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LotjaGi3g1v0315800.3

Overview

Field Value
Gene ID LotjaGi3g1v0315800
Transcript ID LotjaGi3g1v0315800.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description ERI1 exoribonuclease 2; TAIR: AT3G15140.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q5HZL1|ERI2_XENLA ERI1 exoribonuclease 2; TrEMBL-Plants: tr|I1M0N0|I1M0N0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0315800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:66875955..66880152) extracted from Lotus japonicus Gifu genome v1.2.

TGTTTCTTTCTTTTTTGTGCAGAAAATATGCAAATAACCTGCGAGGCATCTCTGAAATGCCTCCAGGGAAAGGGATTCCC TAGCACTTTTCAGTGTAATGGGAGTTCTATTACAGAGCTAAAAAATGATCCTGGTACTCATCCAGCTGGGGATGTTTCTG AACCTAACCGCCGTCTTGGCAGTGAGTTTCTGGAGCCTTCCAATGAATTTCACAGTAAACCTACTTATCACCATGAGTAC AACACCTGGACATCCTGCCATTTTCACTCTCCCAAAGTGCACCAATGCCCAATGAATGCTTTTGAGAGCCACTTTTATCC TTATCCTGTCGAGAACCAGCTTCAGTATGTTCCAGCTAATATGTTCGCTCAGAGTTACCCCCGGGAGCAATTTCAGGAAT TTCAATATTTCGTGGTCATAGACTTCGAGGCTACCTGTGATAAGGATAAAAATCCCCACCCTCAAGAAATAATTGAGTTC CCATCTGTCATAGTGAGTAGTGTGACTGGCCAGCTGGAAGCATGTTTCCAAACATATGTGAGGCCTACCTGCAATCAGCA TCTGACTGATTTCTGCAAGGATCTGACTGGTATCCAGCAAATTCAGGTGTGTTAAGAAAAAATCTTACCTTTTAACCATG ATGAAGTGATACAAAAAAAAAAAACAGGACAAACCATTATGTCTTTCTTCTGTGATCTTTTCAACTCTTCATTTTGTCCT TGTTATTGGACTAACAATTACATTGCTATGTGCATATCAAATATGGTGATTTCTACAATGTTTGTAATTGTAAAAGCTAA CTTCCTGGCACACCGTGAAAGTAATTTCTACAGTAGTCTATGTGCATGTTTGGTAATAAGGTCCATACACACTCCTAGGC ACGTTTCATGTTAAGCTCCAACGGGTAGCTTCTAATAGACATGCATATAGGACCACTGGGACGTGGTTCCAAATGAGCTA TATATCCCCATCTCATTGGCTAGTCTGATTGTCTACTCGGGAGTATTAGCAAAACAACAAGTTTGTCAAGGTTTGATTTG AGAAGAATTGTCTAATTTTTCCAAATGGGTAATTATTTATACTGTTTACAGTAGTAATGGCTAGATGAATCATTTTCTAC ACTACATTAGAGCCAACCAAATGAATCTATCAGTAATGACAGCTACTCATGTGTTTAAACCTAATACTAATTATGAATGT GCTTTAGTCTAACAGATTTTAATGCTCACCCTAAGTTAGTCCATAAAGTTGACCTAAGGCCTTCAAAGGGATTTGGTGAA TATTTAAGCCAACTCCTTTTTTATTTATTTAATAGAATGAGTAGTGTTCAAAATGACAATCAATCTCTGTGTTCTGCTCT TTCATGTTACTGGGATAGACACAATTTGTACTGCAGCTTGGCTGTCTCAAATCAGTTTCATTTCCATAACATTTCCCAAT TCAAGCTTGTGAAGCAACTGTTTAACCATATTAGTTCTAGACTTCTAGGTAGATATTGCCAATTGCAATAGTATTGTACT CGACCACTCACTGGATCTAGCAAGTATTTTGTGTTTTCACTCCTCATGAGATTATGTTACCTCCTACAAAAACTAAATAT GCTGAAATTAAGCTTCTATCAATGGTGAACTTGCTCAACCAGCATTTGAATAACCAACAACTTCAGCTTTGCCTTTGTTT TCATAAAGTAACCCTTTACTCGGTGCACTATTGATTTATCTCAGAATGCGGGCCACAAAGTCCCAATGACTATCTAAAAC AAGGAGCCTTTAATAATTAACTTCCTACACTTACAAAAAGAATAATATTTGATCTAGCTACTCTAAGGTAGTTGAGTTTA CTGACAAGACATCTATATCTACAAGGGTTCGTCAATTGCTCCACCTAACCTGGTAGGAGTTTGACATTAGGGTTCATTTG GAGTATTACTAGGGTTGTAGTTCAACATGGCTGTTTCCTCAAGCATTTTTATAGCATACTTTGTTTGTGTGATGGCAATC CTGACATTATATTGAGCAACTGAAATCCCCAAAAAGTACTAGAGGGTCCAAATCTTTTGTTGATAGTGGTGTGACTGATG TTGCTTAAAATTCTGGTTCAAGATTTTGTTGCTAGGCTAATCATTTCTCATGACAACAATGTCATCTACATGAACAACTA GGTGAATGCATTGATCAGGTGATATAACTGAACCTTCCAAACCAAGCATAGGATGATTGTTTTTGTCCATAGAGTAGAGG TGGCATCTGAGTTGGGCACATCATGTGCAGTATGACCCATAGTTGTTGCTAGACCCGCTTATTGCAACTCACCATGCTGA AAGGCCTTATTAATATCTAACTAATGAAGTGGCCATTAATGAATGGTAGCCTACTAGCCTTCACAACAAAGAGGAAAAAT AGTTATTTTGGCCACAAAAGAAAAAGCATTTCGATAATTGAGGCCAAATAGTTGTGTATATCCTATGGCCACAAGTAGGG ATGTCAAAATTATCCACACTTGCGGATATCCGTGGATAAAAACCCTTTATGAGTAAAATGTTCTTAGAGAGCAAACCTAC ACTAGTTACCTAAGAGTTAATGGCAGCCAATACTAGCAATGCCTACGATTTACTCATTATATATGTGCTTAAACGTGCCA TTTGATTCTAGCAATATCTATGTTCTGGATTAATTATAAGAGGAATCATTTCCTAAATTGGAGCTAACCAACACTGTTTA CCTAAGTGTTAAAAAGATAATACTTCTCATTATACACATGCTTAATCCCATCTAGTTCTAGCTATCTAGACTTTGGTCTA CTTATTGAATTTTGATTAATTTGCCTGAACTTGCACTGTATTTTCTCCATGGTACGGATTTTATACTCTTTATAACAATA CATTGCAGTTATGATTGTCAGAATAATGTGTACAATATTCAGTTTGAGCATATTCTGTTTCTATTTCTTTATCCAATGTG TCAAGTAATTGAAATCTAACATTCTACTATTGGTTGGCATTGTATATAATATCAAATGATTTGAAGTGATTAATTTGAAA GTGGAAAAGTTGTGGGGAACCTGGACATTAAGTAGAAATTCATGTCAAGTGGGTCTGTAAATGGGGACATGGAGTGCACC TGTGATTGCTTCTCACACAATTTACATCCCTGCATCTTTAGCGGCAGCCATTTGTGTGTGTGTGTGTGTGCTGTCGGATT AGATAATGAATAACCATTTTGAGATTGCCCCAGTTAAGACATGTGGTATTATAAAGGAGCTTTACTTAGGCATGGTAGGT ATGGATAGATGCTTTTGCCCACATACAACCTTTGTGAGCACACCATAAGTATGATCACAAACTGACATTGGATGATAGAC ATATTTCTATGCTGTATCTTTTTATAACCTATCTGTAGCTAATCAAGTATTACATTTGCCTATTCATTCTTGGCTATTGG TGAAGATTGTTAACCGTATTTCTTACTATATGGTTCAGGTGGACAGAGGTGTTACTTTGAGTGAGGCTCTACTTAGGCAT GACAAGTGGCTTGAGAAGAAGGGAATAAAGAACGCCAACTTTGCTGTGGTTACATGGTCTAACTGGGATTGCCGTGTGAT GCTTGAATCTGAGTGCCGATTCAAGAAAATACGAAAACCTCCTTATTTCAACCGGTAAATGTTGCATTATAGAAATGATG ATCCATGTTTATCAGGATTTCGTTTCAACTAACTTTTGTTTATCTTCTTCTTAACTTGTGCTAGCTGGATCAACTTAAGG ATTCCTTTCCGTGAGGTATTTGGTGCTGTGAAGTGTAATCTGAAGGAGGCTGTTGAGATTGCTGGCTTGGCTTGGCAGGG TCGTGCTCATTGTGGCCTTGATGATGCTAAAAATACTGCTCGCCTGCTGGCTCTGCTCATGCATAAGGGTTTCAAATTTT CCATTACCAATTCCATTATGTGGCAGACTTCTGATCGATCACTGATGTGGAAGCAGTCTCCTGAACAAATGAGTGTTTTC CCTCATTACCCCTACAAAGCAAAGGATATGAATACCCCCATCGTTCAGTACCACCCTTGCTGTTTCTGTGGGGTGAAAAG CAGTAGGGGCATGATCAGGAAGCCAGGGCCCAAGCATGGGAACCTTTTCTTTGGATGTGGAAATTGGACTGCAACTAGAG GTGCCCGCTGCCATTACTTTGAATGGATTTCTGCCTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0315800.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAAATAACCTGCGAGGCATCTCTGAAATGCCTCCAGGGAAAGGGATTCCCTAGCACTTTTCAGTGTAATGGGAGTTC TATTACAGAGCTAAAAAATGATCCTGGTACTCATCCAGCTGGGGATGTTTCTGAACCTAACCGCCGTCTTGGCAGTGAGT TTCTGGAGCCTTCCAATGAATTTCACAGTAAACCTACTTATCACCATGAGTACAACACCTGGACATCCTGCCATTTTCAC TCTCCCAAAGTGCACCAATGCCCAATGAATGCTTTTGAGAGCCACTTTTATCCTTATCCTGTCGAGAACCAGCTTCAGTA TGTTCCAGCTAATATGTTCGCTCAGAGTTACCCCCGGGAGCAATTTCAGGAATTTCAATATTTCGTGGTCATAGACTTCG AGGCTACCTGTGATAAGGATAAAAATCCCCACCCTCAAGAAATAATTGAGTTCCCATCTGTCATAGTGAGTAGTGTGACT GGCCAGCTGGAAGCATGTTTCCAAACATATGTGAGGCCTACCTGCAATCAGCATCTGACTGATTTCTGCAAGGATCTGAC TGGTATCCAGCAAATTCAGGTGGACAGAGGTGTTACTTTGAGTGAGGCTCTACTTAGGCATGACAAGTGGCTTGAGAAGA AGGGAATAAAGAACGCCAACTTTGCTGTGGTTACATGGTCTAACTGGGATTGCCGTGTGATGCTTGAATCTGAGTGCCGA TTCAAGAAAATACGAAAACCTCCTTATTTCAACCGCTGGATCAACTTAAGGATTCCTTTCCGTGAGGTATTTGGTGCTGT GAAGTGTAATCTGAAGGAGGCTGTTGAGATTGCTGGCTTGGCTTGGCAGGGTCGTGCTCATTGTGGCCTTGATGATGCTA AAAATACTGCTCGCCTGCTGGCTCTGCTCATGCATAAGGGTTTCAAATTTTCCATTACCAATTCCATTATGTGGCAGACT TCTGATCGATCACTGATGTGGAAGCAGTCTCCTGAACAAATGAGTGTTTTCCCTCATTACCCCTACAAAGCAAAGGATAT GAATACCCCCATCGTTCAGTACCACCCTTGCTGTTTCTGTGGGGTGAAAAGCAGTAGGGGCATGATCAGGAAGCCAGGGC CCAAGCATGGGAACCTTTTCTTTGGATGTGGAAATTGGACTGCAACTAGAGGTGCCCGCTGCCATTACTTTGAATGGATT TCTGCCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0315800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQITCEASLKCLQGKGFPSTFQCNGSSITELKNDPGTHPAGDVSEPNRRLGSEFLEPSNEFHSKPTYHHEYNTWTSCHFH SPKVHQCPMNAFESHFYPYPVENQLQYVPANMFAQSYPREQFQEFQYFVVIDFEATCDKDKNPHPQEIIEFPSVIVSSVT GQLEACFQTYVRPTCNQHLTDFCKDLTGIQQIQVDRGVTLSEALLRHDKWLEKKGIKNANFAVVTWSNWDCRVMLESECR FKKIRKPPYFNRWINLRIPFREVFGAVKCNLKEAVEIAGLAWQGRAHCGLDDAKNTARLLALLMHKGFKFSITNSIMWQT SDRSLMWKQSPEQMSVFPHYPYKAKDMNTPIVQYHPCCFCGVKSSRGMIRKPGPKHGNLFFGCGNWTATRGARCHYFEWI SA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23044
2 396 395 7.0E-163 –
PANTHER
PTHR23044:SF37
2 396 395 7.0E-163 –
MobiDBLite
mobidb-lite
28 47 20 - –
Gene3D
G3DSA:3.30.420.10
118 343 226 9.5E-74
IPR036397
SUPERFAMILY
SSF53098
125 314 190 2.58E-34
IPR012337
SMART
SM00479
127 309 183 2.0E-22
IPR013520
CDD
cd06133
128 304 177 2.61836E-68 –
Pfam
PF00929
129 300 172 3.8E-27
IPR013520

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0315800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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