Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0269300 |
| Transcript ID | LotjaGi3g1v0269300.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G14470.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M9R6|PPR43_ARATH Pentatricopeptide repeat-containing protein At1g14470; TrEMBL-Plants: tr|I1JH99|I1JH99_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0269300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:51875964..51881461) extracted from Lotus japonicus Gifu genome v1.2.
GTAACTCTGAAGAAAGTCATATTACTCATCTTTCTGCCGCCAAGTACACCCTCTCCTCCCTACTCTGCCTCCCACCGACG CCGTCTCCGGCGGGGTTCTCTCTCCACCACAAATCTCTCACCGCCTCGACGTCGCCGACTCGTCGTGACCGACGCACCGC ACCCCTCTGGCCACGTTTCAATACTTTCTCTCTTCTATTTTCCCGAGAAAGTGTCACCGGCAACTGGAAATTCTTGCAAA TCCGACAGTGTTTCGGGCGCCACGAAGAGCTGGTACTAGAAGTGAGCGTTTAGGTGAACACTCCTCTGCTGTGCTATTTA CTGTTGGGTTGCCATTTTTTTTATTGATATGATTTTGATCAATCCAACATGAATGCACCAATGTTAAATTGTAAATATGG ATGTTGTTGTTTTTTCAATTTTTCTGGAGGAATTCAATGGGAATATAACTAGAATTAGGATAAGAAGAAGGTGTGTTGTT TTGGGGCCAATTACAGTTTATTGGTTCTGTTGAGTGGGAAAAAGGACATATTTGATGGTTCATTTGTGCATATCACATTA CCTTTGCTGGAAGACAAAGGGAGAGGGGGTGACAATGTCATAAGTTAGCATCATCTTTGGAGGTGAACATGTGTACTTTT AAAAGATTTACTAATATTGATTCAGATAAGGAATGGATGTAAGAAGAGGAAGATAGAAAAAAGGACACCATGGACACACT AGAAAAACGAAAAACACCATGGATAGTATAACTAAGGACAATGAGAAGCAGTATGATTGAGTAGGAAGAAACTCATGAAA GTGGACTCAAGGGTGGTTGTTTAACATCACAGATTTGTTTAAATCTGCAGAGTTTTGTTTTCCATCACAGATTAGTGCAT AGTTGCGCCTGTCATGCCACCATTGATTTTGAACATAAAAAACATAGCAAGCAAAATTACCAATCTCCATCATCTTACAC AGTTACATGCACAGCTTGTCCACCACTCCCTGCACCACCACAACCAGTGGGTGGCGCTTCTCCTGACCCAATGCACGCGC CTCCTTGCGCCCTCAAGCTACACCTGCCACATTTTTCATGTTGCACAATGCCCTGATGTACATGTCTTCACCAGAATGCT CAAATACTACTCCCAAATTGATGCTCACTCAGAAGTAGTTTCTCTCTTTAAATGTATGCGGTGCTATGACATAAAGCCTG ATACATCTTTCTATCCGCTTTTGATAAAATCTGCTAGAAAGGACAGCATGCTGTTTCATGCTCATGTCCTGAAACTGGGA CATGGTCATGATCATTATGTTCGAAATTCAATTTTATACATGTATGCAAAATATGGATCTATACAGCTTGCCAGGAAACA ATTTGATGAAATGTCTGATAGAACCGTTGCAGATTGGAATGTAATTATCTCTGGATACTGGAAGAGCGGGAATGAAGAGG AAGCAAGTAAACTTTTTCATATGATGGGTGAGCCACAAAGGAACGTCGTTACTTGGACCACCATGGTTACTGGGTATGCA AAGTCTGGGAATTTGAAGACTGCAAGGATATATTTTGATAAGATGCCTGAAAGAAGTGTGGTATCTTGGAATGCAATGCT ATCAGGATATGCTCAGAGTGGAGCACCACTAGAGACTGTAAGATTGTTCAATGACATGCTTAGCTCTGGAAATGAACCAG ATGAAACAACATGGGTGACTGTCATATCATCTTGTTCATCTCTTGGTGATCCTTGTCTTGCAGAGTCAATTGTTAGAAAG CTAGACAAAGTGAAGTTCCACTCAAATTATTTTGTCAAGACAGCTCTGCTTGATATGCATGCAAAATGCGGGAACCTCAA GGCAGCTCAGGAGATTTTTGACCAATTGGGCGTGTATAGAAATTCTGTTTCTTGTAATGCCATGATCTCTGCTTATGCAA GACTAGGGGATTTATCTTTTGCAAGAGACCTCTTTAATAAGATGCCAGAACGGGATACTGTCTCCTGGAATTCAATGATT GCTGGTTATGCTCAAAATGGCGAGTCACTGATGGCAATCAAGCTGTTCAAGGAAATGATCTCTACTAATGACTCAAAACC AGATGAGCTTACTATGGTGAGTGTTTTTTCTGCTTGTGGACACCTCGGATCACTAAGTTTGGGAATTTGGGCTGTGAGCA TCCTTAATGAATATCAAATCAAGCTTAGCATCTTAGGATACAATTCATTGATTTTCATGTACTCGAGATGTGGGAGCATG GAAGAGGCCACATTAATATTTCAAGAAATGGCAACCAGAGATTTAGTCTCCTATAACACATTGATTTCAGGGCTTGCATC CCATGGACATGGAATTGAATGCATCAAGCTAATATCAAAAATGAAAGAAGATGGTATTGAACCAGACCGCATAACATATA TTGGTATATTGACTGCATGTAGTCATGCAGGATTATTGGAAGAGGGTCAGAAAGTTTTTGAATCGATCAAGGTTCCTGAT GTAGACCATTATGCGTGTATGATTGATATGCTAGGTCGAGTCGGTAAATTGGAAGAAGCTATGAAATTGATTCATAGCAT GCCAATGGAGCCCCATGCAGGAATTTATGGATCTCTTTTAAATGCTACCCGCATTCATAAACAAGTTGAGCTCGGTGAGC TCGCTGCAGCTAAACTGTTCACAGTTGAGCCGCACAATTCTAGCAATTACGTGTTGCTCTCTAACATATATGCTTTGGCT GGTAGGTGGAAAGAGGTTGGCAATGTAAGGAATATAATGAGAAAACAGGGAGTGAAGAAAATAACTGCCTGGAGCTGGGT GGAGCATCCCTCACATGTTCATTGTGAAACGATCAAATGATATCTATAAGCTACTGGAAGATCTCAATCAAGGTGAAGTT GAGGAGGGAAGGATATGTATCTGATAATAGCTGCATACTGAGGATGCTGTATAAAAAAGAAAAGGAGATTCAAAGTAAAT GTGACTCAGAGAACTGAATTGTGAATGATTCCGTTATTGAATGAATGAATCTGAGTTTGTTACACAATTTAGCGGACAGT AAAAACTGTACGGTGGGTATTGCACCTAAGTTTTCTCCCCAAAAAAGTATAATAAAAGAAACTCTCTATTCATTTCCGCC ATTTCTTATTTACCATTATCGGCTCATGAATTTGTTGATCCATTTGTGTTGTCAGGTAGACTGAAAATCCCTTTTGCTTT CCCCACCAATGGTAAGTTCTCCCCCTAATTTTACTTGTTCTGTTATGAAATTGTCTCGTTCTGTGTATTTAGGTTCAGAT GGATACTTGAAATATCCTTGCTGCATGAGCGTGGTTCAATTAATGGCGCCTCTAATTTTAATGTTAATTTTGTCTTTCAT GCAGGGGGAGGCTTTCCTGAAGCTAAAAGAGCCTCTGAGCTGAGTCAACTTTTGGGTTTAAACGTCTTACCTTCACAGGT GTGTTGGAAGAGTCTTGCTGTGTAATGAAAAAGTAGATGCATTTAATATGTTAAGGACATAAAAATAATTCCAATACTCC TTTAGAAATTAAGAGTATTTAGAGTTATTGATATTGTAATTATCCATCAATATATACACGTTTGGTTTAATTTTGTGGTC TATTCGCTGCATGCATGTCTTTGTCCAAAGCTACACTAAAAGATTGTCTTCTCACTTTGGTTCCCTCTGAATTTCTTTCT TGAAGTTATCATCATTATGCAGGTTTTACAGGGCCATTCATCATTTAAACAACTGGATGTATGAATATGCTTCTTATTTG ATGATGGTTGCATGTTAATATTACATGCTGAAATGTGAAATCAATAAGGTTAACATACGCCTGCAGGGTCTTCAGGTCTA TTTGTTGCATTATGTTTATCTTACAGATCTTTCACTTTTCAGATTTGAGAATAAACTCATTGTTGCTGTGGGAAAAGGGA AACCTGCTGCTGTGATGTCTGAACTCTGAATATGGTTTTAAGTAAGGTTTTAAGATATTGGCTTGTCTGATGTTTCATGG GTTTGTTGAATAATCAATCCAACATCATATCCCATATCTTAATTATTTTTTACTTTGTTGATTTTTATCTTCAGAAATGT TCTTTCAATGGATGAATATGCATCATGCTTTGAAAACATTGATCCATTGGGACCCTACAAGAGGTGGACGACCAAGCTGG CTACTACTCAAAATGCTAAGTTTAATGAGTGTGCTTCAAGGAATGATGTCTTATCTGAAATGGTTCAAGCAGTATTCATA GTTAGCGATCCTGTTGATTGGAGCAGGGACATGCAGGTTACAAAGATTGGGTGCCCACTAGGGTGGACCTTTAATTTTTT GGTCCACCGGTGGAGCATTCATTAAACACCATTGGATTAGAGATTCTCAGAATATTCTTCAAATAAATGGTTATGATTGA ATGAAGGATGAAAGGCTAAAAATGTAAAATGCACTGAAAACCCTCTTTCACCTAGCTTGTCAACCCCAACAGTGGAAGGA CGAGATGATGGCAGAGCTTATCTCCGGCGTGGTACCAATCTTGGCCACCGCCACCTCACCACTCTTCTTGGTCCAGCAAG CCACTCTCCCTTATATTGAAGAAATCTATTGCAACCTCCAGATCTGATTTTTTCCCGAGAGAGAAAGATGTAGGTTGGGT GAATGATGGTGGTGCAGAAGCTTGCGATGATGAAATTGGTGGGTGTGAGGGTGTTTGATTTAGGGGTGTTTGCTCCCAGT TCCTTCATCCCGTCCCTCACCGGCAACTCCGACCCAGACCCCTGTCATCGTCCTCACTCGCCGCTGGCGGCGATGGGTTT CAGATCACAGCGAGCAAGCTGTCATCGTCTTCCCATTTGTTGCCCCAAGATCACATATTTCCTCTTCACTGTCTGTTGCA TGTCGCACCATTGGGTGATAATCGTACCTTGTTCACACAGACACCTATGGATGCAAATGAAGGTGCCCCTCATGAGAAAT TCAAAGGGAAGAAGTCCAAGGCTGCTGCTAAATCAGGAGCACAGGTAGTACCTTGGGAGATTATGAGAAGTGTTGGAATT TCTGATGATGAGATATCCAAGTTTCAGGACCCTTACAAGTGGCTTTCTAAAGAGATAGCACAATATCGGAATAGTCAAAC ATTAAAAGCAATCATATTGGAGAAGATCCTTTATTACCACAGACTTAAACCCATATTTTGATCCTTTATTCTCCTTTGGA TGGACATCCTTGTGCTGATCATGATAGAGCAACTGGTGCGACAATGGTGGAGAGATTGGTCTGGGAGGCAGGGAGAGGAA GGAGAGTGGGAGGGAGAAGGAGAGAAAGGGGTAAAGTCTGAAATAGCCCTTATGCAAAGTCTGTAATACCCTTGGTGCAT CGGTGGACCAAAATAATAAAGGTCCACCCTAGTGGGCACTTAAAGATTTTATGGTTAATATGTATGAATCAAGATTACAA ATAGCAAATGATATAATTATACAGCTTTTACCATAAGCATCGAAAATTTAATGGAAAG
CDS sequence (LotjaGi3g1v0269300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCACCATTGATTTTGAACATAAAAAACATAGCAAGCAAAATTACCAATCTCCATCATCTTACACAGTTACATGCACA GCTTGTCCACCACTCCCTGCACCACCACAACCAGTGGGTGGCGCTTCTCCTGACCCAATGCACGCGCCTCCTTGCGCCCT CAAGCTACACCTGCCACATTTTTCATGTTGCACAATGCCCTGATGTACATGTCTTCACCAGAATGCTCAAATACTACTCC CAAATTGATGCTCACTCAGAAGTAGTTTCTCTCTTTAAATGTATGCGGTGCTATGACATAAAGCCTGATACATCTTTCTA TCCGCTTTTGATAAAATCTGCTAGAAAGGACAGCATGCTGTTTCATGCTCATGTCCTGAAACTGGGACATGGTCATGATC ATTATGTTCGAAATTCAATTTTATACATGTATGCAAAATATGGATCTATACAGCTTGCCAGGAAACAATTTGATGAAATG TCTGATAGAACCGTTGCAGATTGGAATGTAATTATCTCTGGATACTGGAAGAGCGGGAATGAAGAGGAAGCAAGTAAACT TTTTCATATGATGGGTGAGCCACAAAGGAACGTCGTTACTTGGACCACCATGGTTACTGGGTATGCAAAGTCTGGGAATT TGAAGACTGCAAGGATATATTTTGATAAGATGCCTGAAAGAAGTGTGGTATCTTGGAATGCAATGCTATCAGGATATGCT CAGAGTGGAGCACCACTAGAGACTGTAAGATTGTTCAATGACATGCTTAGCTCTGGAAATGAACCAGATGAAACAACATG GGTGACTGTCATATCATCTTGTTCATCTCTTGGTGATCCTTGTCTTGCAGAGTCAATTGTTAGAAAGCTAGACAAAGTGA AGTTCCACTCAAATTATTTTGTCAAGACAGCTCTGCTTGATATGCATGCAAAATGCGGGAACCTCAAGGCAGCTCAGGAG ATTTTTGACCAATTGGGCGTGTATAGAAATTCTGTTTCTTGTAATGCCATGATCTCTGCTTATGCAAGACTAGGGGATTT ATCTTTTGCAAGAGACCTCTTTAATAAGATGCCAGAACGGGATACTGTCTCCTGGAATTCAATGATTGCTGGTTATGCTC AAAATGGCGAGTCACTGATGGCAATCAAGCTGTTCAAGGAAATGATCTCTACTAATGACTCAAAACCAGATGAGCTTACT ATGGTGAGTGTTTTTTCTGCTTGTGGACACCTCGGATCACTAAGTTTGGGAATTTGGGCTGTGAGCATCCTTAATGAATA TCAAATCAAGCTTAGCATCTTAGGATACAATTCATTGATTTTCATGTACTCGAGATGTGGGAGCATGGAAGAGGCCACAT TAATATTTCAAGAAATGGCAACCAGAGATTTAGTCTCCTATAACACATTGATTTCAGGGCTTGCATCCCATGGACATGGA ATTGAATGCATCAAGCTAATATCAAAAATGAAAGAAGATGGTATTGAACCAGACCGCATAACATATATTGGTATATTGAC TGCATGTAGTCATGCAGGATTATTGGAAGAGGGTCAGAAAGTTTTTGAATCGATCAAGGTTCCTGATGTAGACCATTATG CGTGTATGATTGATATGCTAGGTCGAGTCGGTAAATTGGAAGAAGCTATGAAATTGATTCATAGCATGCCAATGGAGCCC CATGCAGGAATTTATGGATCTCTTTTAAATGCTACCCGCATTCATAAACAAGTTGAGCTCGGTGAGCTCGCTGCAGCTAA ACTGTTCACAGTTGAGCCGCACAATTCTAGCAATTACGTGTTGCTCTCTAACATATATGCTTTGGCTGGTAGGTGGAAAG AGGTTGGCAATGTAAGGAATATAATGAGAAAACAGGGAGTGAAGAAAATAACTGCCTGGAGCTGGGTGGAGCATCCCTCA CATGTTCATTGTGAAACGATCAAATGA
Protein sequence (LotjaGi3g1v0269300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPLILNIKNIASKITNLHHLTQLHAQLVHHSLHHHNQWVALLLTQCTRLLAPSSYTCHIFHVAQCPDVHVFTRMLKYYS QIDAHSEVVSLFKCMRCYDIKPDTSFYPLLIKSARKDSMLFHAHVLKLGHGHDHYVRNSILYMYAKYGSIQLARKQFDEM SDRTVADWNVIISGYWKSGNEEEASKLFHMMGEPQRNVVTWTTMVTGYAKSGNLKTARIYFDKMPERSVVSWNAMLSGYA QSGAPLETVRLFNDMLSSGNEPDETTWVTVISSCSSLGDPCLAESIVRKLDKVKFHSNYFVKTALLDMHAKCGNLKAAQE IFDQLGVYRNSVSCNAMISAYARLGDLSFARDLFNKMPERDTVSWNSMIAGYAQNGESLMAIKLFKEMISTNDSKPDELT MVSVFSACGHLGSLSLGIWAVSILNEYQIKLSILGYNSLIFMYSRCGSMEEATLIFQEMATRDLVSYNTLISGLASHGHG IECIKLISKMKEDGIEPDRITYIGILTACSHAGLLEEGQKVFESIKVPDVDHYACMIDMLGRVGKLEEAMKLIHSMPMEP HAGIYGSLLNATRIHKQVELGELAAAKLFTVEPHNSSNYVLLSNIYALAGRWKEVGNVRNIMRKQGVKKITAWSWVEHPS HVHCETIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 11 | 163 | 153 | 1.8E-10 | ||
| PANTHER | 56 | 224 | 169 | 9.9E-117 | – | |
| ProSiteProfiles | 68 | 102 | 35 | 8.111 | ||
| ProSiteProfiles | 133 | 163 | 31 | 7.311 | ||
| ProSiteProfiles | 164 | 194 | 31 | 8.385 | ||
| Gene3D | 164 | 228 | 65 | 2.6E-9 | ||
| Pfam | 168 | 191 | 24 | 6.5E-5 | ||
| ProSiteProfiles | 197 | 227 | 31 | 10.03 | ||
| TIGRFAM | 199 | 230 | 32 | 1.6E-4 | ||
| PANTHER | 201 | 278 | 78 | 9.9E-117 | – | |
| Pfam | 228 | 275 | 48 | 1.3E-11 | ||
| ProSiteProfiles | 228 | 262 | 35 | 11.794 | ||
| TIGRFAM | 230 | 264 | 35 | 3.8E-6 | ||
| ProSiteProfiles | 263 | 297 | 35 | 7.399 | ||
| Gene3D | 282 | 418 | 137 | 3.1E-28 | ||
| PANTHER | 295 | 358 | 64 | 9.9E-117 | – | |
| ProSiteProfiles | 298 | 328 | 31 | 5.974 | ||
| Pfam | 303 | 324 | 22 | 0.87 | ||
| ProSiteProfiles | 330 | 364 | 35 | 10.753 | ||
| Pfam | 332 | 360 | 29 | 6.2E-7 | ||
| TIGRFAM | 332 | 361 | 30 | 1.4E-6 | ||
| Pfam | 361 | 408 | 48 | 4.4E-10 | ||
| PANTHER | 362 | 419 | 58 | 9.9E-117 | – | |
| TIGRFAM | 363 | 397 | 35 | 5.8E-7 | ||
| ProSiteProfiles | 365 | 395 | 31 | 7.015 | ||
| Gene3D | 420 | 526 | 107 | 1.7E-24 | ||
| ProSiteProfiles | 432 | 462 | 31 | 8.769 | ||
| TIGRFAM | 436 | 464 | 29 | 0.0014 | ||
| Pfam | 436 | 462 | 27 | 7.5E-5 | ||
| PANTHER | 436 | 622 | 187 | 9.9E-117 | – | |
| Pfam | 463 | 510 | 48 | 4.5E-11 | ||
| ProSiteProfiles | 463 | 497 | 35 | 11.805 | ||
| TIGRFAM | 465 | 498 | 34 | 1.5E-7 | ||
| ProSiteProfiles | 498 | 528 | 31 | 7.081 | ||
| Gene3D | 527 | 646 | 120 | 1.0E-10 | ||
| ProSiteProfiles | 529 | 559 | 31 | 8.681 | ||
| Pfam | 533 | 557 | 25 | 0.0023 | ||
| TIGRFAM | 533 | 556 | 24 | 5.0E-4 | ||
| ProSiteProfiles | 595 | 629 | 35 | 7.607 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0269300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…