Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi3g1v0280300 |
Transcript ID | LotjaGi3g1v0280300.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Myb transcription factor; TAIR: AT3G46130.1 myb domain protein 48; Swiss-Prot: sp|Q9LX82|MYB48_ARATH Transcription factor MYB48; TrEMBL-Plants: tr|I3RSY2|I3RSY2_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi3g1v0280300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:56026644..56029337) extracted from Lotus japonicus Gifu genome v1.2.
CCAACAATAACTATTCACCGACAGATTGATCAATTACGCTGATTTGTTTCCACTTGGTTGAATGAGCATGAGGACCACAT GAACGGTGGATATCCAAAGTTGCTTAATATATTAATAATTGTAAAAGACAGTGACAAAAAAATCCTATATAAATACTACT ATACCCTGGATAGGTCCCCATAAGTCATCAAGTGGAGAAAAGAAAGTTTCCCTTCAGAAATAGCAACATTCCTCTTTTCA GAACTTCTTTGCTTAGGAAAAATGGTTCAACAGGAATTCAGAAAGGGTCCCTGGACAGAACAGGAAGACTTCAAGCTGGT GTCCTTTGTTGGAATGTTTGGAGACCGTAGATGGGACTTTATATCTATGGTATCAGGTTTGAAGGTGGCGGGAGACAGTA ACATATAGGTAATGCTTATTTGAACATGCTGGATTATGGAAGAAGCAGCTTTTTAACTATCTCACTTTGTTGTAGGTTTG AATAGAACAGGTAAGAGTTGCAGGTTAAGGTGGGTTAATTATCTTCATCCTGGCCTTAAAAGAGGGAAGCTGACACCCCA GGAAGAGCGCATGGTGCTGGAACTTCAGTCCAAATGGGGAAACAGGTTTGTGAATATGCAGAAATTGTAATCTGTTTTTT CCTAGTTAATAGTAATCATCATGTCTTTTTTATGTCTTCTTCACATATCACTTTTAGGCTTCTAATTCACAGTTAATAGC ATATTTGCATCGGTTTATTACAACATCCAGAAGCTACCAATAGCATATTTGGATCATCTTATTTTTTCTCGGAATCAATT CTGATAGAATCAATTCTGACACTCAGCAGCTACTTATAGCATATTAGCATGTTTGGATCAACTTATTTTTTAGCAAAATT AATTCTGACTCTTTGAAGCTACATATTAGCATGTTTAGAGTTTGGACAGGCTTATTTTTTCTCAAAATCAATTCTAGCAA TCAGAAGCTACTTATAACATGTTTGGATCAACTTATTTTTCTCAGAATCGATTCTAGCACTAAAATGTTACTTTTAGCAC AGAATCAACTTATTTTTCTTAGAAGACTTAATTGCATTTTTGGCCCCCCAACTATTGCCTCCCTGCGAAAATCGTCCCCA AACTTCAAAATTAGCAAAACACATCCTCTAACTATACATGTCGTTGCACTTTTGGTCCGCTGTTTGCCTTTCGTGAGAAA ACTAACGTGAGAAGCTGATGTGGCTCCCTCACGCGTGTCTCACGTGACTTTTCTTAGAGAGCTTGATGACTGGAGTCACC TGCTTCTCACGTGACTCTAAAAGGGTTCCATGGTGAAGAAGAGGATGGAGGAGGGAGATGACCGTTGGAGCCTTTTAGAG TCACGTGAGAAGCATGTGACTTGTCCGGTCATCAAGCTCTCTGAAGAAAGTCACGTGAGACACGCGTGAGGGAGCCACAT CAGATTCTCACGTTAGTTTTCTCACGGAAGGTAAACGACAGACCAAAAGTGCAACTGCATGTATAGTTGGAGGACATTTT TTGCTAATTTTGAAGTTTGAGGACGATTTTCGCAGGAAGACAATAGTTGGGGGACCAAAAGTGCAATTAAGCCTTCTTAG AATCAACTCAAGCATCCAGAAGCTACTTGCATGTTTGTATTAGCATATTTTTTTTCCTATAATCGATTCTAACACTCAAA AGCTACTAACATAAGCTTCCTGTAATTTAGAATCCAAGGATTTCCAAACATGCACTTCTTCTCATAATTGAAAATTGCCT TTAGCATGTTATGTAAAAGGATTTCCAAACATACGCTAACTTCTTCGAGACATGCAGATGGTCAAGAATTGCTAGCAAAT TACCTGGGCGCACAGACAATGAGATTAAGAATTTCTGGAGAACCCACATGAGGAAGAAGGCTCAGGAGAAAAAGAAAGGA TCATCAGCAGTTCCATCCCCAACACCTTCCTCAATATCCTCAAACAACAATCATGGGGAGGATTATTCACATGCTTCCAA AAAGGCTGGAGAAGAAAGTTTCTATGACACAGGGGGGTATGGTCATCCTGCTATGGTAGGTTCAAGTTCAACCCAAGTTA AGGTAGGAGGGGGAAATCATCATGATGCTGAACAAGAAATCTCTATGGATGATATATGGAAAGATATTGATCTTTCAGAA GAGAACAGTGAAGAAGGCTGCAACTTTTCTTGTCCACCAATGCCTTCTCCATCATCATGGGAGTATTCTTCAGATCCTCT TTGGGTGATGAATGAAGAAAGCATGGTGTTCCCTGCAAGTGACACTTATTTTCTAACAGGCTAATCAGGATTCTTTTTCC AATCAACATTTCGTTTGTTCATATCATGTGTACTAGTACTACTACCTACTTTCTGATATAGTCCAATTAACTCTGTATAG CATTGCACGTTTACGCTTTTGGCATCTTAATACCCTAGTCGGACACAGCTGTAATAGTCTCTATTCTTGAGTGTAGTTGC AGTGCTTTTCCTTTCAAAAGCATCCAATAAGATAGGGAGTTGGTATGTCTAGAATGTAAAATATCAAGCACCTGTTTGCA TATTCTAAGTTTCTAATCTTATCTACACTTCTATCGATATAGCTTTTTTCAGTCTTTATATTAGTCTAGAGTAGCAAGTG TAGAGTACACAACTTCCGGATCAAAGTCGCATGGCATGCACGACATGATATGAT
CDS sequence (LotjaGi3g1v0280300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCAACAGGAATTCAGAAAGGGTCCCTGGACAGAACAGGAAGACTTCAAGCTGGTGTCCTTTGTTGGAATGTTTGG AGACCGTAGATGGGACTTTATATCTATGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTAAGGTGGGTTAATT ATCTTCATCCTGGCCTTAAAAGAGGGAAGCTGACACCCCAGGAAGAGCGCATGGTGCTGGAACTTCAGTCCAAATGGGGA AACAGATGGTCAAGAATTGCTAGCAAATTACCTGGGCGCACAGACAATGAGATTAAGAATTTCTGGAGAACCCACATGAG GAAGAAGGCTCAGGAGAAAAAGAAAGGATCATCAGCAGTTCCATCCCCAACACCTTCCTCAATATCCTCAAACAACAATC ATGGGGAGGATTATTCACATGCTTCCAAAAAGGCTGGAGAAGAAAGTTTCTATGACACAGGGGGGTATGGTCATCCTGCT ATGGTAGGTTCAAGTTCAACCCAAGTTAAGGTAGGAGGGGGAAATCATCATGATGCTGAACAAGAAATCTCTATGGATGA TATATGGAAAGATATTGATCTTTCAGAAGAGAACAGTGAAGAAGGCTGCAACTTTTCTTGTCCACCAATGCCTTCTCCAT CATCATGGGAGTATTCTTCAGATCCTCTTTGGGTGATGAATGAAGAAAGCATGGTGTTCCCTGCAAGTGACACTTATTTT CTAACAGGCTAA
Protein sequence (LotjaGi3g1v0280300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVQQEFRKGPWTEQEDFKLVSFVGMFGDRRWDFISMVSGLNRTGKSCRLRWVNYLHPGLKRGKLTPQEERMVLELQSKWG NRWSRIASKLPGRTDNEIKNFWRTHMRKKAQEKKKGSSAVPSPTPSSISSNNNHGEDYSHASKKAGEESFYDTGGYGHPA MVGSSSTQVKVGGGNHHDAEQEISMDDIWKDIDLSEENSEEGCNFSCPPMPSPSSWEYSSDPLWVMNEESMVFPASDTYF LTG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 229 | 229 | 3.4E-96 | – | |
PANTHER | 1 | 229 | 229 | 3.4E-96 | – | |
ProSiteProfiles | 3 | 55 | 53 | 15.69 | ||
Gene3D | 5 | 61 | 57 | 1.8E-15 | – | |
SUPERFAMILY | 6 | 102 | 97 | 1.46E-28 | ||
SMART | 7 | 57 | 51 | 1.3E-13 | ||
Pfam | 8 | 55 | 48 | 1.6E-13 | ||
CDD | 10 | 55 | 46 | 1.5538E-9 | ||
ProSiteProfiles | 56 | 110 | 55 | 24.993 | ||
SMART | 60 | 108 | 49 | 9.8E-15 | ||
Pfam | 61 | 105 | 45 | 6.4E-13 | ||
Gene3D | 62 | 136 | 75 | 2.4E-18 | – | |
CDD | 65 | 106 | 42 | 1.72081E-10 | ||
MobiDBLite | 107 | 177 | 71 | - | – | |
MobiDBLite | 117 | 136 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0280300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…