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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0311600 |
| Transcript ID | LotjaGi3g1v0311600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G11440.1 myb domain protein 65; Swiss-Prot: sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB; TrEMBL-Plants: tr|A0A151RGG1|A0A151RGG1_CAJCA Transcription factor GAMYB; Found in the gene: LotjaGi3g1v0311600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66019038..66024564) extracted from Lotus japonicus Gifu genome v1.2.
TACAATTAATTTATAACATTGAGTTAGAAGATCAATTTTGGGTGGGAGTACAAACATTGATTGAACCATGAAGTGAAAGG TGGTGTGTGTGTTACTTGGTGCTAGTACCATTTCTATATCTCTTCTCTCTCATTCTCTTTCTCCCTTCACTTCATTCTTT TCCTCTTCAACACAACACCCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACTCGCACACACGC ACAATCATCTTCGACATTGGAGTCTTGCTGTGAATTTTCCTCCATGTTCCTCTCTCTCTGAGGATCCTCTTCAACCCACG GTTCGTAATTCCAATTTCAAAACCCATCGAATTTCATTTCTCATCGTTTTCACCTCGTTCTTCCTTCAGATTAGGGTTGT TACTGCAAGAAACACACACTTCGTTTATCGATTTCTGAATTTTGAGCTGGTTTTTCTTGAAACTCACTCGTACTTTTGTT TTGTTTTGTTTTCTTCAGTTTCTGAGCTTGATTGAGCTTCTGATTCAAGCTTCTTCGCAAATTTGAGCTAGTCGGCGTTT TGGAATTTTGCGTGACACCTCTATCTTCAGGTATTGTCTTCTAGCGTTCTTTGTTTTTTCTTCTTGTTATGGTGCTGCTA TTTTATTTATTTGGTAGAAATTTTGGGATTGTTAATCATTATTAGGACACTTTGATTTGGCTTTTTGTAATTAATATAGT AATAAATGTGTACTGTACTACTGTATTGTACTTAGTGGGAAAAATGATTTGGTGTTATGTGTATGATTGACCTTCTTGGT ATTTTAGGGGTGGAAATTGGGTGATGATTTTTCATGTATTATAATCATGTGTTGACATTTTATTTATTTATATATTTGAT TCCGGATTAATAAGCATAATTAGATTTGCACTGTAATGGAATATCATGCTTTATTTCTTTTTATGGGTTTGGAAAATCTG TGTTTTCCGGGTCCAGAGACAAGACAGGCATCATGAGTTACACAGAGTCAAATTTTGTTGAATTAGAAACTTTATTATTG AACTAGATATAAACCCAGGTGCTTAGTTATTTTTGAAATAAAGGACGTTATTTTACATTCAATAGTCAAACTTTGTATGC AAAATTTTCACCCGTTAATGTATGATATTATTTTGGAGAAATGAAATTTATAGAATATACCTCAAAGAGCTACCTATATA TCTTTTAAATCGAATTAGTGTGATAACATAATATAAACAGATATTTATATAGAATAGATACTTAAATTAAATAGGGAAGG GGGGAAAAGACTCTCCAAATGGAGTAGAAACAAATTTGTGATTTATTCAAGTCAATCATGAAGAGCAAAACCACCTTTTA ATGAAGAAGTATAACAGACAAATTAGATCGATAAACGGACACTTACAACTGAAGGAAACACACAAGCTGATTTGCTAATG TGGCAAAACAATAGCTAAGGTGTCAACGTTATAATTTGTACTGCAAAATTAATATTTTATCATAAATTATAATTAAAAAA ATTTTATGTTACATACTCACTACTAACCATCTTTCATCTTTATGAGAGCATGCAGCTGCTTGGCTAATATGTTGCTCCCA GTAATTTTCGTTTCCATTTAAGTGTTGTTGTAATTCTGTTTAGTTTCTGAAGCGTCTTCATAAAGGTCATATATTCTCTT GTTTTCTTTTTTATATGAACCATTTAATATCACTGTGCTATCTTGATGTGGTTTGCTACCCATTTCTCATGAAAAAGAAA TATCTGAAAATAAAGGAGTAAAATGAAATTTAGTGGCTGTGAATGCAAATGAAAGACCTTTATTAGTGTTATCTCTGTTT TCTTTCGAATAATCGAAGGCTTTCCCTTGTGAAATGTTTTGGCAGAAACCATATTAACAGAGGATGAGAATGGTGAAGAG TGAGATTGAAGATGAGGTGCTTTCTGACTATCACACTGGGTCACAGTTGAATGATGAGGGTTATGAAGGACGTGTCTGCG GAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTAGATTATGTCAAGAAGCATGGAGAGGGG AACTGGAATGCTATTCAGAAGCACACAGGCCTCTTACGCTGTGGAAAAAGTTGTCGACTGCGGTGGGCTAATCACCTAAG GCCAAATTTAAAGAAAGGTGCTATTACTGCAGAAGAGGAGCGGTTGATTGCCGAGCTTCATGCCAAAATAGGAAACAAAT GGGCACGCATGGCTGCACATGTAAGCATATTGTGATTTTTTTGCGGCACATGTAAGCATATTGTGATTTTTTTGTCCTAG CCTTACATATTTAGTTTTGATATTTAGTTATTGTTTTTAGGTTTTTGTGAAATTCTTTGAATTCTATTTGCCATTGATGA CGTCAGTGTTATGTCTTCCTTGTGTATTTAGGAAGGAATTTTGATCTAATAAACTTGTTTTCTTCTTTACTTGTTAATTT CCTAATGCATAACGTCACTCATTCAGTTTAAGCATCATTTAATGCTATGTCTCAACATTTACACAGCAAAGAGCTTTACA ACATTTGATTTTCTGTTTGCAAGTGATTTGTGACTCGATTGTAACGGATTAGTACAATTGCAAATTAGGTCAGTCATAGT TTTACACAGCAGAGATATAGAATACATCATTGTAACTGTCCCTGGCCAAGAGTTAGAGGGTTGTGTATGTCATATTCTGT TGGATGTTGTGAACTTGTGCTCCTTTACCCAGAGAAAAAGGATTAGTATTTGCATGCCAAAATAGGGAAACAAACAGTTG TATCAAATATAAAGCACATTCAGTTCATAATGGACTAGTGTGCAATGTTCACTTTCAGTATCTATGGTAATCATAGTGAA TGATAGTATACAGTATTTTATTCTTTCTTGAGGATGACTTAATTGCAAAGAAAATTATTTTTATTAGTTATCATAGTTTT ATAGTAATTTTGAAGGATTTAAATTATTCAGGAAATTTGCCATGAATTATAAGTAAGTGTCTTAGTACTTTTGAATTAAG ATATTTCAGGTAATGCCATCATGCATTGCTGAACAAGATTTTATAATTGTGGCAGTCAGTATCTTCTACAGCATTTTGTG CTTGTTTTCTTCATCCATGGTTAATTTCTTTTGTTTGTACTTTGTAGTTGCCTGGTCGTACGGATAATGAGATTAAGAAT TTCTGGAACACCCGGATCAAAAGGTGTCAACGTACTGGCTTGCCACTTTATCCTCCTGAAGTGTGTTTACGAGCATCGCA GGAAAGTCAGCATGGCCAAAGCACTGATGGACTTAATGGTGGCAATAGAGTGCATCCTGATTTTTTTCAGAAAAAGAATT ATGCGATACACGATGCAATATTCGACAGTTTGAAGGATAACCTGGGAATCTTCCCTTATACGCCTGAGCTTCCTGATATT TCTGTTTATGGCAGTATGCTGAAAGAACTTGATTCCTCTCAGCATTTTAGTTTTGTGCCATCAACTTCATCTTATCATAA TCATCTTCAAGAGTCAACAATTCCATCTCTTGATTCTAATGTTATGAACAGAAATGATTTTTATCCATTTGTTCACAGTC GGGATAATACTTATGATAAGATTGCACTATCATTTGGTATGCAATCAGCCCTTGATCCTGGTCCCTCCTCACACAGCTCA ATTTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTGCTTCTAAGCCATCTTCGGAGGCTTTGAAGTTGGAGCTCCC TTCACTCCAATATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTTGAATCAGTTGATGATT TCATTCAGTCTCCCACTCCAATTAGTACTCTGGAGTCATATTGTCCTTCTCCACAAAACAGTGGCCTGCTGGATGCTTTA CTTTATGAGGCAAAGACTCTGAGAAGCTCAAAGAACCATTGTTATGAAAAGAGTTCAAATTTATCTACTGCAACACCTGG TGACAAAGCAGACAGCTCTGCTGTCTACATGGACGAGACTGAATGGGAAGACTATTCTGATCCTGTATCTCCATTTGGTG CATCTTCAATATTGAATGAGTGCCCTGCTGTTAGTGCCAATGCAAATTCATTGGATGCGCGGCTACCTGTTCAGACCTTT AATGGTTAGTACCTTTTAGTGTGTGGAAGGATGATCGTTGAAAACATTTCCTCATTCTTATCAATGTTTGCATACTTCTT TGGCATAATCTAAAACTTGTTAATTATCTTGAAGATTTCCTGTTGTAGTTTGTTAGTTTATTAAGTGCCAAATTTTAAAA TAATTGTGGAAACATTCTCCTGAAAAGGCTGATGTAACTTTTTTACTTCACAAATCATAGATTTCCTCATGCACATGTTG GTCCTTAAAAATAGTAAAATACTGACTATTCCTTCATAGTACATTTTTCGATGACAGAGTTGGTATATCACGACACCTTT ATTTTTTGGTTTTTATGAAAATGCGTGTGTTAGGTATGCCCCTTAACTGTGTAATTCATGTGCAGGCAACATTGTGAAAT TAGAGTATGCTGACCAGGTCTGGACCCCTGACAGTGAAAATCAAACCATGTCAATGTTGTATACTCGGCCAGATTTCTTG CTTGCTTCAGAATGGCATGAGCAAGGTTCTGGGCATGTCAAGAGCCAAGCCATCACAACTAATGCTACATCAACTCTTCA TGAAGATGATTCAGCGATTGACTACAAACACATGACTGCTGGAACTTCTAAATCAAGTCAGGTATGGGAGCACTGTTCTT GTGCATGGAATAACATGCCTGCAATTTGTCAAGTATCTGATCGTGGTTAAGGAAACTTCTCCGGGATGTGTGATTTCAAA CTCTTCTACCAATTACATTCTTGGTGATTTTTTTAGCATCATCAGGGTTAATATATCCTGATTGAAAAAGATTTGATATT GGGTGTGATTTATAGTACTAATACATGGTCAGAGACTCGTGCTTGGTTGTGCTTTTTCATTTTTTGTTCTGTTGTTACAT GTATTGTATACCACTATGAATCTTGTGTACACAAATGCTTTTGCAGACTGAGTTCTGATAAATTTGTAGAACATTTTCAT TTGAAACTGCATGTAGCTGGATGGATTAAGAATGTCTTGTAATGTTTTTTGCTCATGATCTTAGTTTGAACTGGAACTTA ATGGTTGATATGATTCTGGTCGAGATAATCTTGATTTGTCTGAAATTTTGGTAATTTATTACCATATGTTGAAGCGTGGC CAACTTGCGAGTTGCGAAATGGAGACGCTACAACTTGCAAAGTATGACTAGAAGCTTAAAATGTTTTAATTGAAAAAACG CGGTCGTCAAGTCATCTATTTAGCTGGCTCCACCATGTAGTAGTTGCCAACAACTACATGACTCTTTTTTGGTGCAAAGG ATAGAAAGCAACTAACTACATGACTCGTCTTGTCTTTTGAATATTAACATTTTTTCAAGGAATAACCGATATAATAGTGA CATAGAC
CDS sequence (LotjaGi3g1v0311600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGGTGAAGAGTGAGATTGAAGATGAGGTGCTTTCTGACTATCACACTGGGTCACAGTTGAATGATGAGGGTTA TGAAGGACGTGTCTGCGGAGTTGTTCTGAAGAAAGGGCCATGGACATCTGCTGAAGATGATATTTTGGTAGATTATGTCA AGAAGCATGGAGAGGGGAACTGGAATGCTATTCAGAAGCACACAGGCCTCTTACGCTGTGGAAAAAGTTGTCGACTGCGG TGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGTGCTATTACTGCAGAAGAGGAGCGGTTGATTGCCGAGCTTCATGC CAAAATAGGAAACAAATGGGCACGCATGGCTGCACATTTGCCTGGTCGTACGGATAATGAGATTAAGAATTTCTGGAACA CCCGGATCAAAAGGTGTCAACGTACTGGCTTGCCACTTTATCCTCCTGAAGTGTGTTTACGAGCATCGCAGGAAAGTCAG CATGGCCAAAGCACTGATGGACTTAATGGTGGCAATAGAGTGCATCCTGATTTTTTTCAGAAAAAGAATTATGCGATACA CGATGCAATATTCGACAGTTTGAAGGATAACCTGGGAATCTTCCCTTATACGCCTGAGCTTCCTGATATTTCTGTTTATG GCAGTATGCTGAAAGAACTTGATTCCTCTCAGCATTTTAGTTTTGTGCCATCAACTTCATCTTATCATAATCATCTTCAA GAGTCAACAATTCCATCTCTTGATTCTAATGTTATGAACAGAAATGATTTTTATCCATTTGTTCACAGTCGGGATAATAC TTATGATAAGATTGCACTATCATTTGGTATGCAATCAGCCCTTGATCCTGGTCCCTCCTCACACAGCTCAATTTGTTACA GCCATTCACTTTCAAATGGCAATTCCTCTGCTTCTAAGCCATCTTCGGAGGCTTTGAAGTTGGAGCTCCCTTCACTCCAA TATCCAGAAATTGATTTAGGTAGCTGGGGCACATCTCCCCCACCTCCTTTACTTGAATCAGTTGATGATTTCATTCAGTC TCCCACTCCAATTAGTACTCTGGAGTCATATTGTCCTTCTCCACAAAACAGTGGCCTGCTGGATGCTTTACTTTATGAGG CAAAGACTCTGAGAAGCTCAAAGAACCATTGTTATGAAAAGAGTTCAAATTTATCTACTGCAACACCTGGTGACAAAGCA GACAGCTCTGCTGTCTACATGGACGAGACTGAATGGGAAGACTATTCTGATCCTGTATCTCCATTTGGTGCATCTTCAAT ATTGAATGAGTGCCCTGCTGTTAGTGCCAATGCAAATTCATTGGATGCGCGGCTACCTGTTCAGACCTTTAATGGCAACA TTGTGAAATTAGAGTATGCTGACCAGGTCTGGACCCCTGACAGTGAAAATCAAACCATGTCAATGTTGTATACTCGGCCA GATTTCTTGCTTGCTTCAGAATGGCATGAGCAAGGTTCTGGGCATGTCAAGAGCCAAGCCATCACAACTAATGCTACATC AACTCTTCATGAAGATGATTCAGCGATTGACTACAAACACATGACTGCTGGAACTTCTAAATCAAGTCAGGTATGGGAGC ACTGTTCTTGTGCATGGAATAACATGCCTGCAATTTGTCAAGTATCTGATCGTGGTTAA
Protein sequence (LotjaGi3g1v0311600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMVKSEIEDEVLSDYHTGSQLNDEGYEGRVCGVVLKKGPWTSAEDDILVDYVKKHGEGNWNAIQKHTGLLRCGKSCRLR WANHLRPNLKKGAITAEEERLIAELHAKIGNKWARMAAHLPGRTDNEIKNFWNTRIKRCQRTGLPLYPPEVCLRASQESQ HGQSTDGLNGGNRVHPDFFQKKNYAIHDAIFDSLKDNLGIFPYTPELPDISVYGSMLKELDSSQHFSFVPSTSSYHNHLQ ESTIPSLDSNVMNRNDFYPFVHSRDNTYDKIALSFGMQSALDPGPSSHSSICYSHSLSNGNSSASKPSSEALKLELPSLQ YPEIDLGSWGTSPPPPLLESVDDFIQSPTPISTLESYCPSPQNSGLLDALLYEAKTLRSSKNHCYEKSSNLSTATPGDKA DSSAVYMDETEWEDYSDPVSPFGASSILNECPAVSANANSLDARLPVQTFNGNIVKLEYADQVWTPDSENQTMSMLYTRP DFLLASEWHEQGSGHVKSQAITTNATSTLHEDDSAIDYKHMTAGTSKSSQVWEHCSCAWNNMPAICQVSDRG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 415 | 386 | 2.5E-99 | – | |
| PANTHER | 30 | 415 | 386 | 2.5E-99 | ||
| ProSiteProfiles | 33 | 89 | 57 | 22.57 | ||
| Gene3D | 36 | 91 | 56 | 8.8E-21 | – | |
| SMART | 37 | 87 | 51 | 1.4E-15 | ||
| SUPERFAMILY | 37 | 132 | 96 | 2.1E-29 | ||
| Pfam | 38 | 85 | 48 | 6.0E-15 | ||
| CDD | 40 | 85 | 46 | 3.79422E-13 | ||
| ProSiteProfiles | 90 | 140 | 51 | 17.096 | ||
| SMART | 90 | 138 | 49 | 3.3E-14 | ||
| Pfam | 91 | 134 | 44 | 1.2E-12 | ||
| Gene3D | 93 | 165 | 73 | 3.1E-18 | – | |
| CDD | 95 | 134 | 40 | 1.08886E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0311600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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