Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0300800 |
| Transcript ID | LotjaGi3g1v0300800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT2G44300.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|O64864|YLS3_ARATH Protein YLS3; TrEMBL-Plants: tr|I3SEA2|I3SEA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0300800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62694589..62696300) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATTGTTCGTTTTCTTGCTTTCACAAATCAAAAGGTACACTAAATTTTTAAGCAGATTGCTGTCATCTGTTGCTAGT CCCAACCCCAATCATAAACTAACTTGAAATCAAGTGTGCTCATAAGTAGGCCATTCAATAGAAAATTGCAAAACCCCATT TTAAGTTCGAAACTCACTCAAACACCGCTCTCTTGTTAATCTTATAAACTAAACCATTCTTCACCAACAACACAAAACCA CTCTATCAATATTTAAGCAATCCCAATCTCACATTCACTTCAAGTCTTCTACCACTTCCTATCTCTAACCAAAATGTTCA GCCACAACAAAAAAGCCCTTTTGCACTTCATGTTGCTAGCATCAATGATAGTTGGCATTGCAATGGCAGATTCATCAACG GACAAACAGGAATGTACTGAGCAACTGACAGGGCTAGCAACATGCCTGCCTTATATTCAGGGTGAATCAAAAGCTCCGCC GCCAGATTGTTGTAGCGGTCTCAAGCAAGTGCTCAAGCAAAACAAGAAGTGTTTGTGTCTTATTATTAAAGATCGTAATG ATCCAGATTTAGGTGGTTTAATGATTAATGTGACTTCAGCTTTGAGCTTGCCAACAGTTTGCAATGCCCCTGCCAATATT TCCAAGTGCCCAGGTAACATTTTTATTGTGGCCATACAATTTGGATCAGCTTCTCTTTCCTCAGAGTCAATTCTGGCATG CAGAAGCTTATCACAGAAGCTTTTACCCAGAATTGATTTTGATTTTAAAATCAGTTGTAGAAGGATTTCCAAACATACAC TAAGACTGATTTTGGGCCATGGTGTAAAATAGTAGTTTGATTCTTTTGTCATTTTGTAATGAAAGCAGAGCTTCTGCATA TGGATCCCAAATCAAAAGAGGCTCAAGTTTTTTATCAATTGAACAAAGGCTCTAACAACAGTGGCCCAAGTCCTGCACCA AGTACTTCTGGTAAGAATTATGATTTCTTCACACCTCATTTTGAGGTGGAAGGAGGTGGAGGAGGAGAGAGATAGGAAGA AAAGAAAAAGTATGAGAGAGAAAGTATGAGATGTGATAGATGATAAGAGGAGAGAGGTAGAAACAAAAATATGTGGAAAT GAAGTGTTTAAAAGATGAGGTGTGTATATATCATTACTCCTGATATATTACAACTTACAATCTTTGAAATTGTTAAAAAT TATGGACCACAAATTGAAACATTGCAAATTCTTGTGATATGTTAATATGAAAGCATAAGTGCCATTCATTTATGTAATAT GTGGCTGCAGTTGGAGGAAGTGCTGCAAGGAGCCAGACAACCACTGCCACACAAAAGAATGATGCAATGTGCAAGGAGAA AAGATTGTTCGGGTTTGACAATTTGGCTGCAGGGCTTCTAGTTTGGCTCTTATTTAGCTTCAGTTCCATGGTGTAAATTG TTTTCTCCAACTTATTGTAAAAGAATAGAGCAAAAATAAGGGAAAATATCAGTCATATTGTTGAGAATAAACACTCACTT TACTTTATTAGAATACAAGTGATCTCAGGTTTGCTACTCTAAAGAAAGTCCCATCACTTGACTATGAAAACTAATTTCGA GAATAGTCATTTTTATGTATTATCCATGCAAACAACTTCAATAGAACTTTTGCTTGAAAAACTAAAGGTTTCCATTTATG ATTCAGAAACAAAATTGATGACCATATTTCAC
CDS sequence (LotjaGi3g1v0300800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGCCACAACAAAAAAGCCCTTTTGCACTTCATGTTGCTAGCATCAATGATAGTTGGCATTGCAATGGCAGATTC ATCAACGGACAAACAGGAATGTACTGAGCAACTGACAGGGCTAGCAACATGCCTGCCTTATATTCAGGGTGAATCAAAAG CTCCGCCGCCAGATTGTTGTAGCGGTCTCAAGCAAGTGCTCAAGCAAAACAAGAAGTGTTTGTGTCTTATTATTAAAGAT CGTAATGATCCAGATTTAGGTGGTTTAATGATTAATGTGACTTCAGCTTTGAGCTTGCCAACAGTTTGCAATGCCCCTGC CAATATTTCCAAGTGCCCAGAGCTTCTGCATATGGATCCCAAATCAAAAGAGGCTCAAGTTTTTTATCAATTGAACAAAG GCTCTAACAACAGTGGCCCAAGTCCTGCACCAAGTACTTCTGTTGGAGGAAGTGCTGCAAGGAGCCAGACAACCACTGCC ACACAAAAGAATGATGCAATGTGCAAGGAGAAAAGATTGTTCGGGTTTGACAATTTGGCTGCAGGGCTTCTAGTTTGGCT CTTATTTAGCTTCAGTTCCATGGTGTAA
Protein sequence (LotjaGi3g1v0300800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSHNKKALLHFMLLASMIVGIAMADSSTDKQECTEQLTGLATCLPYIQGESKAPPPDCCSGLKQVLKQNKKCLCLIIKD RNDPDLGGLMINVTSALSLPTVCNAPANISKCPELLHMDPKSKEAQVFYQLNKGSNNSGPSPAPSTSVGGSAARSQTTTA TQKNDAMCKEKRLFGFDNLAAGLLVWLLFSFSSMV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 8 | 174 | 167 | 7.8E-57 | ||
| Phobius | 8 | 20 | 13 | - | – | |
| PANTHER | 8 | 174 | 167 | 7.8E-57 | – | |
| Pfam | 15 | 112 | 98 | 1.6E-15 | ||
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 172 | 147 | - | – | |
| Gene3D | 31 | 112 | 82 | 8.2E-15 | – | |
| SUPERFAMILY | 32 | 113 | 82 | 2.98E-17 | ||
| PRINTS | 33 | 49 | 17 | 1.5E-5 | ||
| SMART | 34 | 112 | 79 | 4.1E-8 | ||
| CDD | 41 | 104 | 64 | 2.02964E-18 | – | |
| PRINTS | 54 | 68 | 15 | 1.5E-5 | ||
| PRINTS | 90 | 107 | 18 | 1.5E-5 | ||
| MobiDBLite | 133 | 164 | 32 | - | – | |
| Phobius | 173 | 191 | 19 | - | – | |
| Phobius | 192 | 195 | 4 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid transport | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi3g1v0300800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…