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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0283500 |
| Transcript ID | LotjaGi3g1v0283500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G07590.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590, mitochondrial; TrEMBL-Plants: tr|A0A072VDD0|A0A072VDD0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0283500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57043285..57045189) extracted from Lotus japonicus Gifu genome v1.2.
CAAATTGGGGTTTGGGTCACTAGAAGCGAAGACAATCATAAAACATGCATAGCATAAGAGCCATCGTACAAGCGAGGTTC GTTGAGGCAATACGTCGAACAGTTGGTGGCATTGAAAGCCATGTCCATTTCAGATTCTTGTGCACCGAATCAACACAACA AACCCAGGATAACCTGTGCCGGAGAATCGAGAAGCTCCCCAAAGGAGAACCGGTTGGATCCGCTCTCCGTAGCTGGATGC GAGATGGCTTCCCCGTTCGCAGCAATGACGTCTTTCACGCCATTAACCGTCTCAGGAAGCTCAAGATGAACAAACGCGCA CTTGAGGTCAGTTTTCACATTCTGGTCTTAGATTAGTTGTATTTTTGCAAATTATAGTTGAAGAATGAAAAGGGTATTTG ATGTTGATGGAAAAAATTGAAAATGTGATGTTGGGTGTTGTTTGCTTTGATAGGTGATGGAATGGGTTATTAGGGAGAGA CCTTATAGACCTAGGGAACTAGATTACTCTTATCTTGTTGAATTTACAACTAAGCTTCATGGAATTTCACATGGTGAGAA GCTCTTCACTCGTGTTCCGAGCGAGTTTCAGAACGAGTTGCTCTACAACAATTTAGTCATTGCTTGTCTTGATAAAGGTG TCATAAGGCTCTCACTTGAGTACATGAAGAGAATGAGGGAATTGGGTTATCCCATCTCGCACTTGGTTTTCAACCGCCTT ATAATCCTGCATTCCTCGCCGAGTCTCAGGAAGAACATGATGCCCAAATTGCTCACCCAGATGAAGGCTGATAAGGTCAC CCCACATGTGTCCACCTACAATATCTTGATGAAAATTGAGGCCAATGAACATAATCTTGAGAATTTGATGAGGTTCTTCA GTCTTATGAAGCTACGACAGGTTGAGCCGAATGAGATATCTTACTGCATTTTAGCTTATGCGCATGCGGTGGCTAGGTTG AACACTGCAGCTGAAACATATGTTGAAGCTGTGGAGAAGTCTATGACAGGAAATAATTGGTCAACATTGGATGTCCTGCT TATATTATACGGGTATCTGGGGAACCGAAAGGAGCTCGAAAGAGTTTGGAGCAATATTCGAGAACTGCCCTTTGTTAGAA CTAAAAGTTACATGTTAGCCATTGAAGCATTCGGTAGGATTGGACATCTAGAACGGGCTGAAGAAATTTGGTTAGAAATG GAATCAGCAAAAGGGTTGAAATCTGTAGAGCAATTCAATTCAATGATGACTGTGTATTGCAAACATGGAGTCATTGACAA AGCAGCTAGATTGTACAAAAATATGAAGGCAAATGGGTGCAAGGCGAATGCCATAACTTATCGTCAGCTTGCACTAGGCT GCTTGAAATCAGGTATGGAAGAACAAGCTTTGAAGACATTAGAATTGGGCAAGCGTTTGCCTATTAACAAGAGGGTCAGA AATTCAACCCCATGGTTGGAGACCACTCTTTCAATTGTTGAGATTTTTGCTGAGAAAGGTGATGTTGAAAATGTTGAGAA ATTGTTTGAAGAACTTCATAAATCTAAGTATTGTAGGTATACTTTTGTATATAATACCTTGATTAAGGCTTATGCAAAAG CTAAGATTTATGATCCAAAACTTTTGAGAAGGATGATTCTTGGAGGAGCTAGGCCAGATGCTGAAACATACAGTCTTTTG AAAATTGCTGATCAATTTCGGACCTGATTTTGATTCTGTGTATTATTTTGTTGTCTTTATGTTCACTATATCAATTTCGT TAGCTTCTATTCTATCAAAATCAATTCTAAAATTCAGAAGCTATTCACATAAGCTTCTTCCCATATTTGATTATGATTTT AAAATTAGTTGTAGAAGAGTTTCCAAATATGCACTACACACGTATTGATGCATACAAAGTGCCAA
CDS sequence (LotjaGi3g1v0283500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATAGCATAAGAGCCATCGTACAAGCGAGGTTCGTTGAGGCAATACGTCGAACAGTTGGTGGCATTGAAAGCCATGT CCATTTCAGATTCTTGTGCACCGAATCAACACAACAAACCCAGGATAACCTGTGCCGGAGAATCGAGAAGCTCCCCAAAG GAGAACCGGTTGGATCCGCTCTCCGTAGCTGGATGCGAGATGGCTTCCCCGTTCGCAGCAATGACGTCTTTCACGCCATT AACCGTCTCAGGAAGCTCAAGATGAACAAACGCGCACTTGAGGTGATGGAATGGGTTATTAGGGAGAGACCTTATAGACC TAGGGAACTAGATTACTCTTATCTTGTTGAATTTACAACTAAGCTTCATGGAATTTCACATGGTGAGAAGCTCTTCACTC GTGTTCCGAGCGAGTTTCAGAACGAGTTGCTCTACAACAATTTAGTCATTGCTTGTCTTGATAAAGGTGTCATAAGGCTC TCACTTGAGTACATGAAGAGAATGAGGGAATTGGGTTATCCCATCTCGCACTTGGTTTTCAACCGCCTTATAATCCTGCA TTCCTCGCCGAGTCTCAGGAAGAACATGATGCCCAAATTGCTCACCCAGATGAAGGCTGATAAGGTCACCCCACATGTGT CCACCTACAATATCTTGATGAAAATTGAGGCCAATGAACATAATCTTGAGAATTTGATGAGGTTCTTCAGTCTTATGAAG CTACGACAGGTTGAGCCGAATGAGATATCTTACTGCATTTTAGCTTATGCGCATGCGGTGGCTAGGTTGAACACTGCAGC TGAAACATATGTTGAAGCTGTGGAGAAGTCTATGACAGGAAATAATTGGTCAACATTGGATGTCCTGCTTATATTATACG GGTATCTGGGGAACCGAAAGGAGCTCGAAAGAGTTTGGAGCAATATTCGAGAACTGCCCTTTGTTAGAACTAAAAGTTAC ATGTTAGCCATTGAAGCATTCGGTAGGATTGGACATCTAGAACGGGCTGAAGAAATTTGGTTAGAAATGGAATCAGCAAA AGGGTTGAAATCTGTAGAGCAATTCAATTCAATGATGACTGTGTATTGCAAACATGGAGTCATTGACAAAGCAGCTAGAT TGTACAAAAATATGAAGGCAAATGGGTGCAAGGCGAATGCCATAACTTATCGTCAGCTTGCACTAGGCTGCTTGAAATCA GGTATGGAAGAACAAGCTTTGAAGACATTAGAATTGGGCAAGCGTTTGCCTATTAACAAGAGGGTCAGAAATTCAACCCC ATGGTTGGAGACCACTCTTTCAATTGTTGAGATTTTTGCTGAGAAAGGTGATGTTGAAAATGTTGAGAAATTGTTTGAAG AACTTCATAAATCTAAGTATTGTAGGTATACTTTTGTATATAATACCTTGATTAAGGCTTATGCAAAAGCTAAGATTTAT GATCCAAAACTTTTGAGAAGGATGATTCTTGGAGGAGCTAGGCCAGATGCTGAAACATACAGTCTTTTGAAAATTGCTGA TCAATTTCGGACCTGA
Protein sequence (LotjaGi3g1v0283500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHSIRAIVQARFVEAIRRTVGGIESHVHFRFLCTESTQQTQDNLCRRIEKLPKGEPVGSALRSWMRDGFPVRSNDVFHAI NRLRKLKMNKRALEVMEWVIRERPYRPRELDYSYLVEFTTKLHGISHGEKLFTRVPSEFQNELLYNNLVIACLDKGVIRL SLEYMKRMRELGYPISHLVFNRLIILHSSPSLRKNMMPKLLTQMKADKVTPHVSTYNILMKIEANEHNLENLMRFFSLMK LRQVEPNEISYCILAYAHAVARLNTAAETYVEAVEKSMTGNNWSTLDVLLILYGYLGNRKELERVWSNIRELPFVRTKSY MLAIEAFGRIGHLERAEEIWLEMESAKGLKSVEQFNSMMTVYCKHGVIDKAARLYKNMKANGCKANAITYRQLALGCLKS GMEEQALKTLELGKRLPINKRVRNSTPWLETTLSIVEIFAEKGDVENVEKLFEELHKSKYCRYTFVYNTLIKAYAKAKIY DPKLLRRMILGGARPDAETYSLLKIADQFRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 510 | 475 | 5.2E-272 | – | |
| PANTHER | 36 | 510 | 475 | 5.2E-272 | – | |
| Gene3D | 59 | 194 | 136 | 1.1E-7 | ||
| ProSiteProfiles | 141 | 175 | 35 | 8.122 | ||
| Gene3D | 195 | 276 | 82 | 6.1E-9 | ||
| Pfam | 211 | 254 | 44 | 2.2E-7 | ||
| ProSiteProfiles | 212 | 246 | 35 | 8.089 | ||
| Gene3D | 314 | 421 | 108 | 1.5E-17 | ||
| ProSiteProfiles | 316 | 346 | 31 | 7.52 | ||
| Pfam | 319 | 345 | 27 | 0.06 | ||
| ProSiteProfiles | 351 | 385 | 35 | 11.367 | ||
| Pfam | 354 | 397 | 44 | 2.3E-10 | ||
| TIGRFAM | 355 | 386 | 32 | 2.7E-8 | ||
| ProSiteProfiles | 386 | 420 | 35 | 6.325 | ||
| Gene3D | 422 | 506 | 85 | 5.1E-8 | ||
| ProSiteProfiles | 428 | 462 | 35 | 6.084 | ||
| Pfam | 466 | 477 | 12 | 1.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0283500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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