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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0280300 |
| Transcript ID | LotjaGi3g1v0280300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G46130.1 myb domain protein 48; Swiss-Prot: sp|Q9LX82|MYB48_ARATH Transcription factor MYB48; TrEMBL-Plants: tr|I3TAJ0|I3TAJ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0280300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56026405..56029912) extracted from Lotus japonicus Gifu genome v1.2.
TGAGACTCAACTCACATTTAAATTTTCAACAGTTTGGGACGAGGGCTTTCAGTTATGTCATGTAAACATGCGGTTACCAC CTTGAGGCTAGATAGAGACGACCAACTAGACACTATATATATATATATATATATATGTGTGGTTTAGAACAAACAACTGC TCAAGTAGACTCTATTCATTCCATTAACCTTCATATTTTCCAAACACGTTCTTTGATTTGAGCGTTAAAGTGCCTTTTAT AACTACCCACCATCGTGCTCTGCCCATGCCCCGCTAATCCATAAAATTGAGCGCCACCGCGAACACCCAGAGTTGCTGAC CTAGACCTAAAAGTTGTGGAAGAAAATAAAGGATTGTGATTATTCATTAAGGATCAAGAAACCATTTACATATATACAAC CAAAAAAGAAAATCTATTATACAGATTGGCGCTTAATCTAATGTTTTGTAGTAGCTCAAGGCACCTATACAATGAGAATT AAAACCTGTCAAGGTAATAAAAACATAAAATTTGTCTGATAAGTTCCTAAATGAATCCAAGTTAGTAACTTGGTTTTTAT CAAGTGCTCATGTCACCAACAATAACTATTCACCGACAGATTGATCAATTACGCTGATTTGTTTCCACTTGGTTGAATGA GCATGAGGACCACATGAACGGTGGATATCCAAAGTTGCTTAATATATTAATAATTGTAAAAGACAGTGACAAAAAAATCC TATATAAATACTACTATACCCTGGATAGGTCCCCATAAGTCATCAAGTGGAGAAAAGAAAGTTTCCCTTCAGAAATAGCA ACATTCCTCTTTTCAGAACTTCTTTGCTTAGGAAAAATGGTTCAACAGGAATTCAGAAAGGGTCCCTGGACAGAACAGGA AGACTTCAAGCTGGTGTCCTTTGTTGGAATGTTTGGAGACCGTAGATGGGACTTTATATCTATGGTATCAGGTTTGAAGG TGGCGGGAGACAGTAACATATAGGTAATGCTTATTTGAACATGCTGGATTATGGAAGAAGCAGCTTTTTAACTATCTCAC TTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTATCTTCATCCTGGCCTTAAAAGAGG GAAGCTGACACCCCAGGAAGAGCGCATGGTGCTGGAACTTCAGTCCAAATGGGGAAACAGGTTTGTGAATATGCAGAAAT TGTAATCTGTTTTTTCCTAGTTAATAGTAATCATCATGTCTTTTTTATGTCTTCTTCACATATCACTTTTAGGCTTCTAA TTCACAGTTAATAGCATATTTGCATCGGTTTATTACAACATCCAGAAGCTACCAATAGCATATTTGGATCATCTTATTTT TTCTCGGAATCAATTCTGATAGAATCAATTCTGACACTCAGCAGCTACTTATAGCATATTAGCATGTTTGGATCAACTTA TTTTTTAGCAAAATTAATTCTGACTCTTTGAAGCTACATATTAGCATGTTTAGAGTTTGGACAGGCTTATTTTTTCTCAA AATCAATTCTAGCAATCAGAAGCTACTTATAACATGTTTGGATCAACTTATTTTTCTCAGAATCGATTCTAGCACTAAAA TGTTACTTTTAGCACAGAATCAACTTATTTTTCTTAGAAGACTTAATTGCATTTTTGGCCCCCCAACTATTGCCTCCCTG CGAAAATCGTCCCCAAACTTCAAAATTAGCAAAACACATCCTCTAACTATACATGTCGTTGCACTTTTGGTCCGCTGTTT GCCTTTCGTGAGAAAACTAACGTGAGAAGCTGATGTGGCTCCCTCACGCGTGTCTCACGTGACTTTTCTTAGAGAGCTTG ATGACTGGAGTCACCTGCTTCTCACGTGACTCTAAAAGGGTTCCATGGTGAAGAAGAGGATGGAGGAGGGAGATGACCGT TGGAGCCTTTTAGAGTCACGTGAGAAGCATGTGACTTGTCCGGTCATCAAGCTCTCTGAAGAAAGTCACGTGAGACACGC GTGAGGGAGCCACATCAGATTCTCACGTTAGTTTTCTCACGGAAGGTAAACGACAGACCAAAAGTGCAACTGCATGTATA GTTGGAGGACATTTTTTGCTAATTTTGAAGTTTGAGGACGATTTTCGCAGGAAGACAATAGTTGGGGGACCAAAAGTGCA ATTAAGCCTTCTTAGAATCAACTCAAGCATCCAGAAGCTACTTGCATGTTTGTATTAGCATATTTTTTTTCCTATAATCG ATTCTAACACTCAAAAGCTACTAACATAAGCTTCCTGTAATTTAGAATCCAAGGATTTCCAAACATGCACTTCTTCTCAT AATTGAAAATTGCCTTTAGCATGTTATGTAAAAGGATTTCCAAACATACGCTAACTTCTTCGAGACATGCAGATGGTCAA GAATTGCTAGCAAATTACCTGGGCGCACAGACAATGAGATTAAGAATTTCTGGAGAACCCACATGAGGAAGAAGGCTCAG GAGAAAAAGAAAGGATCATCAGCAGTTCCATCCCCAACACCTTCCTCAATATCCTCAAACAACAATCATGGGGAGGATTA TTCACATGCTTCCAAAAAGGCTGGAGAAGAAAGTTTCTATGACACAGGGGGGTATGGTCATCCTGCTATGGTAGGTTCAA GTTCAACCCAAGTTAAGGTAGGAGGGGGAAATCATCATGATGCTGAACAAGAAATCTCTATGGATGATATATGGAAAGAT ATTGATCTTTCAGAAGAGAACAGTGAAGAAGGCTGCAACTTTTCTTGTCCACCAATGCCTTCTCCATCATCATGGGAGTA TTCTTCAGATCCTCTTTGGGTGATGAATGAAGAAAGCATGGTGTTCCCTGCAAGTGACACTTATTTTCTAACAGGCTAAT CAGGATTCTTTTTCCAATCAACATTTCGTTTGTTCATATCATGTGTACTAGTACTACTACCTACTTTCTGATATAGTCCA ATTAACTCTGTATAGCATTGCACGTTTACGCTTTTGGCATCTTAATACCCTAGTCGGACACAGCTGTAATAGTCTCTATT CTTGAGTGTAGTTGCAGTGCTTTTCCTTTCAAAAGCATCCAATAAGATAGGGAGTTGGTATGTCTAGAATGTAAAATATC AAGCACCTGTTTGCATATTCTAAGTTTCTAATCTTATCTACACTTCTATCGATATAGCTTTTTTCAGTCTTTATATTAGT CTAGAGTAGCAAGTGTAGAGTACACAACTTCCGGATCAAAGTCGCATGGCATGCACGACATGATATGATACATGTTTGGA AATCTTTTTATAATTGATTATAAAGATAAAATCATTTTATTTTCAGGAAGAAACTTATGTGAATAGCTTTTGAATGTTAT AATTGATTCTGAGAAAAATAACCTGATCAAAACATGCTATATACAGATCAATGCAACAAATTGTGACAAAATAGAAGTTT GCAATATAAGGTGAAATGCATGGTTAAAATTAATAAGCTATGCCTCTTAAAGTTATGAATCTAACCGT
CDS sequence (LotjaGi3g1v0280300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTGGAACTTCAGTCCAAATGGGGAAACAGATGGTCAAGAATTGCTAGCAAATTACCTGGGCGCACAGACAATGA GATTAAGAATTTCTGGAGAACCCACATGAGGAAGAAGGCTCAGGAGAAAAAGAAAGGATCATCAGCAGTTCCATCCCCAA CACCTTCCTCAATATCCTCAAACAACAATCATGGGGAGGATTATTCACATGCTTCCAAAAAGGCTGGAGAAGAAAGTTTC TATGACACAGGGGGGTATGGTCATCCTGCTATGGTAGGTTCAAGTTCAACCCAAGTTAAGGTAGGAGGGGGAAATCATCA TGATGCTGAACAAGAAATCTCTATGGATGATATATGGAAAGATATTGATCTTTCAGAAGAGAACAGTGAAGAAGGCTGCA ACTTTTCTTGTCCACCAATGCCTTCTCCATCATCATGGGAGTATTCTTCAGATCCTCTTTGGGTGATGAATGAAGAAAGC ATGGTGTTCCCTGCAAGTGACACTTATTTTCTAACAGGCTAA
Protein sequence (LotjaGi3g1v0280300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLELQSKWGNRWSRIASKLPGRTDNEIKNFWRTHMRKKAQEKKKGSSAVPSPTPSSISSNNNHGEDYSHASKKAGEESF YDTGGYGHPAMVGSSSTQVKVGGGNHHDAEQEISMDDIWKDIDLSEENSEEGCNFSCPPMPSPSSWEYSSDPLWVMNEES MVFPASDTYFLTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 2.1E-44 | – | |
| SMART | 1 | 38 | 38 | 5.6E-4 | ||
| CDD | 1 | 36 | 36 | 7.05564E-8 | ||
| PANTHER | 1 | 159 | 159 | 2.1E-44 | – | |
| Gene3D | 1 | 73 | 73 | 5.3E-16 | – | |
| ProSiteProfiles | 1 | 40 | 40 | 20.181 | ||
| Pfam | 3 | 35 | 33 | 1.8E-9 | ||
| SUPERFAMILY | 3 | 40 | 38 | 2.34E-9 | ||
| MobiDBLite | 35 | 82 | 48 | - | – | |
| MobiDBLite | 47 | 66 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0280300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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