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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0311900 |
| Transcript ID | LotjaGi3g1v0311900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine-rich receptor-kinase-like protein; TAIR: AT4G05200.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 25; Swiss-Prot: sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25; TrEMBL-Plants: tr|A0A072TP06|A0A072TP06_MEDTR Cysteine-rich receptor-kinase-like protein; Found in the gene: LotjaGi3g1v0311900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:66043611..66045501) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTTAATTTTGTGTCTATGTATTATTATAACTCATATATTATGTGCATGGCTCTACCTATGGGAAATTGGAGATTAAA AAGCTCATTTTCTAGCTTCATGTTCCTCCTTTTTTTCCTCCTGCTCCATTTCACCCCAACAATAACTGCACAATCTCCAA TTTACATGTACACTTTTTGCCACAACTCAACAACAGGCAAATCTCCTACCACTTCATACCAATCCAATGTCAACAACTTC CTCTCATGGGTAACCTCTGATTCCATCACAGGCACAGTATATAACGAAACCATAATAGGCAACAATGGTGATGGTGATGG TGATGCTGCTGTTTATGGGAACTACAATTGCAGAGGAGACCTAAGTGGATATTTCTGCCAATTCTGTCTCACCACCGCCG CGAGAGAAATCGCGCAACGCTGTCCCAACACTGTCACAGCTATGATATGGTATGACACATGCATCATTCGTTGCTCCAAC TACAATTTCTTTGGAAAAATTTCTTTAACGCCGGCATGGAACGTTTCCGGGTCCAAAACCATAAAGGACTCAACAGAGCT TAGGAAAGCACAGGATGACATGAGGGGTTCGATAACAAAACTAACTAACCAGAACCAGAACCAGTACTGGGGAACTGTTG AGTTTAATTGGACTAACACTGAGAAAAGGTATGGCTTGTTGCAGTGTAGTAAAGACCTTACTAGTCATGATTGCAGACAG TGTTTAGAGACTCTGTTGGATATAGTTCCCCTGTGTTGTGAGACAAAGGTATCATGGGCAATTATGGCACCAAGCTGTGG GATGAAGTTTGATGATTATAGGTTCTACCAGATTACCAATCAGACAGGAACAGGATCCCCTTCTCTTATTCCAAATCCAG GTACTCTTTCTTAGAAATATAATCATTCATGTGTCGCTTCAAGTCTCAATGGCTGCTGCGTGAGGGAGCGTGTTATAGTT ATAACTATTCATGTGTCACTTAACCAACAACTTAAGCTTTTCGGATAATTGGTTCATGACTCTCTTCAAGATTTTGATGT TTCTGCTTGATTTGTTTTCTATCTGTACTCTTGACTCCAAAAAAAAATTTCAACAAACAATGGCTCTTGCTAAATATACT AATTAGCTTTTAACAAATTTGTGTCCTTTTAAAATGTGAAAGAAAAAGAAAAACCATTTTCATCTATGTTATTTTTGCAG CCGAGCATGAAGGTGGAAGAAATACCAAAAACCGGATTATTATCATAGTAAGTGTGTTGGTAGCAGTAGCTCTACTAATT TGTTGTGTCTATTATTCCTGGAGCAAGAATGGTTTATGTAAAGGTAAAAAAAAATCACAAATTTCATAATCCTGCCTCTG ACAATAAGACTATAGTATATCCAAACTTAAACTCCCTAGCTTCCTTGGCAGTTGGATTGCTGTTGAAGACCAATCCTACA GCTTCTAATGATCATGTTCAAAGAGAGGAATCATTGAATGAAGACCTTCCTATAATTCCTTTAGCTGTAATTCAAAAGAT AACTAATAACTTTTCAGAGTCATCCAAATTAGGAGAAGGTGGATTTGGACCTGTTTACAAGGTATCAATCAATTCCTTTA GCTATGCATAGTTTGGCTGGCTTTAACATTTTAACTTCTCCTCTTCTTTTTTCTACCTTTTCCTTTTTTTTTTTATCAGG GTACTCTACCAGATGGGACTGAAATTGCTGTCAAAAGGCTTGCGGAAACGTCTGGTCAAGGTTTAGAGGAGTTCAAGAAT GAAGTAATCTTCATAGCTAAACTGCAACACAGAAATCTTGTCAAACTCTTGGGTTGCTGCATTGAGGAAAATGAGAAGAT GCTAGTATATGAGTACATGCAAAATTCAAGCCTTGATTTTCACCTATTCAG
CDS sequence (LotjaGi3g1v0311900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTAATTTTGTGTCTATGTATTATTATAACTCATATATTATGTGCATGGCTCTACCTATGGGAAATTGGAGATTAAA AAGCTCATTTTCTAGCTTCATGTTCCTCCTTTTTTTCCTCCTGCTCCATTTCACCCCAACAATAACTGCACAATCTCCAA TTTACATGTACACTTTTTGCCACAACTCAACAACAGGCAAATCTCCTACCACTTCATACCAATCCAATGTCAACAACTTC CTCTCATGGGTAACCTCTGATTCCATCACAGGCACAGTATATAACGAAACCATAATAGGCAACAATGGTGATGGTGATGG TGATGCTGCTGTTTATGGGAACTACAATTGCAGAGGAGACCTAAGTGGATATTTCTGCCAATTCTGTCTCACCACCGCCG CGAGAGAAATCGCGCAACGCTGTCCCAACACTGTCACAGCTATGATATGGTATGACACATGCATCATTCGTTGCTCCAAC TACAATTTCTTTGGAAAAATTTCTTTAACGCCGGCATGGAACGTTTCCGGGTCCAAAACCATAAAGGACTCAACAGAGCT TAGGAAAGCACAGGATGACATGAGGGGTTCGATAACAAAACTAACTAACCAGAACCAGAACCAGTACTGGGGAACTGTTG AGTTTAATTGGACTAACACTGAGAAAAGGTATGGCTTGTTGCAGTGTAGTAAAGACCTTACTAGTCATGATTGCAGACAG TGTTTAGAGACTCTGTTGGATATAGTTCCCCTGTGTTGTGAGACAAAGGTATCATGGGCAATTATGGCACCAAGCTGTGG GATGAAGTTTGATGATTATAGGTTCTACCAGATTACCAATCAGACAGGAACAGGATCCCCTTCTCTTATTCCAAATCCAG CCGAGCATGAAGGTGGAAGAAATACCAAAAACCGGATTATTATCATAGTAAGTGTGTTGGTAGCAGTAGCTCTACTAATT TGTTGTGTCTATTATTCCTGGAGCAAGAATGGTTTATGTAAAGGTAAAAAAAAATCACAAATTTCATAA
Protein sequence (LotjaGi3g1v0311900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFNFVSMYYYNSYIMCMALPMGNWRLKSSFSSFMFLLFFLLLHFTPTITAQSPIYMYTFCHNSTTGKSPTTSYQSNVNNF LSWVTSDSITGTVYNETIIGNNGDGDGDAAVYGNYNCRGDLSGYFCQFCLTTAAREIAQRCPNTVTAMIWYDTCIIRCSN YNFFGKISLTPAWNVSGSKTIKDSTELRKAQDDMRGSITKLTNQNQNQYWGTVEFNWTNTEKRYGLLQCSKDLTSHDCRQ CLETLLDIVPLCCETKVSWAIMAPSCGMKFDDYRFYQITNQTGTGSPSLIPNPAEHEGGRNTKNRIIIIVSVLVAVALLI CCVYYSWSKNGLCKGKKKSQIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 50 | 50 | - | – | |
| Phobius | 1 | 34 | 34 | - | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| PANTHER | 30 | 324 | 295 | 8.8E-65 | – | |
| PANTHER | 30 | 324 | 295 | 8.8E-65 | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 35 | 45 | 11 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 305 | 255 | - | – | |
| Gene3D | 52 | 163 | 112 | 3.6E-18 | ||
| ProSiteProfiles | 55 | 163 | 109 | 17.512 | ||
| Pfam | 60 | 161 | 102 | 1.6E-15 | ||
| ProSiteProfiles | 169 | 275 | 107 | 17.086 | ||
| Gene3D | 173 | 275 | 103 | 2.6E-14 | ||
| Pfam | 198 | 273 | 76 | 4.3E-8 | ||
| Phobius | 306 | 327 | 22 | - | – | |
| TMHMM | 306 | 328 | 23 | - | – | |
| Phobius | 328 | 342 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0311900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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