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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0269300 |
| Transcript ID | LotjaGi3g1v0269300.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G14470.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470; TrEMBL-Plants: tr|I1JH99|I1JH99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0269300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:51875697..51881685) extracted from Lotus japonicus Gifu genome v1.2.
CCTAAAGCAAATAACTTTCAGCCCCGAGCCCTAAAGCTGGGGAGAAAGTGAAGAGGAACGTGATGCACTGCAGAGAACAC AAAGGCTCGAGAAAAGGAGAAGGGAGGGTGTTAAAACATGGGGGCAATTTTGAATTTATTTAGAAAATAAGGAGGTAGCA ATTCAAAGAAGGGTACCGATTCTTATTCCCTTATTATTGTACAATCCAGCATTTCCAATCCTCCGTAACTCTGAAGAAAG TCATATTACTCATCTTTCTGCCGCCAAGTACACCCTCTCCTCCCTACTCTGCCTCCCACCGACGCCGTCTCCGGCGGGGT TCTCTCTCCACCACAAATCTCTCACCGCCTCGACGTCGCCGACTCGTCGTGACCGACGCACCGCACCCCTCTGGCCACGT TTCAATACTTTCTCTCTTCTATTTTCCCGAGAAAGTGTCACCGGCAACTGGAAATTCTTGCAAATCCGACAGTGTTTCGG GCGCCACGAAGAGCTGGTACTAGAAGTGAGCGTTTAGGTGAACACTCCTCTGCTGTGCTATTTACTGTTGGGTTGCCATT TTTTTTATTGATATGATTTTGATCAATCCAACATGAATGCACCAATGTTAAATTGTAAATATGGATGTTGTTGTTTTTTC AATTTTTCTGGAGGAATTCAATGGGAATATAACTAGAATTAGGATAAGAAGAAGGTGTGTTGTTTTGGGGCCAATTACAG TTTATTGGTTCTGTTGAGTGGGAAAAAGGACATATTTGATGGTTCATTTGTGCATATCACATTACCTTTGCTGGAAGACA AAGGGAGAGGGGGTGACAATGTCATAAGTTAGCATCATCTTTGGAGGTGAACATGTGTACTTTTAAAAGATTTACTAATA TTGATTCAGATAAGGAATGGATGTAAGAAGAGGAAGATAGAAAAAAGGACACCATGGACACACTAGAAAAACGAAAAACA CCATGGATAGTATAACTAAGGACAATGAGAAGCAGTATGATTGAGTAGGAAGAAACTCATGAAAGTGGACTCAAGGGTGG TTGTTTAACATCACAGATTTGTTTAAATCTGCAGAGTTTTGTTTTCCATCACAGATTAGTGCATAGTTGCGCCTGTCATG CCACCATTGATTTTGAACATAAAAAACATAGCAAGCAAAATTACCAATCTCCATCATCTTACACAGTTACATGCACAGCT TGTCCACCACTCCCTGCACCACCACAACCAGTGGGTGGCGCTTCTCCTGACCCAATGCACGCGCCTCCTTGCGCCCTCAA GCTACACCTGCCACATTTTTCATGTTGCACAATGCCCTGATGTACATGTCTTCACCAGAATGCTCAAATACTACTCCCAA ATTGATGCTCACTCAGAAGTAGTTTCTCTCTTTAAATGTATGCGGTGCTATGACATAAAGCCTGATACATCTTTCTATCC GCTTTTGATAAAATCTGCTAGAAAGGACAGCATGCTGTTTCATGCTCATGTCCTGAAACTGGGACATGGTCATGATCATT ATGTTCGAAATTCAATTTTATACATGTATGCAAAATATGGATCTATACAGCTTGCCAGGAAACAATTTGATGAAATGTCT GATAGAACCGTTGCAGATTGGAATGTAATTATCTCTGGATACTGGAAGAGCGGGAATGAAGAGGAAGCAAGTAAACTTTT TCATATGATGGGTGAGCCACAAAGGAACGTCGTTACTTGGACCACCATGGTTACTGGGTATGCAAAGTCTGGGAATTTGA AGACTGCAAGGATATATTTTGATAAGATGCCTGAAAGAAGTGTGGTATCTTGGAATGCAATGCTATCAGGATATGCTCAG AGTGGAGCACCACTAGAGACTGTAAGATTGTTCAATGACATGCTTAGCTCTGGAAATGAACCAGATGAAACAACATGGGT GACTGTCATATCATCTTGTTCATCTCTTGGTGATCCTTGTCTTGCAGAGTCAATTGTTAGAAAGCTAGACAAAGTGAAGT TCCACTCAAATTATTTTGTCAAGACAGCTCTGCTTGATATGCATGCAAAATGCGGGAACCTCAAGGCAGCTCAGGAGATT TTTGACCAATTGGGCGTGTATAGAAATTCTGTTTCTTGTAATGCCATGATCTCTGCTTATGCAAGACTAGGGGATTTATC TTTTGCAAGAGACCTCTTTAATAAGATGCCAGAACGGGATACTGTCTCCTGGAATTCAATGATTGCTGGTTATGCTCAAA ATGGCGAGTCACTGATGGCAATCAAGCTGTTCAAGGAAATGATCTCTACTAATGACTCAAAACCAGATGAGCTTACTATG GTGAGTGTTTTTTCTGCTTGTGGACACCTCGGATCACTAAGTTTGGGAATTTGGGCTGTGAGCATCCTTAATGAATATCA AATCAAGCTTAGCATCTTAGGATACAATTCATTGATTTTCATGTACTCGAGATGTGGGAGCATGGAAGAGGCCACATTAA TATTTCAAGAAATGGCAACCAGAGATTTAGTCTCCTATAACACATTGATTTCAGGGCTTGCATCCCATGGACATGGAATT GAATGCATCAAGCTAATATCAAAAATGAAAGAAGATGGTATTGAACCAGACCGCATAACATATATTGGTATATTGACTGC ATGTAGTCATGCAGGATTATTGGAAGAGGGTCAGAAAGTTTTTGAATCGATCAAGGTTCCTGATGTAGACCATTATGCGT GTATGATTGATATGCTAGGTCGAGTCGGTAAATTGGAAGAAGCTATGAAATTGATTCATAGCATGCCAATGGAGCCCCAT GCAGGAATTTATGGATCTCTTTTAAATGCTACCCGCATTCATAAACAAGTTGAGCTCGGTGAGCTCGCTGCAGCTAAACT GTTCACAGTTGAGCCGCACAATTCTAGCAATTACGTGTTGCTCTCTAACATATATGCTTTGGCTGGTAGGTGGAAAGAGG TTGGCAATGTAAGGAATATAATGAGAAAACAGGGAGTGAAGAAAATAACTGCCTGGAGCTGGGTGGAGCATCCCTCACAT GTTCATTGTGAAACGATCAAATGATATCTATAAGCTACTGGAAGATCTCAATCAAGGTGAAGTTGAGGAGGGAAGGATAT GTATCTGATAATAGCTGCATACTGAGGATGCTGTATAAAAAAGAAAAGGAGATTCAAAGTAAATGTGACTCAGAGAACTG AATTGTGAATGATTCCGTTATTGAATGAATGAATCTGAGTTTGTTACACAATTTAGCGGACAGTAAAAACTGTACGGTGG GTATTGCACCTAAGTTTTCTCCCCAAAAAAGTATAATAAAAGAAACTCTCTATTCATTTCCGCCATTTCTTATTTACCAT TATCGGCTCATGAATTTGTTGATCCATTTGTGTTGTCAGGTAGACTGAAAATCCCTTTTGCTTTCCCCACCAATGGTAAG TTCTCCCCCTAATTTTACTTGTTCTGTTATGAAATTGTCTCGTTCTGTGTATTTAGGTTCAGATGGATACTTGAAATATC CTTGCTGCATGAGCGTGGTTCAATTAATGGCGCCTCTAATTTTAATGTTAATTTTGTCTTTCATGCAGGGGGAGGCTTTC CTGAAGCTAAAAGAGCCTCTGAGCTGAGTCAACTTTTGGGTTTAAACGTCTTACCTTCACAGGTGTGTTGGAAGAGTCTT GCTGTGTAATGAAAAAGTAGATGCATTTAATATGTTAAGGACATAAAAATAATTCCAATACTCCTTTAGAAATTAAGAGT ATTTAGAGTTATTGATATTGTAATTATCCATCAATATATACACGTTTGGTTTAATTTTGTGGTCTATTCGCTGCATGCAT GTCTTTGTCCAAAGCTACACTAAAAGATTGTCTTCTCACTTTGGTTCCCTCTGAATTTCTTTCTTGAAGTTATCATCATT ATGCAGGTTTTACAGGGCCATTCATCATTTAAACAACTGGATGTATGAATATGCTTCTTATTTGATGATGGTTGCATGTT AATATTACATGCTGAAATGTGAAATCAATAAGGTTAACATACGCCTGCAGGGTCTTCAGGTCTATTTGTTGCATTATGTT TATCTTACAGATCTTTCACTTTTCAGATTTGAGAATAAACTCATTGTTGCTGTGGGAAAAGGGAAACCTGCTGCTGTGAT GTCTGAACTCTGAATATGGTTTTAAGTAAGGTTTTAAGATATTGGCTTGTCTGATGTTTCATGGGTTTGTTGAATAATCA ATCCAACATCATATCCCATATCTTAATTATTTTTTACTTTGTTGATTTTTATCTTCAGAAATGTTCTTTCAATGGATGAA TATGCATCATGCTTTGAAAACATTGATCCATTGGGACCCTACAAGAGGTGGACGACCAAGCTGGCTACTACTCAAAATGC TAAGTTTAATGAGTGTGCTTCAAGGAATGATGTCTTATCTGAAATGGTTCAAGCAGTATTCATAGTTAGCGATCCTGTTG ATTGGAGCAGGGACATGCAGGTTACAAAGATTGGGTGCCCACTAGGGTGGACCTTTAATTTTTTGGTCCACCGGTGGAGC ATTCATTAAACACCATTGGATTAGAGATTCTCAGAATATTCTTCAAATAAATGGTTATGATTGAATGAAGGATGAAAGGC TAAAAATGTAAAATGCACTGAAAACCCTCTTTCACCTAGCTTGTCAACCCCAACAGTGGAAGGACGAGATGATGGCAGAG CTTATCTCCGGCGTGGTACCAATCTTGGCCACCGCCACCTCACCACTCTTCTTGGTCCAGCAAGCCACTCTCCCTTATAT TGAAGAAATCTATTGCAACCTCCAGATCTGATTTTTTCCCGAGAGAGAAAGATGTAGGTTGGGTGAATGATGGTGGTGCA GAAGCTTGCGATGATGAAATTGGTGGGTGTGAGGGTGTTTGATTTAGGGGTGTTTGCTCCCAGTTCCTTCATCCCGTCCC TCACCGGCAACTCCGACCCAGACCCCTGTCATCGTCCTCACTCGCCGCTGGCGGCGATGGGTTTCAGATCACAGCGAGCA AGCTGTCATCGTCTTCCCATTTGTTGCCCCAAGATCACATATTTCCTCTTCACTGTCTGTTGCATGTCGCACCATTGGGT GATAATCGTACCTTGTTCACACAGACACCTATGGATGCAAATGAAGGTGCCCCTCATGAGAAATTCAAAGGGAAGAAGTC CAAGGCTGCTGCTAAATCAGGAGCACAGGTAGTACCTTGGGAGATTATGAGAAGTGTTGGAATTTCTGATGATGAGATAT CCAAGTTTCAGGACCCTTACAAGTGGCTTTCTAAAGAGATAGCACAATATCGGAATAGTCAAACATTAAAAGCAATCATA TTGGAGAAGATCCTTTATTACCACAGACTTAAACCCATATTTTGATCCTTTATTCTCCTTTGGATGGACATCCTTGTGCT GATCATGATAGAGCAACTGGTGCGACAATGGTGGAGAGATTGGTCTGGGAGGCAGGGAGAGGAAGGAGAGTGGGAGGGAG AAGGAGAGAAAGGGGTAAAGTCTGAAATAGCCCTTATGCAAAGTCTGTAATACCCTTGGTGCATCGGTGGACCAAAATAA TAAAGGTCCACCCTAGTGGGCACTTAAAGATTTTATGGTTAATATGTATGAATCAAGATTACAAATAGCAAATGATATAA TTATACAGCTTTTACCATAAGCATCGAAAATTTAATGGAAAGTTTAATTGTTGTGCAGCCGTTCTTTCTCACAAAGCAGC ATGATTTGTACGTGAAATGAAACACACAATATTAGTGGTTTTGGTCTCCCCCACGACGGGAAACCGAATTGCTGATGGGT TTTTTGTACCTAACTGGTAGTTTAGGGCTCAACGCTATCCACTTGGGTGGATGTTCAGCAGAGCAAAATCAGCCTGTGTT AGTTAAACTGCTTCTATGTTTAGATTTTAGTTTATGAGATTTAATGTTATGTGCACAAGGCAATTCCTT
CDS sequence (LotjaGi3g1v0269300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGGTGAGCCACAAAGGAACGTCGTTACTTGGACCACCATGGTTACTGGGTATGCAAAGTCTGGGAATTTGAAGAC TGCAAGGATATATTTTGATAAGATGCCTGAAAGAAGTGTGGTATCTTGGAATGCAATGCTATCAGGATATGCTCAGAGTG GAGCACCACTAGAGACTGTAAGATTGTTCAATGACATGCTTAGCTCTGGAAATGAACCAGATGAAACAACATGGGTGACT GTCATATCATCTTGTTCATCTCTTGGTGATCCTTGTCTTGCAGAGTCAATTGTTAGAAAGCTAGACAAAGTGAAGTTCCA CTCAAATTATTTTGTCAAGACAGCTCTGCTTGATATGCATGCAAAATGCGGGAACCTCAAGGCAGCTCAGGAGATTTTTG ACCAATTGGGCGTGTATAGAAATTCTGTTTCTTGTAATGCCATGATCTCTGCTTATGCAAGACTAGGGGATTTATCTTTT GCAAGAGACCTCTTTAATAAGATGCCAGAACGGGATACTGTCTCCTGGAATTCAATGATTGCTGGTTATGCTCAAAATGG CGAGTCACTGATGGCAATCAAGCTGTTCAAGGAAATGATCTCTACTAATGACTCAAAACCAGATGAGCTTACTATGGTGA GTGTTTTTTCTGCTTGTGGACACCTCGGATCACTAAGTTTGGGAATTTGGGCTGTGAGCATCCTTAATGAATATCAAATC AAGCTTAGCATCTTAGGATACAATTCATTGATTTTCATGTACTCGAGATGTGGGAGCATGGAAGAGGCCACATTAATATT TCAAGAAATGGCAACCAGAGATTTAGTCTCCTATAACACATTGATTTCAGGGCTTGCATCCCATGGACATGGAATTGAAT GCATCAAGCTAATATCAAAAATGAAAGAAGATGGTATTGAACCAGACCGCATAACATATATTGGTATATTGACTGCATGT AGTCATGCAGGATTATTGGAAGAGGGTCAGAAAGTTTTTGAATCGATCAAGGTTCCTGATGTAGACCATTATGCGTGTAT GATTGATATGCTAGGTCGAGTCGGTAAATTGGAAGAAGCTATGAAATTGATTCATAGCATGCCAATGGAGCCCCATGCAG GAATTTATGGATCTCTTTTAAATGCTACCCGCATTCATAAACAAGTTGAGCTCGGTGAGCTCGCTGCAGCTAAACTGTTC ACAGTTGAGCCGCACAATTCTAGCAATTACGTGTTGCTCTCTAACATATATGCTTTGGCTGGTAGGTGGAAAGAGGTTGG CAATGTAAGGAATATAATGAGAAAACAGGGAGTGAAGAAAATAACTGCCTGGAGCTGGGTGGAGCATCCCTCACATGTTC ATTGTGAAACGATCAAATGA
Protein sequence (LotjaGi3g1v0269300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMGEPQRNVVTWTTMVTGYAKSGNLKTARIYFDKMPERSVVSWNAMLSGYAQSGAPLETVRLFNDMLSSGNEPDETTWVT VISSCSSLGDPCLAESIVRKLDKVKFHSNYFVKTALLDMHAKCGNLKAAQEIFDQLGVYRNSVSCNAMISAYARLGDLSF ARDLFNKMPERDTVSWNSMIAGYAQNGESLMAIKLFKEMISTNDSKPDELTMVSVFSACGHLGSLSLGIWAVSILNEYQI KLSILGYNSLIFMYSRCGSMEEATLIFQEMATRDLVSYNTLISGLASHGHGIECIKLISKMKEDGIEPDRITYIGILTAC SHAGLLEEGQKVFESIKVPDVDHYACMIDMLGRVGKLEEAMKLIHSMPMEPHAGIYGSLLNATRIHKQVELGELAAAKLF TVEPHNSSNYVLLSNIYALAGRWKEVGNVRNIMRKQGVKKITAWSWVEHPSHVHCETIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 102 | 102 | 7.8E-24 | ||
| ProSiteProfiles | 8 | 38 | 31 | 10.03 | ||
| TIGRFAM | 10 | 41 | 32 | 1.1E-4 | ||
| PANTHER | 12 | 89 | 78 | 2.3E-103 | – | |
| Pfam | 39 | 86 | 48 | 8.4E-12 | ||
| ProSiteProfiles | 39 | 73 | 35 | 11.794 | ||
| TIGRFAM | 41 | 75 | 35 | 2.4E-6 | ||
| ProSiteProfiles | 74 | 108 | 35 | 7.399 | ||
| Gene3D | 103 | 170 | 68 | 1.3E-8 | ||
| PANTHER | 106 | 172 | 67 | 2.3E-103 | – | |
| ProSiteProfiles | 109 | 139 | 31 | 5.974 | ||
| Pfam | 114 | 135 | 22 | 0.57 | ||
| ProSiteProfiles | 141 | 175 | 35 | 10.753 | ||
| Pfam | 143 | 171 | 29 | 4.1E-7 | ||
| TIGRFAM | 143 | 172 | 30 | 9.2E-7 | ||
| Gene3D | 171 | 227 | 57 | 8.8E-6 | ||
| Pfam | 172 | 219 | 48 | 2.8E-10 | ||
| PANTHER | 173 | 229 | 57 | 2.3E-103 | – | |
| TIGRFAM | 174 | 208 | 35 | 3.8E-7 | ||
| ProSiteProfiles | 176 | 206 | 31 | 7.015 | ||
| Gene3D | 228 | 337 | 110 | 8.6E-25 | ||
| ProSiteProfiles | 243 | 273 | 31 | 8.769 | ||
| TIGRFAM | 247 | 275 | 29 | 9.4E-4 | ||
| Pfam | 247 | 273 | 27 | 4.9E-5 | ||
| PANTHER | 247 | 433 | 187 | 2.3E-103 | – | |
| Pfam | 274 | 321 | 48 | 2.8E-11 | ||
| ProSiteProfiles | 274 | 308 | 35 | 11.805 | ||
| TIGRFAM | 276 | 309 | 34 | 1.0E-7 | ||
| ProSiteProfiles | 309 | 339 | 31 | 7.081 | ||
| Gene3D | 338 | 457 | 120 | 5.1E-10 | ||
| ProSiteProfiles | 340 | 370 | 31 | 8.681 | ||
| Pfam | 344 | 368 | 25 | 0.0015 | ||
| TIGRFAM | 344 | 367 | 24 | 3.3E-4 | ||
| ProSiteProfiles | 406 | 440 | 35 | 7.607 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0269300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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