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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0270700 |
| Transcript ID | LotjaGi3g1v0270700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(A) polymerase; TAIR: AT5G53770.1 Nucleotidyltransferase family protein; Swiss-Prot: sp|Q7KVS9|TRF41_DROME Non-canonical poly(A) RNA polymerase protein Trf4-1; TrEMBL-Plants: tr|A0A151SVQ3|A0A151SVQ3_CAJCA PAP-associated domain-containing protein 5; Found in the gene: LotjaGi3g1v0270700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:52249922..52257358) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGCAGTGGACACATCAGGGACGAAAAAGGAAAAGAAGAAGAATCGAATATCTACTATCTCTCTCAGTTTATGACTGT AACTCAAAATTCCTCAGATTCGACACTCGCGTGATAAACCCTAACCCTAATTTTAGTCCCAAAAATCTTGTATTAGTGTA TTACCCTCCTCTATCCCTGTTCTACCCTCTGGTTTTTCAATGGGGGAAGAGCAGGAGCTCCCGCCGATTCCCGAAACCTT CCTCTACGAAACTCTCCCTCCACTTTCCTCCTCCACCGCCGCCGTCGATAAATCTCCACCTTCCGACCACCACGAACCAC TCTCAGTTTTCCGCAGCGAAATTTCCCTCTCCACCGTCCATTGCGCTTCGCCCGATTCCGCCGCCCCCGATTTCTTCTCC CTCGATGTCGCCGGCGAAGATTCCCCCGGCCGAGACCCCCTCCCCGAGCCGGTCACGCTATCTGAGCCTAAGACACCAGC TCTTGCCCCTAAGCCGACGCTCGAGAGCAATTGGTTTCGCGGGGATTGCAAATTCAGGAGCCCCATGCTTCAGCTGCATA AAGGTACTGCACTGAACTGATTGAGTTACTACTTATCATTATGGTGTCATTTGATTTATGTTGCTGACTCTACTTAGTGG GAAAAGGCTTGATTGTTATTACAGTAGGTGTTTGTTTTGTAATTTGTTCTGTGATGCTTGGTGTACAGAGATAGTGGATT TTTGTGAGTTTTTGTCACCTACTCCAGAAGAGAAAGCTGCACGCGACATGGCAATAGCATCTGTTTCTGATGTCATAAAA CATATATGGCCTCATTGCCAGGTATATAGGACATTTAGCTATTGCATCCTTTTAATCTTGTTATTTGTAGTGTTTTATGT TTCAATGAAGGGACATTGTCGTTGCTTTCAGGTTGAAGTTTTTGGGTCTTTCAGGACAGGGCTGTATCTTCCGACTAGTG ATATTGATGTGAGTTCAATTGATATTGTGATGGTAAACCTTCCTTATGAACTAGTGCATGTGGCTGATTAATACATTGTC AAATCCTTTTTCTACAGGTTGTGATTCTGAAAGCAGGCTTACCAAACCCGCAAATGGGTTTGAATGCAATTTCTAGATCA TTGTCACAAAGGGGCATAGCTAAAAAGATACAGGTCTGCTTTGGTTACTCAAATATCAGTGTTTTTGTTTCCATGAAAGT GTTATTAGGGTGTGCAAAATTTTAACTATCCGGTTGCTTGTGAATCTTCCGCAGGTCATTGGAAAAGCTCGCGTGCCAAT TATTAAATTTGTTGAGAAGAGGAGTGGTGTTGCATTTGATATCAGGTTCAACATTTCCTTTTTGATTTTGGATCTTAAAA CTCTATTGCACTGCTAGATTCTTTTCACCATTTTTCTCCTTGGTTGTTTTCTGCTCAATGTTCATTTGGTAACCAAGCTC TCATAAGGAAAAACAAGATAGTAGAGTTGCATATATGAGTGTTATAAGCTCTTATACTATCTAATGTTTGATGCGCCATA CAATATTAATTATGTTAGAAATATAGTATAAAACTGTTAATGTTTATCCAACAACTTAAGCGTTACTTTGGGGTACATGG TATCAGAGCTTATATGACTTGAGTGGTGTAGACTGTAGAGTATGATCTTTGTTGCCCCACCTACTGAATTTAAGCACAAG ATAGGTTGGCACATGCATTGTCCACACCCCAAGCCTAATGGGCTCTTATGTGAGTGAGCGTGTTAGAAACATAATATACA ACCATTTGTTTCTTCATCCAATAGTTTTAGATTTTGGGATAGTTGGTTCATGACTTGGTATCAGAGCCTTTATGTGACCA AAGTGGTCTAGAGTTCGATCTTTGTTACCCCCGTTATTTAATAAAAAAATGAATTTCAAGTTCAGGACATGTTAGATGAG CCTGTGCATTGCCACGCTTCAAGCCCAATGGACTCTTACGTGAGGGGGCTATATTTATAACATTTATGTGTTTTCACACG ACAACTTAAGTGTTTGTGATTGTTGGTTCATGACAAATTACATGCAAATGACATTATTACACTTCTATTAGGTGGTGGCA ACAATGGTGTGCGTTCAAAAAAAAAAAACAATGGTGTGAAAGCAGAGCTGGAGGGTGACGAGAAGCAGTGGAGTGTATAC TAGGTAGGGGTGGTGCCTGGCGATGGTGGAAGATGTAGCGCTAGGTGTGTGTGAGGGATACACATGTGGATGTTCTGAGC TGGCCAAGTTAGGTAGGTCACCTATCATCATAGGGGCGTAGTGGAGTGGGGGATGTGGTGTAGAGAATATTGGGTTTTTG GTGACTGAGTAGTCTTTTATAGGAGCTTGGATCTGGAATAAGAATTTTCTGAAATCAATAATATGAATAATTTCAATAAT ACTATGTTTTTGTTCTTTCTATCATATACTTTATAGATAAGTGGTTGTCGCACATCTGCACAGTTAGGGCTATTATGTAA CTTTTTCTTTCACTGAATCAATGTTGCTGATCCATTGTGGGTGCTTTGTTTCAGTTTTGATATAGACAATGGACCCAAAG CTGCTGAGTATATTCAGGTTTGTTCTAATTTTTTCACTACTTGTTTAAGATATTAGGATTTTAGATTCGATGTAGAGCAT TGAATATATTATTTGCACAATATATGAAGAGTTATTACAAAATGTTGAACAAATGTGGAAATTTGAACATATATTTATAT AATTAGTTTTTTTTTTAAATACTCTTATTAATGAGAAATGGATGCAATTAATTGTATGATATTCTTATACAAATGTGCAG TCTAAACTATATTATGAATTATATGATTTTTATTCAAGCTGATAATAAGGTAATTTGATACATAATCATATAAAATACAA CATCCTTCAAGCATATAATGACACGTTACATCATTCTCCATAGGCGTATGATCAAATCAATAGCTTCTACGGGTACTTAT ATCTGAGGCGCTCATATTTTACTAACATATTTGAAGTTGCTTAATTATTGCATTATAACTTCAAATTGATTTAAATCAGT TATGGAGTGTGAGCCCTTGTGGTCAAAATGTTACTGTTTCTGCTCTGCACAGTTGAAATATCTACAATACCTCCAAAAGT AAAATTCCTTAAGTAGTCGTGCCGAAGGAGGCCACTGAAAGACATTTTAGAACTCCATGCACTCTCAAATATATTTTTTT CTATTTAAGGAGTTATATAAATGGAAACAAAACAGCAAATATTAGAAACATTATGTATATTCTTCATGGTTGAACCCTTG AATATGCAGGAAGCAGTAGCTAAGTGGCCGCCACTACGACCATTGTGTTTGATTTTGAAAGTATTTTTGCAACAAAGAGA ACTTAATGAGGTATGAGTTTTTCTTAAATGTTTTATCTGATTCTGATCTTCCTAATGGAAATTTCTTATAAAGTATGCCC TATGCAGGTGTATTCTGGTGGGATTGGTTCTTATGCTCTCCTTGCCATGTTGATGGCAATGTTGCGGGTTAGTGGTTCTT AAATATGCTTTTAAAGTTCACTGTTTGCTCTCTCGCCTTCATCATATTTGACATATGATCCACCTCAATATTATGAAAAT AAATCATGAAAATCATTTCCCACCCCCTAATGTTACATATTTGGCATTGCATTAAGTTCAGTGCACTTCTTTTTACCTAT GATATCTCTAAGTTCGTGACCATTATATGTTTCAGAATCTCCGTCAGAGTCAAGTTTCAGCGGAACACAACTTGGGGCTC CTTTTGGTGCGTATCTTCTGAACAGCAGTTCTGTATTTGTTTTTTGGGTGCCAGGCAGTTAGAGGGGACTTATTCCATGA TTGGCATGTTATTTTATTTTTATTATTTCTAATATTATGAAAATAGAAACATGTGGTATAATCCTATACTGCAAGCCTTT ATTTGGACAATGTTTCCTTTCTGGGTTGTAAAGTGAGAAATATTCCCAAAATTATCATTCTTATTTATATATATCTCGAT CTCAGGTGCATTTTTTTGATTTCTATGGACGCAAATTGAACACAGCAGATGTTGGTGTCTCTTGTAATGGGGCAGGCACC TTTTTCCGAAAGAGTAGTAAAGGGTAAGAAAGAAATTGGATATATTTGTCAAGAAATGTCATTTTTAATTAATCTGGATA AACAATTGTGAAAGTTATTAATTTTCCCCTTGTCATATCTTAGGTTTGCCAACAAAGGACGACCATTTCTTATCGGCATT GAGGATCCACAGGTTTGCTTGAAAGAACTGTCTTTTGCTTTCATAAAGTAAAGATGTGGACCATTTTAAAGATAGACTTT TCATAACTTAACTTTTATTTGAGACCAGGATTTTTTTTTGGGGGGGGGGGGGTATTCTGTTTAGACGACTGCTTTATTGT ATTATTGGTCTTCTTTGGATCTCTTGTTCAGATTTCTCTATATATGTCTGAGGATATTTTATAATCTTCCATTAGCCATA CTTTGTTGCCCTTTGCTTGGTCCCTCTGCTTTCCAGTAGGTGAAATGCTAGCAACACATTCTTGTAACACACTTTCTTGT GATTGGTTTATTGTTTTAAAAGTCATCACATTTTTTAATAATTGAGGCATATGTTGACTATTTTCAAAATAGACTGATAA AACCCAACTCACAGAAGCAAGGAAAAACAGAGAAAGATAGGATTATATTACTGAATCCTGAATCACTAAGAAATCTCAGC CCAGGTTTTAGGGAAAATACAGAGAAAACTGAGAAAGAAAAGATAAAAGGGAAAAGAAAAGGTTCCAGCAATTTCGAGGA TGCTGCTGTTAGAAGTCTCACATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGTTGTGCAAACCTCAACTCTTG AGCTAGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATATGGTATCAGAGCCTATCCTAGATCCATTTGTTGTTTG TTGTGGAGACTTCCCATATTTGGGGCACCCGTTATTGTTGATCCCACGTTCCAGGTTGTTCAGTCCTGGACGTGAGGGGA TGTGTTAGAAGTCTCACATTGGCTAGAGATAGAGCATAGATAGCCTTAATAAGGGTTGTGCAAACCTCAACTCTTGAGCT AGCTTTTGTGGTTGAGTATAGGCCTCCCAATTTCTAATAGCTGCTAGCCTCCAATTTTCCAATACTGATCTTGCCTACCT ACTCATTCTCTGACCATTCTGTTTTAGCCAGATTCCTCACCTTTCTCTCTCTCCTACACGTCAGCACTAAGAGAACACTA GTGGGAATTCTCACTAATTCCCTTCTTGCCCCTTCTAGAATATAATTGGACTATCTTGGGCCTTAAGTTATCAGGGCTTT TGGGTGGGTTCTCATCATAGACCAATCATAGAGAGTGTGTGAGAGTGTATTGATAGCACTCCTCTTTTAGGAGTAAAGAA TATTTTAGGTTACCATTTCCATTCCAAAGTTCCTTGGAGCAATTGCTTACTATTGTATGAGGTAATATATTAAAATTTGA AGTCAAGGGTAAGGCTACAAAAATGTTAAGAAACAGAATTTATAGTGCACTGAAGAATATATAGGCACTACTCTCCTTTA CTTTCTGCAGTAAACTCCTTTAAATGATTTTACTAATATGCAATTAGTATAATACGAAGTGGATTGGCACATATTATGTC AAAACACAAGTATAGTTGATTGACTAGGATTTTTCTTCTGGCTGAATTAGGCACCGGAGAATGACGTCGGGAAGAACTCC TATAATTATTTCCAGGTTTGTTTATCTTTCTTAGCAAATAATGTCTATAATAATATTTCTAGAAATGTCTCAAGTCTTGA AGTGTGGAGTAACCAATGTGAGATAGTTTTTCAGTTAACTATTCCATTGAGTTTCCTCTTTTTCTATCCGTGCATGTTTT CCAGAGTTCATTAAGTTGTGTCATATCATATTTATGATATATACGTTAATTGCTTGGACAATTTGTTATTGTCTGGAAAT CATGCTCACACATGTCATAGTTTGAAAGCTGCGTTTTTTCTGGAAGGATAATTATAATCCTCCTGCAGTTCCCCATTATT TATTCATTCCCATCATATATCACACCTTCCATCTAAATAAAGCATATTTTTTCTAATTGCCTCTGCAGGGGCAAATATTT GAAATTTACTGCTTGAAAATTTGTGTCGTAGGGTTTGCTTCTAATTTATATTGATCCAGCTCATTGTCCTGTTTCCTATT AGTTAGAAGGGGGGTAGATCATTATCCTTTCCTCTTACCCCTTAATAAAGTGATCATGTTATGTGTGTGTTATTTTTTGT GTTCCTATGCATGCAAAGGGTGGCTGAAATGGAAATCGTATTCACTTTGCAGATAAGGTCAGCTTTCGCGATGGCTTTCT CTACTTTGACAGATCCCAAGATCATTCTGAGCTTAGGACCGAAAAGGAGCATTCTTGGTACTATAATTAGACCAGACCCT AACTTGATAGAGCGTAAAGGGGGGTTGAACGGGGAGGTGACTTTTAATAGTTTGCTTCCTGGTGCTGGCGAGCCAATACA ACAAAAGTTTGGAGAGCAGGATATGTTATGCAATTGGCAGTTAGATGATGAAGAAGAACTGTTGCCACGGGGTGTTGACA CTAGTGCAGAGCCCAGCAGACGCTCAAACTCAACAAAAAAGGATGTTGACACTAGTGCAGAGCCTAGCACACACTCGAAC TCAACAAAAAAGAGAAAATCTGCATCTAAGAAAAGTTCTAGTAAGAAGTTAAAGGAAAATGGGGATATTCGGCACATAGC AGAAAAAGAGAACGGTATAAAGAAAAAGAGCAAAAAGATGATAAAATCTTATTAGACCTTGAGGCCAATTGCTGAGAGTT TATTACAGGAAAATTGTTGGGGACTATAATTTGATCAGCTCATTCAGAAAATGCTATCTTGAGGCCGAATGTTACCACCA TATGACCCAAGGTTTGATTTGGATCCCTGCCCCGCATAAGAGCCTCCAGCCCTCTAGTGTATTGGAATCACGTACATGAT TTGTTGAATTTCTTTTTTCTTTGGAGTTCCATGTTCAATTTTACTAGAGAACTCTGGAAACCAAAATTCAATTTTGTTAG TGTCTTGTACCATAATGTATAAGCTAGACGTGAATTGGTCACCTTATATTATAAGTCAAAAGCTTTGGAATTTTGTGTAA TTCAATCTCTGCTGAACATACTGACTTTCTAGTATATTTAGTTATTTACTGAACATTTTTGTTCTCAATCGTGGGAAACA TGTATGAATCAGTACACATTCTTTAACACTGTTATTGTCATGTGACATACAAGTAGACCACACCATGTTATAGGAAATGG ACTCAATAAATATATGGCTTAAATAAGTTTTTGGTCTCTAACCTTTACCAAATGCTTGGTTTTCATCCCTCGCCGGA
CDS sequence (LotjaGi3g1v0270700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGGAAGAGCAGGAGCTCCCGCCGATTCCCGAAACCTTCCTCTACGAAACTCTCCCTCCACTTTCCTCCTCCACCGC CGCCGTCGATAAATCTCCACCTTCCGACCACCACGAACCACTCTCAGTTTTCCGCAGCGAAATTTCCCTCTCCACCGTCC ATTGCGCTTCGCCCGATTCCGCCGCCCCCGATTTCTTCTCCCTCGATGTCGCCGGCGAAGATTCCCCCGGCCGAGACCCC CTCCCCGAGCCGGTCACGCTATCTGAGCCTAAGACACCAGCTCTTGCCCCTAAGCCGACGCTCGAGAGCAATTGGTTTCG CGGGGATTGCAAATTCAGGAGCCCCATGCTTCAGCTGCATAAAGAGATAGTGGATTTTTGTGAGTTTTTGTCACCTACTC CAGAAGAGAAAGCTGCACGCGACATGGCAATAGCATCTGTTTCTGATGTCATAAAACATATATGGCCTCATTGCCAGGTT GAAGTTTTTGGGTCTTTCAGGACAGGGCTGTATCTTCCGACTAGTGATATTGATGTTGTGATTCTGAAAGCAGGCTTACC AAACCCGCAAATGGGTTTGAATGCAATTTCTAGATCATTGTCACAAAGGGGCATAGCTAAAAAGATACAGGTCATTGGAA AAGCTCGCGTGCCAATTATTAAATTTGTTGAGAAGAGGAGTGGTGTTGCATTTGATATCAGTTTTGATATAGACAATGGA CCCAAAGCTGCTGAGTATATTCAGGAAGCAGTAGCTAAGTGGCCGCCACTACGACCATTGTGTTTGATTTTGAAAGTATT TTTGCAACAAAGAGAACTTAATGAGGTGTATTCTGGTGGGATTGGTTCTTATGCTCTCCTTGCCATGTTGATGGCAATGT TGCGGAATCTCCGTCAGAGTCAAGTTTCAGCGGAACACAACTTGGGGCTCCTTTTGGTGCATTTTTTTGATTTCTATGGA CGCAAATTGAACACAGCAGATGTTGGTGTCTCTTGTAATGGGGCAGGCACCTTTTTCCGAAAGAGTAGTAAAGGGTTTGC CAACAAAGGACGACCATTTCTTATCGGCATTGAGGATCCACAGGCACCGGAGAATGACGTCGGGAAGAACTCCTATAATT ATTTCCAGATAAGGTCAGCTTTCGCGATGGCTTTCTCTACTTTGACAGATCCCAAGATCATTCTGAGCTTAGGACCGAAA AGGAGCATTCTTGGTACTATAATTAGACCAGACCCTAACTTGATAGAGCGTAAAGGGGGGTTGAACGGGGAGGTGACTTT TAATAGTTTGCTTCCTGGTGCTGGCGAGCCAATACAACAAAAGTTTGGAGAGCAGGATATGTTATGCAATTGGCAGTTAG ATGATGAAGAAGAACTGTTGCCACGGGGTGTTGACACTAGTGCAGAGCCCAGCAGACGCTCAAACTCAACAAAAAAGGAT GTTGACACTAGTGCAGAGCCTAGCACACACTCGAACTCAACAAAAAAGAGAAAATCTGCATCTAAGAAAAGTTCTAGTAA GAAGTTAAAGGAAAATGGGGATATTCGGCACATAGCAGAAAAAGAGAACGGTATAAAGAAAAAGAGCAAAAAGATGATAA AATCTTATTAG
Protein sequence (LotjaGi3g1v0270700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEQELPPIPETFLYETLPPLSSSTAAVDKSPPSDHHEPLSVFRSEISLSTVHCASPDSAAPDFFSLDVAGEDSPGRDP LPEPVTLSEPKTPALAPKPTLESNWFRGDCKFRSPMLQLHKEIVDFCEFLSPTPEEKAARDMAIASVSDVIKHIWPHCQV EVFGSFRTGLYLPTSDIDVVILKAGLPNPQMGLNAISRSLSQRGIAKKIQVIGKARVPIIKFVEKRSGVAFDISFDIDNG PKAAEYIQEAVAKWPPLRPLCLILKVFLQQRELNEVYSGGIGSYALLAMLMAMLRNLRQSQVSAEHNLGLLLVHFFDFYG RKLNTADVGVSCNGAGTFFRKSSKGFANKGRPFLIGIEDPQAPENDVGKNSYNYFQIRSAFAMAFSTLTDPKIILSLGPK RSILGTIIRPDPNLIERKGGLNGEVTFNSLLPGAGEPIQQKFGEQDMLCNWQLDDEEELLPRGVDTSAEPSRRSNSTKKD VDTSAEPSTHSNSTKKRKSASKKSSSKKLKENGDIRHIAEKENGIKKKSKKMIKSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 275 | 275 | - | – | |
| MobiDBLite | 1 | 40 | 40 | - | – | |
| MobiDBLite | 69 | 95 | 27 | - | – | |
| PANTHER | 102 | 519 | 418 | 2.1E-147 | – | |
| PANTHER | 102 | 519 | 418 | 2.1E-147 | – | |
| SUPERFAMILY | 111 | 267 | 157 | 4.53E-38 | ||
| Gene3D | 112 | 389 | 278 | 2.1E-95 | – | |
| Gene3D | 134 | 242 | 109 | 2.1E-95 | ||
| CDD | 139 | 249 | 111 | 1.3112E-34 | – | |
| Pfam | 147 | 247 | 101 | 2.6E-10 | ||
| SUPERFAMILY | 255 | 394 | 140 | 8.63E-32 | – | |
| Phobius | 276 | 294 | 19 | - | – | |
| Phobius | 295 | 536 | 242 | - | – | |
| Pfam | 307 | 365 | 59 | 3.0E-12 | ||
| MobiDBLite | 462 | 536 | 75 | - | – | |
| MobiDBLite | 505 | 529 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotidyltransferase activity | Catalysis of the transfer of a nucleotidyl group to a reactant. |
Expression pattern of LotjaGi3g1v0270700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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