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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0279300 |
| Transcript ID | LotjaGi3g1v0279300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 11S seed storage protein; TAIR: AT2G28680.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|P07728|GLUA1_ORYSJ Glutelin type-A 1; TrEMBL-Plants: tr|I3SN90|I3SN90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0279300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55790693..55793338) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAATTATCCTCCATAAATCAGATTAGAATTTCAGTTCCGTTGGGACTCTTTCTCCTTCCCTCCCTATAAATAACACC AGTCATCTTCGCTTAGCTTCAACGCACTATCATCCAAAGTAGTCAAAAATTCTCTTGTCTTTCGCTGTTTGGCAAGTGAG AATCTTCGAGAAAAGGAAAGAAAACAGAAAACGATGGCGATTGATCTTTCTCCCCAACTGGCCAAGAAGCTTTACGGCGG CAATGGTGGCTCTTACCACGCCTGGTCCCCTTCTGAACTCCCCATGCTACGCGAAGGCAACATAGGTGCCTCCAAGCTCG CTCTCCAGAAGAACGGTTTCGCGCTTCCTCGTTACTCTGATTCATCCAAAGTCGCTTATGTTCTCCAAGGTACTTCTCCC CTTTCAATTCAGGGTTTCTGAACTCAATTGCACGTTAATCGTATGAAATCACACTCATGCAATGCCTTAATTTCCTGAAA ATCAAATAATTGTATTTTTTTCTTATGCATTGATTCTGTTAAATTGGTTATCTATTGTGAACTTGATCCAGGAATTGAAT TGTACTATGGATTGATTATTAATTTATGCTGTTAAGTCGAATTTCATGTTACTCGTATGAATTCACACTCATGCAATGCA AGAGCTTGATTCCCTGTGAAAATCATATAATTATATTTTTTTTATCATGCATTGATTAGTAATATATGTTGTTAAATTGG TTATTGCGATCTCCAAGGGGTTTCTTACCTTTCAACTGAGGGTTTATCAATCGAATTTCGTGTTACTCGTATGAAATCAC ACTTATGCAATAGCTTGATTTCGAGAGAAGATCATATAATTATATATATGTTTTTATCATGTATTGATTATTAATTTGTG TTGTTAAATTGGTTATTTGTTGTGAACTTGATCCAGGAACTGGAGTTGTTGGAATTGTACTCCCTGAATCAGAAGAGAAG GTTGTTGCAATCAAGAAAGGTGATGCCTTGGCGCTTCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGACACTGA GTTGGTTGTTCTGTTCCTGGGAGACACTTCAAAGGCTCACAAGGCTGGTGAGTTCACTGACTTTTATCTGACTGGTTCCA ATGGAATCTTCACAGGCTTTTCAACTGAGTTTGTGGGGAGAGCTTGGGACTTGAAAGAGAATGAGGTCAAAACCCTTGTT GGAAATCAATCAGCCAAAGGCATTGTGAAGCTGGAAGGTAATATCACCATTCCTGAACCTAAACCCGATCATCGGGATGG CATGGCCTTGAACTGTCTAGAGGCTGCACTGGATGTTGACATCAAGGATGGTGGAAGGGTTGTGGTGTTGAACACCAAGA ATCTTCCATTGGTTGGTGAGGTTGGACTCGGAGCTGACCTTGTGAGGTTGGATGGTGGAGCCATGTGTTCTCCAGGATTC TCTTGTGACTCTGCTTTGCAGGTTACTTATATTGTCAGGGGCAGTGGCAGGGTTCAGGTGGTTGGTGTTGATGGCAAGAG GGTTTTGGAGACAACTGTGAAAGCTGGTAATTTGTTCATTGTGCCTAGGTTTTATGTGGTCTCCAAGATTGCTGATCCTG AGGGATTGGAGTGGTTCTCTATCATCTCCACCCCCAAGTAAGTCGTACTTCCTTCTTTTTACCTTATTGTCAATGCAAGT GAATATTATGCATTTGTTATTTTACAACCGATTACATGAAGTAATTATTTGTTTGATATTATTCTATTTGTTGCTTAAGT AGATTAGATAATTTGTCTCAATAATTTTTGTATTATCTTCAATATTTTGTCTCTAATAGTTACTCATCAGGGATGGGTTA ACAGAACTCATTATAAATGAAAACTGCTGTTTCGCTTGCTAGGGCTATTTACTTGGTTGCAAATTGGTAATTCAGTAGTG AATAACTATTCTGCACTCTGCAGGACATGTACATTTTAACAACTGATAGGTATATATTTGATTGTTAATGGGGTGGGGGT TATATCAGTTAGCATAGCTAGCCTTTGACTTGTTCTCTATATGATAGCATGTATTGATGTTTTTTCTATATACTTATGAT TCTTATTCTTTTGCAGTCCTATATTTACCCACTTGGCTGGAAGTTCTTCAGTGTGGAAGGCTTTGTCACCTACGGTTCTG CAGGCTGCATTCAATGTAGATTCAGGCGTTGAGCAACTCTTCCGTTCAAAGAGGACCGCTGATGCCATTTTCTTCCCTCC ACCAAAGTAGAATGCTAATAGCTACACATGCTCTAGGAACTTATTATCTAGTCGGGGAAATATTAGGGTTGAGTATTTAG GGGAGTTACTATGCTAAGTATTTTTGTTTTTGAATTTTACTATGCTCAAGTATATTTCATTTTATGAATAAAGGAATTTT TATTTTGGTTTATCCGCCCGTTATTCTTATACTTTTTAGAATTATAGATGTTTGGTTTATCTTTGAATGCTTGATGGAAA CGTGAAACGCAACTGGTGTATGCCATTGTTTCACTTACTGCACATGCCCTGGTCAGAACTTGTACTATGCGTAGTTGAAA TTCACCTCCCATTTATGTGCTTTAAGCAACGTTATCCCTGCAATGACGTTTGTGATGGAAGTTATTTGCAGAGGTTTAGC TTCTTC
CDS sequence (LotjaGi3g1v0279300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATTGATCTTTCTCCCCAACTGGCCAAGAAGCTTTACGGCGGCAATGGTGGCTCTTACCACGCCTGGTCCCCTTC TGAACTCCCCATGCTACGCGAAGGCAACATAGGTGCCTCCAAGCTCGCTCTCCAGAAGAACGGTTTCGCGCTTCCTCGTT ACTCTGATTCATCCAAAGTCGCTTATGTTCTCCAAGGAACTGGAGTTGTTGGAATTGTACTCCCTGAATCAGAAGAGAAG GTTGTTGCAATCAAGAAAGGTGATGCCTTGGCGCTTCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGACACTGA GTTGGTTGTTCTGTTCCTGGGAGACACTTCAAAGGCTCACAAGGCTGGTGAGTTCACTGACTTTTATCTGACTGGTTCCA ATGGAATCTTCACAGGCTTTTCAACTGAGTTTGTGGGGAGAGCTTGGGACTTGAAAGAGAATGAGGTCAAAACCCTTGTT GGAAATCAATCAGCCAAAGGCATTGTGAAGCTGGAAGGTAATATCACCATTCCTGAACCTAAACCCGATCATCGGGATGG CATGGCCTTGAACTGTCTAGAGGCTGCACTGGATGTTGACATCAAGGATGGTGGAAGGGTTGTGGTGTTGAACACCAAGA ATCTTCCATTGGTTGGTGAGGTTGGACTCGGAGCTGACCTTGTGAGGTTGGATGGTGGAGCCATGTGTTCTCCAGGATTC TCTTGTGACTCTGCTTTGCAGGTTACTTATATTGTCAGGGGCAGTGGCAGGGTTCAGGTGGTTGGTGTTGATGGCAAGAG GGTTTTGGAGACAACTGTGAAAGCTGGTAATTTGTTCATTGTGCCTAGGTTTTATGTGGTCTCCAAGATTGCTGATCCTG AGGGATTGGAGTGGTTCTCTATCATCTCCACCCCCAATCCTATATTTACCCACTTGGCTGGAAGTTCTTCAGTGTGGAAG GCTTTGTCACCTACGGTTCTGCAGGCTGCATTCAATGTAGATTCAGGCGTTGAGCAACTCTTCCGTTCAAAGAGGACCGC TGATGCCATTTTCTTCCCTCCACCAAAGTAG
Protein sequence (LotjaGi3g1v0279300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIDLSPQLAKKLYGGNGGSYHAWSPSELPMLREGNIGASKLALQKNGFALPRYSDSSKVAYVLQGTGVVGIVLPESEEK VVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKAGEFTDFYLTGSNGIFTGFSTEFVGRAWDLKENEVKTLV GNQSAKGIVKLEGNITIPEPKPDHRDGMALNCLEAALDVDIKDGGRVVVLNTKNLPLVGEVGLGADLVRLDGGAMCSPGF SCDSALQVTYIVRGSGRVQVVGVDGKRVLETTVKAGNLFIVPRFYVVSKIADPEGLEWFSIISTPNPIFTHLAGSSSVWK ALSPTVLQAAFNVDSGVEQLFRSKRTADAIFFPPPK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 2.4E-220 | – | |
| PANTHER | 1 | 355 | 355 | 2.4E-220 | – | |
| SMART | 3 | 157 | 155 | 3.9E-34 | ||
| Gene3D | 4 | 191 | 188 | 8.0E-35 | ||
| Pfam | 12 | 157 | 146 | 3.7E-29 | ||
| SUPERFAMILY | 16 | 345 | 330 | 7.93E-52 | ||
| Gene3D | 194 | 356 | 163 | 1.8E-34 | ||
| SMART | 195 | 339 | 145 | 1.5E-19 | ||
| Pfam | 199 | 335 | 137 | 3.9E-23 | ||
| PRINTS | 211 | 231 | 21 | 1.0E-14 | ||
| PRINTS | 258 | 274 | 17 | 1.0E-14 | ||
| PRINTS | 276 | 291 | 16 | 1.0E-14 | ||
| PRINTS | 294 | 312 | 19 | 1.0E-14 | ||
| PRINTS | 316 | 333 | 18 | 1.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nutrient reservoir activity | Functions in the storage of nutritious substrates. |
Expression pattern of LotjaGi3g1v0279300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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