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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0264200 |
Transcript ID | LotjaGi3g1v0264200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT5G16650.2 Chaperone DnaJ-domain superfamily protein; Swiss-Prot: sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating protein; TrEMBL-Plants: tr|A0A151QMT5|A0A151QMT5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0264200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:49199496..49200885) extracted from Lotus japonicus Gifu genome v1.2.
CCGTGATTGAGCAGCGATATACTGAACAAAGGGATTCGTCCGTCTTTACGTATCATATTAATCTGTTTTTATGTTCTGCT AATCTTTTGAGCTGAATCACAAAACCCCCCAGTGTGTGTGCGTTGTGCGTCCTTAATACTGAGTCTTTGTTGAAACGATA ATCCTTGGGAAACGACCTAGGAGTCACTTCCTAGTTACTACAGTTTTCTAAATTAATTATTTGTATCGGGTATGACCTCG ATCAAATTTGGCGCCGTTGCCGGGGAGTATCGTCTTTACCAAAGGTTTAATAGAGTTAGTATTAGTAGTATTAGTAGTAT TAGTATTATTATTAGTAGTATTAACAAGTTCGATCTCTGACGCAGGTACTGTGAAGGTAAGGATTAGTGAATTTTGAAGG ATAATTAGGCTGTAACTTCAAACGGCCATATCTTTTACTCCAGAACTCGGAATTCAACATAATTTATATGCTTTTGGGGT AGAAAAAAAATTCCAATTCATCTGTGATGGCTAGCCGTGAGATCGATTCTTAAAAACGCAAAAAAAGGCCTTCCGCCAAA AGTTTTTTTAGGGTTTTGAAAAAAAAAAAATTTACTTTCATTCTTATTCTATTTGGGATACTTAGTGTTGCATGACTAGG GCAAATCCTGGGTTTTTGCATCCATTTATTTCTGAAATAGATCGAGAATTTCATAGGTTAATTAGAGCACGTAGAGCTTT TGTTACTGATCCTCATTTAAGTGATTCTGATTCTGAATTTGTTGCAGTTTCTGAAAACATGGCTGAAGAAGGACCGCGAG AGAGAACACTAAGGGAGCTGGCTGCACCTGATTTCACCTACGAAAGCTTGTGTATCCAGTATCCTGAGGATGTACCATGT GTACTCAAAACTGGACTAATCCATTTATTGCCTAAGTTTGGTGGTCTTGCAGGTGAAGATCCTCATATGCATATCAAGGA GTTTCGTACTGTCATATCCACCATGAAGCCTCCTGAAGTTGACAAAGATCATATATGTTTGAAGGCTTTTCCTCATTCCC TTCAGGGAACTGCAAAGACTTGGCTGTATGACCTGCCTACTTCATCCATTGCAAGTTGGGACGACCTGAAAAGAAAGTTT CTTGAGAAGTTCTTCCCTGCCTCTAGGACAACTTTAATCAGAAAAGACATCTCAGGAATCAGGCAGCTACATGGAGAGAC TCTACATGAATACTGGGAAAGATTCAAGACACTATGTGTGAGCTGCTGTAACATCCCGATCTGACGACTGACCTCACGGT AACAACATGAGTCTTTTCAGTGCGCTTTGTCCTCACTCGCGCACTTCCCGGGAAAACTTCGCAGGAGGTCACCCATCACG ATATTGCTCCAAGGCAAGCACACTTAACCA
CDS sequence (LotjaGi3g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAGGGCAAATCCTGGGTTTTTGCATCCATTTATTTCTGAAATAGATCGAGAATTTCATAGGTTAATTAGAGCACG TAGAGCTTTTGTTACTGATCCTCATTTAAGTGATTCTGATTCTGAATTTGTTGCAGTTTCTGAAAACATGGCTGAAGAAG GACCGCGAGAGAGAACACTAAGGGAGCTGGCTGCACCTGATTTCACCTACGAAAGCTTGTGTATCCAGTATCCTGAGGAT GTACCATGTGTACTCAAAACTGGACTAATCCATTTATTGCCTAAGTTTGGTGGTCTTGCAGGTGAAGATCCTCATATGCA TATCAAGGAGTTTCGTACTGTCATATCCACCATGAAGCCTCCTGAAGTTGACAAAGATCATATATGTTTGAAGGCTTTTC CTCATTCCCTTCAGGGAACTGCAAAGACTTGGCTGTATGACCTGCCTACTTCATCCATTGCAAGTTGGGACGACCTGAAA AGAAAGTTTCTTGAGAAGTTCTTCCCTGCCTCTAGGACAACTTTAATCAGAAAAGACATCTCAGGAATCAGGCAGCTACA TGGAGAGACTCTACATGAATACTGGGAAAGATTCAAGACACTATGTGTGAGCTGCTGTAACATCCCGATCTGA
Protein sequence (LotjaGi3g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRANPGFLHPFISEIDREFHRLIRARRAFVTDPHLSDSDSEFVAVSENMAEEGPRERTLRELAAPDFTYESLCIQYPED VPCVLKTGLIHLLPKFGGLAGEDPHMHIKEFRTVISTMKPPEVDKDHICLKAFPHSLQGTAKTWLYDLPTSSIASWDDLK RKFLEKFFPASRTTLIRKDISGIRQLHGETLHEYWERFKTLCVSCCNIPI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 50 | 204 | 155 | 2.9E-29 | – | |
PANTHER | 50 | 204 | 155 | 2.9E-29 | – | |
Pfam | 132 | 205 | 74 | 2.0E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0264200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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