTAGGGTCTTGTCCGGAGCAAGATGTCAACAAGGTGTTCAACATTGCAATGATGTGTCTTGAAGCAGATCCCTTGATGAG GCCAACCATGGCTGAGGTTGTCCTCATGCTTGAGCAAACAGAACCAGAAAAACCAGTTACAGCATCCTCATGA
CDS sequence (LotjaGi3g1v0256000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAATCCGTTGTTATAGCCATTTCCATAACCATATGCTTCATTGCTTTTGTCATATCCAAGATTTTAATCTCAGT CCTCATCTATAAAAGATGGAGAAGAAAGCAAATGATTTATGAAGATGGTTACACAGGGGGAAAGATGGTGATATTTAGGT CTTCAGTGCTTAAATCTCTGAAATCTGATACGGTGTTAAAGAAGACACAGAAACTGAACAACAAGGACATCATTGGGTGT GGTGGTTATGGTGTGGTTTATGAACTAAAGCTGAATGAGTCCACAGCCTTTGCTGTGAAGAGGCTAAACCGTGGAACTGC AGAGAGGGATAAAGGTTTTGAGAGAGAGTTGGAAGCAATGGCAGATATAAAACACCGCAACATTGTGACTCTTCATGGAT ATTACACAGCACCACACTACAATCTTCTCATCTATGAGCTAATGCCCAATGGAAGTTTGGATACCTTTTTGCATGGGAGA TCAATGGACAAGAAGGTTTTAGATTGGTCAACCAGATACAAAATAGCTGTAGGTGCAGCAAGAGGAATATCATATCTCCA CCATGATTGCATCCCCCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGCTGGATCAGAATTTAGAGGCTCGTG TTTCTGATTTTGGATTAGCCACGTTGATGGAACCAAACAAAACTCATGTTTCAACAATTGTTGCAGGAACTTTTGGATAC TTGGCACCTGAATATTTTGATACAGGAAGAGCAACATTTAAAGGGGATGTTTACAGCTTTGGAGTTGTGTTACTGGAGCT TTTAACAGGGAAAAAACCCAGTGATGAAACATTTATGGAAGAGGGAACCAAGCTTGTCACATGGGTGAAGGCTGTTGTTC GAGAGAAGAAGGAGGAGTTAGTTCTTGATAGTAGCTTAGGGTCTTGTCCGGAGCAAGATGTCAACAAGGTGTTCAACATT GCAATGATGTGTCTTGAAGCAGATCCCTTGATGAGGCCAACCATGGCTGAGGTTGTCCTCATGCTTGAGCAAACAGAACC AGAAAAACCAGTTACAGCATCCTCATGA
Protein sequence (LotjaGi3g1v0256000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKSVVIAISITICFIAFVISKILISVLIYKRWRRKQMIYEDGYTGGKMVIFRSSVLKSLKSDTVLKKTQKLNNKDIIGC GGYGVVYELKLNESTAFAVKRLNRGTAERDKGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDTFLHGR SMDKKVLDWSTRYKIAVGAARGISYLHHDCIPHIIHRDIKSSNILLDQNLEARVSDFGLATLMEPNKTHVSTIVAGTFGY LAPEYFDTGRATFKGDVYSFGVVLLELLTGKKPSDETFMEEGTKLVTWVKAVVREKKEELVLDSSLGSCPEQDVNKVFNI AMMCLEADPLMRPTMAEVVLMLEQTEPEKPVTASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 30 | 25 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 31 | 355 | 325 | - | – | |
| Gene3D | 36 | 147 | 112 | 2.5E-20 | – | |
| PANTHER | 48 | 346 | 299 | 9.4E-125 | – | |
| PANTHER | 48 | 346 | 299 | 9.4E-125 | – | |
| SUPERFAMILY | 53 | 344 | 292 | 4.66E-78 | ||
| ProSiteProfiles | 72 | 352 | 281 | 39.976 | ||
| SMART | 72 | 342 | 271 | 9.1E-35 | ||
| Pfam | 74 | 339 | 266 | 4.6E-48 | ||
| ProSitePatterns | 78 | 100 | 23 | - | ||
| Gene3D | 148 | 353 | 206 | 1.1E-64 | – | |
| ProSitePatterns | 194 | 206 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi3g1v0256000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…