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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280000 |
| Transcript ID | LotjaGi3g1v0280000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 50S ribosomal protein L23; TAIR: AT3G55280.1 ribosomal protein L23AB; Swiss-Prot: sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a; TrEMBL-Plants: tr|I3SAH8|I3SAH8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0280000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55996324..56001123) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTCAGCTTTCAGCTAGCTTATCAGCTTTCAGCTATCAGCTAGCTTATAAGCTTTCAGCTAGCTTTTCAGCTTTCAG CTAGCTTATCAGCTAAACATGCCAAACATAGCCATAATCCTCTTGGTTATGGATTTTTTTTAGACGTAAATTGACAATGG GCCAGAACATTGGGCCATGACGGAAACCATTTCATAGTTTCACAGCACGTATATATGACCTAACAAAACCCTAACAATGG CTACTGTCTCTGCTTCTCACCTGCAGGTTGTGCTCTACCTCCGAATCTCAATCTCTCTTCTCACTCTTTCAACACCTTCA CTAACCCTTCACCTTCATTTTGCTTTCGTTTTTCAGCGCTTTACGCAGATTTGACAGGGTAGGTTTCTGCTTCTTCGCCG AACAATGGCACCAAAAGGTATTTCCATCGTTCCTTGTTCTTCTTCATCCCCCATTTGCTCCTTTTTCTTCAAATCTGACA TATGGTTACTGCAAATCAATTTCTATTTGAATTTCAAATTTTTGTAATTACTGATTCAAAGTGATAATTAGTCGATGCAT AGTTAATTACATTAATCTGGCTTGTTTTACTGTCTGTTAATACCATGACAACACTTGCTAGCGGTTTCTGATGCCAGCTA CGAATGAGCTTTACCAAGCTCATTGGAAACCTCTTTCCCAAAGCTTTCACCTTTGAACATTTTATAATGGGTTTTTTAAG CTATTATGATTTAAGACTTGGCTTTATTTTTTAGGAATGAATTTTTAGCTTATACTCTAGCAGTTTTACTTTTGAAGCTA TAAGGTTTTAGTAACATTTTGAGGGTTCTTTGTATATTTCATTAGACATGTTTCTGAGTGTTGTTAATGAATTTATGTAT AATGTTCATTCTTGCAGTTATTCATTTCTTTACATTGCTAGGAAGATTATGCTGCATCCTCTTTCCCTATGTTTTCACCT TTGAACATTATAATGGTTGGTTTTTTTTCAAGCAAGTATGTTTCAAGACTTGGGTTTGCTTGCTTAGGAGTGAGTTTTAA CTTATACTTTAGCATTTTTACAGTTTACTTTTGAAGCTTTAAGCTTCTATTAACATTTTGAGGCTTCCTGTGAATTTTAT TGGACATATTTATGAGTGTTGCTAATGTCATTTCATATTGTATAATGTTCATCCTTGCAGTTTTATTATTGAAATTAATC ATCTCGTTACATTCCTGTGTTTCTGTGCAGCTGATGGTTCAAAGAAGACTGATCCCAAGGCGCAAGCCTTGAAAACTGCG AAAGCAGTCAAGTCTGGCCCTACCTTTAAGAAGAAGGCCAAGAAGATCCGAACAACTGTTACATTCCATCGACCAAAGAC TCAAACAAAGGATAGGAACCCTAAGTACCCTCGGATCAGTGCTACTCCAAGGAACAAGCTTGATCACTATCAGATTCTGA AATTCCCCCTCACCACTGAGTCGGCCATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCT GACAAGAAGAAGATCAAGGCTGCAGTGAAGAAAATGTATGACATCCAAGCTAAGAAAGTGAACACCTTGATCAGGTGAGC CTTTATAGCTTATGTACTAGTGACTCTCTTAGGAATTATCTTAAGTTTTAACTCATGATTGCTTATAATGACTAATTCAC CATGGTCTACTAACAAAAAAATTGATATTGCAATTTGCCTTCCAAGCTTTTATCATGATTGGAGGATACTGGATTCTGGT TTTTTTTATGGTCCACATTTGTGATAAATGGCTCATGCTGTGCGTCTCCAGCAGCATAAAATTATTTAGTATAAACCCTA ATTAACAATAACATGAAAGTGATGCTACTACTTGTATGAAAAACTTGAATGCATAGTTGCATAAACATCTATTAGTTCTT CTAAATTAGGGTATTCTGTTCTGTTGCAGGCCTGATGGCACCAAGAAGGCCTATGTTCGGTTGACTCCAGACTATGATGC CTTGGATGTAGCAAACAAGATTGGCATTATCTAAGGTAGTAAGGTTATACTTGGCTTCACTGAAGTCAATTTCTATTTAG ATGATAGTCTGTTTTACAGTGATCTCTGACATTAACCTTTTGAAGCAAGGTTGAGTTCTAAATTTTTCAGTTTTTTGTTT GGTGTATTTTTTATCTAATAGAATTGAGTTTGCTTGCTTAATATTTCCGATTTGATGAGTGAATGAGCATGTTTTCGTTG CCCAATTTTAGTTTTGGTAACTTTTTTTCAATGAATAGATGATAGACTTTGACTAATTATATATTGGATTTAATTTTGAT GTACCACTAACATAATATGGCATCAATATAAGATTATTTGATCGTGTAAAGAAATTTTATACTGAGAGCCTTAAACATGT GATAGGTGTCGTGGGTATTTCACACATTCCAGAGAACCTTGAACATGTGGTTTTGTGAACGAGTTATCAAATATGAAATA ATTTTTAATATTAACAATATGTATACCATGATAGTCTTACTACATATTCTCGAATGGCTGAAAATTAATAGAGCTTTGGA ATTGTTTTTCGATTTACACGATGTATGGTACTGTGCATTTTAACCATCAAGAAAAGATAATTTACCCAAGGTTAAATGAT CATAGATAATTGAAGGATGTATGTTGTTAAGTACTCGTTATGCATATTGATGAAAGTGGAATGTGCATTATGGTTCTTTG TCGTTAGTTATTGTGAAATTATGTGAATTGGACATGATTATGCTTAGTGCCAGTGGTGTTCCCAAACCTATGTGTATTTG TAACTAGAATTAGTGAATTACTAATGTACTCATCCGATCAAGCAAACATGAAAAACCATGTTTTGAATTCAAGAAAGGGT GCATGCAATCATGAACCAACGCTGACAAATTCAAGTAGGTTTCAATTGGATTTCTCCTACTCCAAACTAACTTTCAGTTC GAAGTTTCCAAGTTGATTTTTTTCTTTCTTTCCAAGTTGATATTTATCCTCAAATGCTTGGTGAAAATTTATTTTTGTTG GTCTGTTGGGATTTAGGACTCAAATCGATGGTTTGAATTGCAACAATGTTTATCTTCCTCTATCCTTTGTTTTGTGAAAG AAAATAATCATAATGGCTTCACAGTTGGTCCCCTTCGTTTTTCTTTTGCTATTTTATTTCTCTAGCTTAAAGATTCTGCG ATTTAAATCTCCTTTATTTTTCACAAGTTTAATCTTCTAGTTATTTATTCTATTATTGTGGTCACCTCCGTTTTTTGGTT TCACAATTTCCATATCATTGTTTTTTAGTTGGGAAATGTGGTTCTGTTGTAATTCTTAGCGTTTTTGTATACATGCAAGG TGAATTTTGTCCACTTCACTTTTTAAATTGGCTGTGTAGAGTAATTGTGGTTCCCCATTCAAAATACAATCATCACACAT AAACTTAGTTAAACGTCATGGGTCACCCTTTAAAATAAAAGTTAACTGTTTGATGGAGTTAGTCTAGTGATGTGACTAAA TTTGCACAATTTAAAAAGTAGGGCGTTAAAAGTGCGGAATGACTTAATTCGGGGAACAAAATGAGGAAAAAATGACTAAA ATCATGAAAGTACTAAAGGGGATTATAATCGTCCATGAAGATAACACAAGTGGTAAGAGATGAAAGATGTATGAGTTGGA GGACAAATTAGAGATTAAATTAATAAAATCACTAAACTTAGATGACAATATAGTTCGAAACTTGGAATACATTGGTTTGA AACATGTGTCCAAACTTATTCAAACTCACTAATTACATTTAAATATAATATTTACCATAATAAAAAACAAAAAATATTTC TATTACAAATCCACTATTTTGGTAACAAGGGTAAAGAGAAAACAAGACTAAAAACAGAAAACTGACGAGCAGTCGCATAG CATTGCCAAGACTATTCCATGGCAGCTGGGAAGGGTAGACCGAAGCACTAGTTTCTCATTCTGATATGTTCCCAACTTTA CTGTAAAATTTGCATAGGTGTGAGTCCAAGAATCCAAAAGTCAAGAAGAAAGGTTAGAAATGTTGTGATCAAGTGTGAGT AAGTTTCACATTTGAGTAAAAAGACTACTTTAAGCACTTTATAGTTGAGATGACCTATGCATCTAATGCATTAAGGTTTT GTTCAAAAATGTAGTTTCCAATCTACTTGTAGTCGCTCTTTAGCCTAATGTGAATGATCCTTCGGAGTTTTAAGAATTCC TTTGGCCCAACAAATACAAAGTTGCAATCAGTACTTATCTTTCTTTATAAAATTTTCAATTTTTGAATTCGGAATAGACC TAAGGGCTGATGTTAATAAAACCTTAACTTTCCAAAGTGTTCTACCTATGTGTGAAAAGATAACTGAACACTATGAGTAG ACACATGAGATCTACAGAGGGGGCACTTTGAATGAGACTGAAACCAAGTGTCAATGCAGGAAACATGGAAGCCATGGCTA CAATTAGGAAGAAGTTTTATCCATTCCCCTTCTTCAAATTCCCCCAAGCAAATTGCACAGTCTGTGTTTATTGGCACTTC TCCCCCATTTTTCTTCAACTGAGACGCAGGAAGAGAGGAAGGGACTATGATAGACAACTCCAAGTCACTCATATGAAGCT GAAGTGAAGTAGTATAAGGAATGGACTCATCCTGGTACTGCCCTTCAACCAAATTTCTATTGGGACTTGGACTGTTAAAA CAACACAAGAGAAGCCTGAGAATGTTGCACCGAATCACTATAATCAAGAACACAACACAAAGTGCCAAAATGGAACAGCC
CDS sequence (LotjaGi3g1v0280000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAAAAGCTGATGGTTCAAAGAAGACTGATCCCAAGGCGCAAGCCTTGAAAACTGCGAAAGCAGTCAAGTCTGG CCCTACCTTTAAGAAGAAGGCCAAGAAGATCCGAACAACTGTTACATTCCATCGACCAAAGACTCAAACAAAGGATAGGA ACCCTAAGTACCCTCGGATCAGTGCTACTCCAAGGAACAAGCTTGATCACTATCAGATTCTGAAATTCCCCCTCACCACT GAGTCGGCCATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAGATCAA GGCTGCAGTGAAGAAAATGTATGACATCCAAGCTAAGAAAGTGAACACCTTGATCAGGCCTGATGGCACCAAGAAGGCCT ATGTTCGGTTGACTCCAGACTATGATGCCTTGGATGTAGCAAACAAGATTGGCATTATCTAA
Protein sequence (LotjaGi3g1v0280000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPKADGSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDHYQILKFPLTT ESAMKKIEDNNTLVFIVDLRADKKKIKAAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 16 | 16 | - | – | |
| MobiDBLite | 1 | 62 | 62 | - | – | |
| PANTHER | 2 | 153 | 152 | 3.7E-90 | – | |
| PANTHER | 2 | 153 | 152 | 3.7E-90 | – | |
| Pfam | 14 | 62 | 49 | 3.5E-16 | ||
| MobiDBLite | 26 | 42 | 17 | - | – | |
| Gene3D | 35 | 153 | 119 | 3.2E-59 | ||
| SUPERFAMILY | 70 | 146 | 77 | 6.47E-27 | ||
| Pfam | 73 | 135 | 63 | 4.3E-14 | ||
| Hamap | 73 | 153 | 81 | 22.056 | ||
| TIGRFAM | 77 | 153 | 77 | 8.0E-29 | ||
| ProSitePatterns | 131 | 146 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
Expression pattern of LotjaGi3g1v0280000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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