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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0287300 |
| Transcript ID | LotjaGi3g1v0287300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G08500.1 myb domain protein 83; Swiss-Prot: sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46; TrEMBL-Plants: tr|A0A151UEN0|A0A151UEN0_CAJCA Transcription factor MYB46; Found in the gene: LotjaGi3g1v0287300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:58051355..58053169) extracted from Lotus japonicus Gifu genome v1.2.
TAGCAGCTAGTACAATGAGGAAGCCCGAGAACAAGAGCAAGGTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAGAAG CTGACGAAGTACATGGTGAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGGTTGCAAAGGTGTGGGAA AAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCCCAAGAACAGGACCTCA TCATCCATTTGCATTCCCTTCTTGGAAACAGGTCAATCAATTTTTCTAGTCCATATATCCCATATTTCTTAGTATTACCA AATTTAGATTTATGCATCATTAGCATTAACAACTCATCCACTAAGCTAGCACACATGCATATTTTCACATACACTGTAAA ATCAAGTTATATCCTTGAAGCACCTATCCATTACCTTTACCTGGCAATAAATTAAGAGCAATAAAGACTGACAGATGTGT CGTGTGTTCGAGGGCTGAAACCCTTTGTCTCCATTTGGTATCTCATTCTCTGTCCCACCAATTATAGGCGCTGCATATCT GTATTGGTCAAGGCTATTCATTAGCTTCCATGCAAAGCATTCCTTAGTTACGCCCACACACTATTTAAGATTAACTTCTA CTATAAGCAAATTGTCCTGACATTTTAATATGTTTTCACTTTATAAGATGGTCTCAAATAGCGGCACGCTTGCCAGGGCG AACTGACAATGAAATCAAAAACTTTTGGAACTCCACAATCAAGAAAAGACTCAAGAACTTGTCAACAACCTCAACCTCAC CAAATGCAAGCGAATCCACTTCTGAGCCTAACAAAGACCACAACATGGGAGGGTTTAATATTTCTGCACAACATCAATAT GCAAGCTACATGCCCATGTTCAATTCATATCCATCATCACTATCAATGCAAACCACCACAGTTCTCAACACCATGATTGA AGGGTTGCCTATGCTGGAGCATGGAATTATAAACATGCCACCTAATGGAGGATACTTCAACAGTACAGGACCATGCTTCT CACAAAGTGGAGTAGTTGAAAATGACAATAATGGAGTGCTTGGGAGTGTAAATATTGGAGTAGAAGGGGATGTGTTTGTT CCTCCTCTAGAGAATTATGTTAGAAATTCTTGTACTAACCATAACCTGATCAGAGTGGAGAGTATGCGCAAGAAAGAAAC TAACAATAGTTACTTTGATGACATAAACAACAATATCCTTCATAATAATTGCCACAATAAGAAATCTGAAAATGGAGTAG AGAATTTATTTCAAGAACAGTTAACCATGGGAGAGTGGGACTTTGAGGAGTTGATGAAAGATGTTTCTTCCTTTCCGTTT CTTGATTTTTCAACCTGATCCAATCACAGTTCTCCTTTTCCTCTCCCCCCTCCCCCTTATAAGACCTTCTGGGGATCCCA ATTGCCAAGTTAAAACCTCCAGAAACTATGAACTTCTATAAAGAGTGATCTCCTTACACCTTGTAACATATTTTGGCCAT TATACCAATTTACAAATTAACGAGTGCAAGTAGGTCAGAAATTAAAGTCCAACCTATATTCCTGGATATCCACAGATGAT ATCGTGTAATTAATCTTGCAAGTAAATTTGTGTATTATCATGATATACACTGAAATTGTAGTTAATTACAATAATCTTTT ATCTGTGAAAAGAAGCCTGAATAAATTTTTGACACATTATTTTCTTTGTTCAACTCAATTTCTTGAGGATAGTATTTGTA CTTGTTATTATATATCAAATTGTTAACCTGAATTAATAGGCTTTGTGAGTGTCCA
CDS sequence (LotjaGi3g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGAAGCCCGAGAACAAGAGCAAGGTTAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAGAAGCTGACGAAGTACAT GGTGAACAATGGACAAGGTTGTTGGAGCGATGTGGCAAGAAATGCTGGGTTGCAAAGGTGTGGGAAAAGTTGTCGGCTTC GATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGTGCATTCTCACCCCAAGAACAGGACCTCATCATCCATTTGCAT TCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCACGCTTGCCAGGGCGAACTGACAATGAAATCAAAAACTTTTGGAA CTCCACAATCAAGAAAAGACTCAAGAACTTGTCAACAACCTCAACCTCACCAAATGCAAGCGAATCCACTTCTGAGCCTA ACAAAGACCACAACATGGGAGGGTTTAATATTTCTGCACAACATCAATATGCAAGCTACATGCCCATGTTCAATTCATAT CCATCATCACTATCAATGCAAACCACCACAGTTCTCAACACCATGATTGAAGGGTTGCCTATGCTGGAGCATGGAATTAT AAACATGCCACCTAATGGAGGATACTTCAACAGTACAGGACCATGCTTCTCACAAAGTGGAGTAGTTGAAAATGACAATA ATGGAGTGCTTGGGAGTGTAAATATTGGAGTAGAAGGGGATGTGTTTGTTCCTCCTCTAGAGAATTATGTTAGAAATTCT TGTACTAACCATAACCTGATCAGAGTGGAGAGTATGCGCAAGAAAGAAACTAACAATAGTTACTTTGATGACATAAACAA CAATATCCTTCATAATAATTGCCACAATAAGAAATCTGAAAATGGAGTAGAGAATTTATTTCAAGAACAGTTAACCATGG GAGAGTGGGACTTTGAGGAGTTGATGAAAGATGTTTCTTCCTTTCCGTTTCTTGATTTTTCAACCTGA
Protein sequence (LotjaGi3g1v0287300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKPENKSKVRKGLWSPEEDEKLTKYMVNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEQDLIIHLH SLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSTTSTSPNASESTSEPNKDHNMGGFNISAQHQYASYMPMFNSY PSSLSMQTTTVLNTMIEGLPMLEHGIINMPPNGGYFNSTGPCFSQSGVVENDNNGVLGSVNIGVEGDVFVPPLENYVRNS CTNHNLIRVESMRKKETNNSYFDDINNNILHNNCHNKKSENGVENLFQEQLTMGEWDFEELMKDVSSFPFLDFST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 7 | 59 | 53 | 16.243 | ||
| PANTHER | 7 | 308 | 302 | 1.8E-123 | ||
| PANTHER | 7 | 308 | 302 | 1.8E-123 | – | |
| Gene3D | 9 | 65 | 57 | 2.8E-17 | – | |
| SUPERFAMILY | 10 | 106 | 97 | 5.47E-28 | ||
| SMART | 11 | 61 | 51 | 4.3E-11 | ||
| Pfam | 12 | 59 | 48 | 1.1E-12 | ||
| CDD | 15 | 59 | 45 | 1.18106E-9 | ||
| ProSiteProfiles | 60 | 114 | 55 | 25.066 | ||
| SMART | 64 | 112 | 49 | 3.6E-15 | ||
| Pfam | 65 | 108 | 44 | 1.5E-13 | ||
| Gene3D | 66 | 139 | 74 | 3.8E-20 | – | |
| CDD | 67 | 107 | 41 | 6.14384E-11 | ||
| MobiDBLite | 116 | 138 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0287300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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