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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002934
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 25 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.391s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0063719.1
n.a. PAP/OAS1 substrate-binding domain-containing protein [Arabidopsis thaliana] gi|42565972|ref|NP_191191.2| chr0 21733809 21736865 -
2 domain predictions
1 GO term
Lj0g3v0075389.2
n.a. nucleotidyltransferase [Arabidopsis thaliana] gi|42566126|ref|NP_191728.2| chr0 28587738 28593306 -
2 domain predictions
1 GO term
Lj0g3v0082919.1
n.a. PREDICTED: PAP-associated domain-containing protein 5-like [Cicer arietinum] gi|502084745|ref|XP_004487752.1| chr0 32662843 32670281 -
2 domain predictions
1 GO term
Lj0g3v0084859.1
n.a. PREDICTED: poly(A) RNA polymerase GLD2-like [Glycine max] gi|356537950|ref|XP_003537469.1| chr0 33849623 33851396 +
2 domain predictions
1 GO term
Lj0g3v0126739.1
n.a. Nucleotidyltransferase family protein isoform 1 [Theobroma cacao] gi|508704418|gb|EOX96314.1| chr0 57079268 57088688 +
2 domain predictions
1 GO term
Lj0g3v0126739.2
n.a. Nucleotidyltransferase family protein isoform 2 [Theobroma cacao] gi|508704419|gb|EOX96315.1| chr0 57079268 57088688 +
2 domain predictions
1 GO term
Lj0g3v0326359.1
n.a. PREDICTED: poly(A) polymerase-like [Cicer arietinum] gi|502137984|ref|XP_004503248.1| chr0 170603435 170605503 +
2 domain predictions
1 GO term
Lj1g3v1182050.1
n.a. PAP/OAS1 substrate-binding domain-containing protein [Arabidopsis thaliana] gi|42565972|ref|NP_191191.2| chr1 14406681 14410579 +
2 domain predictions
1 GO term
Lj1g3v1182050.2
n.a. PAP/OAS1 substrate-binding domain-containing protein [Arabidopsis thaliana] gi|42565972|ref|NP_191191.2| chr1 14407247 14410579 +
2 domain predictions
1 GO term
Lj1g3v2095480.1
n.a. PREDICTED: poly(A) polymerase-like [Glycine max] gi|356515639|ref|XP_003526506.1| chr1 24758391 24765206 -
2 domain predictions
1 GO term
Lj3g3v2318240.2
n.a. PREDICTED: poly(A) polymerase-like [Glycine max] gi|356528904|ref|XP_003533037.1| chr3 28809112 28815752 -
2 domain predictions
1 GO term
Lj3g3v2318240.3
n.a. PREDICTED: poly(A) polymerase-like isoform X3 [Cicer arietinum] gi|502156117|ref|XP_004510318.1| chr3 28809112 28815752 -
2 domain predictions
1 GO term
Lj3g3v2318240.4
n.a. PREDICTED: poly(A) polymerase-like isoform X3 [Cicer arietinum] gi|502156117|ref|XP_004510318.1| chr3 28809112 28815752 -
2 domain predictions
1 GO term
Lj3g3v2720160.1
n.a. JHL05D22.13 [Jatropha curcas] gi|317106636|dbj|BAJ53142.1| chr3 33326432 33332410 -
2 domain predictions
1 GO term
LotjaGi1g1v0308400.1
n.a. Poly(A) RNA polymerase cid14; TAIR: AT3G56320.1 PAP/OAS1 substrate-binding domain superfamily; Swiss-Prot: sp|Q5XET5|HESO1_ARATH Protein HESO1; TrEMBL-Plants: tr|A0A072VBJ5|A0A072VBJ5_MEDTR Nucleotidyltransferase domain protein; Found in the gene: LotjaGi1g1v0308400 LjG1.1_chr1 74983356 74991008 +
2 domain predictions
1 GO term
LotjaGi1g1v0308400.2
n.a. Poly(A) RNA polymerase cid14; TAIR: AT3G56320.1 PAP/OAS1 substrate-binding domain superfamily; Swiss-Prot: sp|Q5XET5|HESO1_ARATH Protein HESO1; TrEMBL-Plants: tr|A0A072VBJ5|A0A072VBJ5_MEDTR Nucleotidyltransferase domain protein; Found in the gene: LotjaGi1g1v0308400 LjG1.1_chr1 74983356 74994607 +
2 domain predictions
1 GO term
LotjaGi1g1v0409600.1
n.a. Poly(A) polymerase-like protein; TAIR: AT4G32850.5 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A072V3Z3|A0A072V3Z3_MEDTR Poly(A) polymerase-like protein; Found in the gene: LotjaGi1g1v0409600 LjG1.1_chr1 90010422 90021302 -
2 domain predictions
1 GO term
LotjaGi1g1v0409600.2
n.a. Poly(A) polymerase-like protein; TAIR: AT4G32850.2 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|I1K9H4|I1K9H4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0409600 LjG1.1_chr1 90010422 90021302 -
2 domain predictions
1 GO term
LotjaGi2g1v0201600.1
n.a. Poly(A) polymerase; TAIR: AT1G17980.1 poly(A) polymerase 1; Swiss-Prot: sp|Q9LMT2|PAPS1_ARATH Nuclear poly(A) polymerase 1; TrEMBL-Plants: tr|I1L486|I1L486_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0201600 LjG1.1_chr2 64022356 64030578 +
2 domain predictions
1 GO term
LotjaGi3g1v0205500.1
n.a. Poly(A) polymerase; TAIR: AT4G00060.1 Nucleotidyltransferase family protein; Swiss-Prot: sp|Q68ED3|PAPD5_MOUSE Non-canonical poly(A) RNA polymerase PAPD5; TrEMBL-Plants: tr|A0A0R0KL49|A0A0R0KL49_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0205500 LjG1.1_chr3 30129550 30150639 -
2 domain predictions
1 GO term
LotjaGi3g1v0270700.1
n.a. Poly(A) polymerase; TAIR: AT5G53770.1 Nucleotidyltransferase family protein; Swiss-Prot: sp|Q7KVS9|TRF41_DROME Non-canonical poly(A) RNA polymerase protein Trf4-1; TrEMBL-Plants: tr|A0A151SVQ3|A0A151SVQ3_CAJCA PAP-associated domain-containing protein 5; Found in the gene: LotjaGi3g1v0270700 LjG1.1_chr3 52249922 52257358 -
2 domain predictions
1 GO term
LotjaGi3g1v0371900.1
n.a. Poly(A) polymerase; TAIR: AT4G32850.10 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900 LjG1.1_chr3 76192295 76199440 -
2 domain predictions
1 GO term
LotjaGi3g1v0371900.2
n.a. Poly(A) polymerase; TAIR: AT4G32850.10 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900 LjG1.1_chr3 76192295 76199440 -
2 domain predictions
1 GO term
LotjaGi3g1v0371900.3
n.a. Poly(A) polymerase; TAIR: AT4G32850.5 nuclear poly(a) polymerase; Swiss-Prot: sp|Q8VYW1|PAPS4_ARATH Nuclear poly(A) polymerase 4; TrEMBL-Plants: tr|A0A151SH17|A0A151SH17_CAJCA Poly(A) polymerase; Found in the gene: LotjaGi3g1v0371900 LjG1.1_chr3 76192789 76199311 -
2 domain predictions
1 GO term
LotjaGi3g1v0429800.1
n.a. Poly(A) RNA polymerase cid11; TAIR: AT2G45620.1 Nucleotidyltransferase family protein; Swiss-Prot: sp|O64642|URT1_ARATH UTP:RNA uridylyltransferase 1; TrEMBL-Plants: tr|A0A151UCB0|A0A151UCB0_CAJCA Poly(A) RNA polymerase cid11; Found in the gene: LotjaGi3g1v0429800 LjG1.1_chr3 84093467 84099993 -
2 domain predictions
1 GO term