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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0289700 |
| Transcript ID | LotjaGi3g1v0289700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein FAR1-RELATED SEQUENCE 4; TAIR: AT1G76320.1 FAR1-related sequence 4; Swiss-Prot: sp|Q6NQJ7|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4; TrEMBL-Plants: tr|A0A151SUJ2|A0A151SUJ2_CAJCA Protein FAR1-RELATED SEQUENCE 4; Found in the gene: LotjaGi3g1v0289700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59095537..59102089) extracted from Lotus japonicus Gifu genome v1.2.
TTCTAATGTAAAAAAAAGTTATAATATACCAAAATAATGAATCTTGAAAGTTTGTGTTCTGATGACTGCAACTTCCGTTT CAGATAAAAGTAAGCTGGAAAGGCGACTCGTGAAGCAGCGAGTTATTTCCTCTACAGCTAAATCAGTAGACGAGGTTTAT TCAGAATAAGTCCTTGTTCATCGTGTATTATAGGACAATTACCCACATATAAACCCTAATTTTCTTTCCAACCCAATTTC AAAGAAGAATGGAAGATGTTACTCTAATTCCTACTGGTTAGGGCTTTGATCCGAGCGTGCGGCAACGGGTTTCTCACATC AGAGGCGGCGAGGGGACGAACAAGGGTTCAACCCGAAGTGAGTTCACCGCTGCTTCGTCTAAATTTCTCTTAATCTTTCT ATTCTATTTGTTTTTTCTTAAATTTGTCTTAGTCTTTCTATCGATTTCAATAAATGATAAATTATCATTTTGAGTTAGCT TCCGCTTGAACTATGCAATTTTGTGGCTACTATCTGCTGATGTATAAATATTTGTAAAACATTGCTCTGGAATTGGTGAT TATGCATTTTCAGATTGATGAATTTTACTTGGAATTCTTTTATGGCAATTTAGGATTTGGATGTTAGTATTTTGAATCAT GTTTTGGAAGTTCCCAATGCAGAAGGCTACTTAATCATGAATGGAATGTGAATTGCATGCTAGCCATTTGGATTATTTGA AAATAAGGAACGATATGTCTGAAACGTTGCATGAATGAGAAAGTTAATATCTGCTTCCGTTTTTCTTTTTATCGTAAAGC CAGCAGCCAGCGATTGCGAAAGATAAATAGAGAATTACGCATAAATAGATATAATTAAATGGTGATATGGAGAGAGTGAT GCTATTTCTTGCGAAGGACACTGCAACGAAATTCACTATTAAGCATTTATCTCCAATATACACTATTGTTTGAAAGAAAC CACGGAGATGTGCTGATATTTTAGGAATTAATAACCAATCAAATTGATTCGAAAATCGTTTGTGTGTTTTGTTTCTGTAA CAATCAGCATTTTCCATATGGAAATACTTAGTTTTTTGGTGCTTTTTTGTTTTAATGTGTGGACTGTCTTTTTTCTTTTC TAATTCTATAAAAAACTGCATATTTATATCTGAATGACAATTTTTTCACTCCTGGTACAATTTCTCAACGAAGCTTGCCT CTCCATTTTTTCAGGTATCCTTGTTGCTGGATAATTGAGCAGACCGTTGTATCTTTTAGAAGTGACTTGGAAGTGGAACC TGAATGTTGCTGTGGTAATTATGGATTCTTCTCTTGTCTTGGCTAACCCAGTTTTGGAGCCTCATTATGATATAGAATTT GAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCGGGGTTCGGTACTGCTAAGTTGAGCAGTCG CCGGTCTAGGGCGTCGAAGGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATG CAATTAATCCACGTCCCTCTCCAAAAATTGGTTGTAAAGCTAGCATGCATGTGAAGAGAAGACAAGATGGCAAGTGGTAT GTCTATAGCTTTGTGAAGGAGCACAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGTCACCGGAGTTCTGA CCCGTTAAGTAATGATGTTCGGATGCGAAGACGGAAGAACTCAACTGCAGGTTGTAAATTATTTGGTGCATATCAAAATG TTGATTGTTTAGAGAACTTTATGAAACATCAACATGATAAAGGACGGAGTTTGGTTTTAGAAGCAGGGCATGCCCAATTG CTTCTTGAACTCTTCATGCACATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACT GAGAAATGTGTTCTGGGTTGATGCTAAAGGGTTAGAAGATTTTGCTTATTTTTCTGATGTTGTCTCTTTTGACACAACAT ATTTCACAAGCAAGTATAAAATACCCTTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCAACATTGCTTGGCTGT GCATTGATTGCCGATGAGACAATATATACTTATGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGCGAGCGAGCTCC ACAAGTCATTCTCACTGACCAAAATGATGCTATTAAAGCAGCGGTTGCTGCTGTTCTTCCAGGAACACGTCATTGTTTTT GTTTATGGCATGTTTTGGAAAAGATACCAAAACAACTTGAATTTTTAAGTGCATGGCATGATAGCTTCATGGAAAAATTT AACAAATGTATATATAAATCATGGACGGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGGTTTAACCTTAA AGAGGTTGAATGGGTCCAATCCTTGTATGATGATCGTACATTTTGGGTGCCAACTTTTATGAGAGATATTTCTTTTGCTG GCTTGTCTACTAGTTCAAGGTCAGAAAGTTTAAATACTTTGCTTGACAACTATATCCATGCTGATACTTCGTTGAAGGAA TTTATAGAACAGTACCAAGTGATTCTTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCATGGCATGAAAC ACCTGAGTTGAAATCTCCTTCCCCTTTTGAAAAACAGTTGTTGTCAGTTTACACACATGAAATTTATAAGAAGTTTCAGT TTGAGGTTTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGATGGTGTGACTACTACTTATGCTGTAAAAGACTTT GAAAATAATCAAAACTATATGGTAGAATGGAACACATCAAACTCAGATATTTGTTGTTCATGCCACTTGTTTGAATATAA AGGCTACCTTTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAA GATGGACAAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAATTGGAAGAGATTCAATCCAAGGTCCGGCGATTCAAT GATTTATGTAGACGAGCCATTATATTGGGTGAAGAAGGTTCTTTGTCTCAAGAAAGTTACTATACTGCTTTAGGTTCCAT AAGTGAAGCTCTGAAGCAATGTACAAATTTGAACAACTCTGTTGAGAATGGTATGAGACCTGATGCCATAGCTACCAATG TTGTCTGCAATGTTGAGTATCAACCTTTTATTACATCTAACAATAAGGTCCCTGATCCTACTACGGCTAAGAAGACTGTG AGGTCTGATGTGGCTGGTACTGGTAGGAGTCCAGGAACTGTTGAAAATAGTGAAGGAAATAAAGGAAAGGTCAGTTAGAT TGGTGATTAATGATTGACCTCAGTAATTTTGGTGTAATTGACCTTCTTATGTTCATTTTGTTTTAAAGTTGTGTCTTATA AGTTTGCTTTCTGTATGCTACAGGTATCTCAGCTTGAAGCAGTGAGCAGGAAAGACGGTTTTCAAGAAATGGTATGCTTT GCCAGTATGCCTTAACTTTTACTGTTGCCATCAGAAGCATCTAGTTATAATATGTTCAAATTAAATAACTTTTGCTAATT CATCAATTTCATAAAAATGTTTGTTTTCCTTTCCAAGATTGAACTGTGGGTGACACTTATATTTAAGAAGTGCACAGAAC AGGTTACGGTATTCTCAAGAAGTAAAAAATTTAAATGAAAACAAAGAGAATACTAAAGAAACAAGGATGCTAGGACCCAA AACACTACCCAAAAGTAAATATGGGGCAAGGGTATCCCTTTGAAGATGTCTTTTAACTTCTCCAACCTCAGTGTTTTGTT TCTAAGATAGACTTACCCATGACACTCATGGGGGTAAAGACTAGAGAGTAGTATAAAGCCTGCAAGTCTGTTGCATCTTA TTGCACTGATTTTTATTAATTAGAGATTTTAACCATCCAATATAGCATTTGATGGTGAATAATGCTATATTAGAAGTTGG TTTAATATAGCATTGGTTATGCTAGGATGTTATGTTATTTGGGGAGTTACAATACCCAACTTCATTCTTGACCTGTAGGA TAATTCAGTGCTAGTTCTGTGTTTCAGGCTTATATAAAGAATGGTAGATTCATGTTGAGACTATTTGTAGAGGGGAAAAA AAAGCACATCACGTAGTGTTTAGATTTATGAGCAATTAGATTGACTATGCTAGATGATTACTTCTGTACATCTTGTATAG AAGGACCTGATTGGTGCATATTGTGCATCTGTACATCCATTTGATATAATACTGATATACTTTCCCACACTTCGGTTAAC ATTGAATATCTGTATTCTTCATGAGATCATTCTATAAATTGACATTTACATTGTTTGGTTGAGGCTGTGAAGGGGAATAG AGGTGAGGAGGGGAGCAAAGGTTTATATTTTTGAACTATGTTGTCTCCCCTCCAAAAGTTGTGGCATTTGAAGGGAAAAT AATTCATTTAACATTAATACTCTTACTTATGTTTTGAAACTTAAAATTATATTTTATAAATAATGGCAATAAAAGTAAAA ATGTTTTAAAATCCTCCCCTTCTCTCTTTAACAAGACAAGAAAGAAGTTATTTCACCCTCCCCTCCCTTCCCTTCCCTTC CCCAGTTCCCTTCCCCCCCTCATTTCCTCTTTAACCAAACATGATAACATTTAAATTACTTCTCCTCCCCTCCCATCTCC TTCTTTGAACCAAACACACCTTTAGTGATATCAGAGTATGTTATGGTTTCAAATTTAATGTCTCTATATGGTTGACAGGA GCCAACTGATCTAAGGTCACACAATGTCATGCCGATGCAGTTTCACAGTATGGTGCCACCCCTATTCCATAATGTTTCGC CACCGTTTCATACTGCAGCTTCAACTCATTTGCATGAGAACCGTCTTCCTCGTTAGCTGTATTTTTCTAAGAAGATCTGT GTTGTCCAATGTATTATAGAACTGTACATAAAAGATGCTAATTGTGAAAGGCATACATCTTTCGCTTATGGTATCTGTTT TGCAGTGAGGGTTGACAGCAATTGAGTTCGATAGTTTTGCTGCTAACTTGCGGACATTTATATTCCAAAAGTAGGCTCAC CATCGACGTAAGTTTTATGTATTCATGTTCTGTTAGGTTTGTGCAATGTGGTGGTAGATGCATATCGTTTTGACTGTATG TAGTGTTGATGTTGCGCACCTTAGTAAGACATATGGAATGAAATTGCAACTCAAGGATTTCGATTTGTTCTAAGACCATT GTTTTAGGATGTTGCCATGTAAAGCCACTCTTAAAAATAAAAATAAAAATAAAAATGCACTTACTCCCCACAATTACATT ACTATGGTCAATAAAAGGTGTGTACCTGTCCTTTCATTCTTTTTTTAGCATTAAAGCCACTAATAGTGAGACAGTGTGAG GGGTTCAGATAGTGTTACTAGCATCATGCATTCACCTATATGTTAGCGGTTTAGGTCTTAAAGTTCTTGTTCTATGAAAG GTTTTACCTCACCACAACCATTGATGGAATGGTTAAACTCATAGTATGTGTATTCTTGGTTGGAGTATGTATCAAATAAT TTCTAATCAACAATTTTAAGAAACTAGTGAGTGGTCCTTTTTTCTTTTTGTCTAGAATAGTAATACAAAGGATGTGATAG GATCACTAAGACCTTAAAGCCTAAATTATTTCAATGTGTGATCGGCGTCTAGAAAATCCTTATTCGGAAATATGAGTTTG TTTCAAGTAAAGAATATGACTTTGACAAAAAAAATGGCAAGCTGAAATTTGTAGAGTTCTTTTGCTGTATTTGTTGGTTT CCTGCTTCTTTTCCAATCTTTTGCAATGAAATAACTAATTGATATGAAATGACTACTTATTCTTTAAAAAAAACAAAAGA AATAACTACTTATTGATATGATATAAGATGATTTGCATTAATTTTCCAGATTTTTTCTTCTTCCCCAGTTCCCCTCATTT GAATGCCATTTCTAGGTGTATGCAATGTGGCTGTGTATCAATTATTCAATTCTTTTGATGTTAATCTGGATCCTTGGTTT GATGGTCTCTTTAATGCTCATTTCTTCTTATGGTCTTCCCTACTTTACACACACATATATCCATAATCCCGAATGGGTCA ATTGCATTGAACAAAGTATTAACCAAGTCATTAATAAAAAAATGATAAGCAGATTGTGCATGCATGTGAAACCAAATAAA TTAATAAACTGGTCCTGAAAGCTGTTCATTGAACTCTCTGAAAACCTGGAACAATTGTTTACTTTGGAAGAGGATCTTTT TCTCCTGCATTTAAGCAAATGTCGGCCTAGAAAACCCTAAAATTTCTTATAATATATCTCATGCTTGTCGGGATGCTTAC CAAGCAAATTGTTTATCATTAATTTCGATTGAATTATTATGCCCAAAACTCTGCGTTTGTTCATGCAATTATATCGCTGG AAATTAAGATCAAACGCGTAATAGCCCTTTTTAGATGGCATGTTTTGTGCGCATGATGTGCACAATATTAATG
CDS sequence (LotjaGi3g1v0289700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTTCTCTTGTCTTGGCTAACCCAGTTTTGGAGCCTCATTATGATATAGAATTTGAATCTCATGAAGCTGCATA TGCATTTTACAAAGAATATGCTAAGTCTGCGGGGTTCGGTACTGCTAAGTTGAGCAGTCGCCGGTCTAGGGCGTCGAAGG AATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGTCCCTCT CCAAAAATTGGTTGTAAAGCTAGCATGCATGTGAAGAGAAGACAAGATGGCAAGTGGTATGTCTATAGCTTTGTGAAGGA GCACAATCATGAGCTTTTACCTGCTCAAGCTCATTTTTTTCGGAGTCACCGGAGTTCTGACCCGTTAAGTAATGATGTTC GGATGCGAAGACGGAAGAACTCAACTGCAGGTTGTAAATTATTTGGTGCATATCAAAATGTTGATTGTTTAGAGAACTTT ATGAAACATCAACATGATAAAGGACGGAGTTTGGTTTTAGAAGCAGGGCATGCCCAATTGCTTCTTGAACTCTTCATGCA CATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTGAGAAATGTGTTCTGGGTTG ATGCTAAAGGGTTAGAAGATTTTGCTTATTTTTCTGATGTTGTCTCTTTTGACACAACATATTTCACAAGCAAGTATAAA ATACCCTTGGTACTTTTCATTGGAGTAAACCATCATATTCAACCAACATTGCTTGGCTGTGCATTGATTGCCGATGAGAC AATATATACTTATGCCTGGTTACTGCAAACATGGTTAATAGCAATGGGCGAGCGAGCTCCACAAGTCATTCTCACTGACC AAAATGATGCTATTAAAGCAGCGGTTGCTGCTGTTCTTCCAGGAACACGTCATTGTTTTTGTTTATGGCATGTTTTGGAA AAGATACCAAAACAACTTGAATTTTTAAGTGCATGGCATGATAGCTTCATGGAAAAATTTAACAAATGTATATATAAATC ATGGACGGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGGTTTAACCTTAAAGAGGTTGAATGGGTCCAAT CCTTGTATGATGATCGTACATTTTGGGTGCCAACTTTTATGAGAGATATTTCTTTTGCTGGCTTGTCTACTAGTTCAAGG TCAGAAAGTTTAAATACTTTGCTTGACAACTATATCCATGCTGATACTTCGTTGAAGGAATTTATAGAACAGTACCAAGT GATTCTTGAAGATAGACATGAAGAGGAAGCCAAAGCAAATTTTGATGCATGGCATGAAACACCTGAGTTGAAATCTCCTT CCCCTTTTGAAAAACAGTTGTTGTCAGTTTACACACATGAAATTTATAAGAAGTTTCAGTTTGAGGTTTTGGGTGCAGCT GCTTGCCATCTTAAGAAAGAAAGTGATGGTGTGACTACTACTTATGCTGTAAAAGACTTTGAAAATAATCAAAACTATAT GGTAGAATGGAACACATCAAACTCAGATATTTGTTGTTCATGCCACTTGTTTGAATATAAAGGCTACCTTTGTAGACATG CTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATCCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATG AGCAGGCATCCTATTGGTGAAAAATTGGAAGAGATTCAATCCAAGGTCCGGCGATTCAATGATTTATGTAGACGAGCCAT TATATTGGGTGAAGAAGGTTCTTTGTCTCAAGAAAGTTACTATACTGCTTTAGGTTCCATAAGTGAAGCTCTGAAGCAAT GTACAAATTTGAACAACTCTGTTGAGAATGGTATGAGACCTGATGCCATAGCTACCAATGTTGTCTGCAATGTTGAGTAT CAACCTTTTATTACATCTAACAATAAGGTCCCTGATCCTACTACGGCTAAGAAGACTGTGAGGTCTGATGTGGCTGGTAC TGGTAGGAGTCCAGGAACTGTTGAAAATAGTGAAGGAAATAAAGGAAAGGTATCTCAGCTTGAAGCAGTGAGCAGGAAAG ACGGTTTTCAAGAAATGGAGCCAACTGATCTAAGGTCACACAATGTCATGCCGATGCAGTTTCACAGTATGGTGCCACCC CTATTCCATAATGTTTCGCCACCGTTTCATACTGCAGCTTCAACTCATTTGCATGAGAACCGTCTTCCTCGTTAG
Protein sequence (LotjaGi3g1v0289700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSSLVLANPVLEPHYDIEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPS PKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLSNDVRMRRRKNSTAGCKLFGAYQNVDCLENF MKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFAYFSDVVSFDTTYFTSKYK IPLVLFIGVNHHIQPTLLGCALIADETIYTYAWLLQTWLIAMGERAPQVILTDQNDAIKAAVAAVLPGTRHCFCLWHVLE KIPKQLEFLSAWHDSFMEKFNKCIYKSWTEEQFEKRWWKLVDRFNLKEVEWVQSLYDDRTFWVPTFMRDISFAGLSTSSR SESLNTLLDNYIHADTSLKEFIEQYQVILEDRHEEEAKANFDAWHETPELKSPSPFEKQLLSVYTHEIYKKFQFEVLGAA ACHLKKESDGVTTTYAVKDFENNQNYMVEWNTSNSDICCSCHLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAM SRHPIGEKLEEIQSKVRRFNDLCRRAIILGEEGSLSQESYYTALGSISEALKQCTNLNNSVENGMRPDAIATNVVCNVEY QPFITSNNKVPDPTTAKKTVRSDVAGTGRSPGTVENSEGNKGKVSQLEAVSRKDGFQEMEPTDLRSHNVMPMQFHSMVPP LFHNVSPPFHTAASTHLHENRLPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 713 | 707 | 0.0 | – | |
| PANTHER | 7 | 713 | 707 | 0.0 | ||
| Pfam | 29 | 114 | 86 | 1.4E-29 | ||
| Pfam | 227 | 320 | 94 | 2.0E-27 | ||
| ProSiteProfiles | 506 | 542 | 37 | 10.484 | ||
| Pfam | 512 | 540 | 29 | 8.5E-8 | ||
| SMART | 517 | 544 | 28 | 1.1E-7 | ||
| MobiDBLite | 648 | 686 | 39 | - | – | |
| MobiDBLite | 669 | 684 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0289700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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